Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014425

Physical Location & Seq

Genomic Coordinates Forward (+)

8940701 .. 8941513

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0104800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTTCTGTTGAAACCTGTGTTGAGCACGAGCTTCCTGTAAGCACTGGTAAAGACTATAAAACAAAGAGTGAGCAAGTGCAACGAGCTCAGTGGCTTCGAGCTGCTATACTCGGCGCAAGTGATGGCCTTCTATCCACTACATCGCTAATGCTTGGTGTCGGTGCAGTGAAGGATGATCGTTGGTCGATGATCCTTTCTGGAGTAGCTGGAGCTGTTGCAGGAGCTTGTAGCATGGCCGTGGGGGAGTTTGTTTCTGTTTCAACTCAAAGAGATATCGAAAAGGTGTCTCTAAGCCAAAACAGCAGTACTTTAAATAGTGTGTTGAGGGAGAGAGATGGTAATGGTAAGGTGGTTAAGCTTAATATCCCTGAATCAAGTTTCACCATATCAGTTGAACTGACACCTTCAAGAAGACCAAGCTCATCTGAAAAACCAACTGATGAGCCAACCGAGAAGATGCCAAGTAAGATCAACACGTTTGAAATAAAAGAAACTGATGAAGAGGAGTCGCTGCCAAGCCCTCATAAGGCAGCTTCAGCCTCAGCGTTGGCATTTCTGTGTGGTTCACTTGTGCCTTTACTGTCAGTCATGTTTATTTCTCAAAACTTGATGAGAATGGTGGTGGTTGTGGTGGTGACATCAATAGCTCTAGCTTTCTTTGGGGCTATTGGAGCTCGTATGGGTGGCTCACCTGTTCGGGCATCTGCAATTCGAGTTCTTGTTGGAGGCTGGATCTCCATGGCGGTTACCTATGGTTTGCTTAGACCTTTCGATAGAGATCATTCAAAAGGTTTGATGGACAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

270

Amino Acids

28.81

Weight (kDa)

6.85

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	33 - 254	9.2e-44	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36710
fragaria_vesca	FvH4_1g13740
malus_domestica	MD02G1152200.v1.1 MD15G1266500.v1.1
prunus_persica	Prupe.7G150900_v2.0.a1
pyrus_communis	pycom02g11950
rosa_chinensis	RchiOBHm_Chr2g0102171
rosa_laevigata	RLG00000017134
rosa_multiflora	Rmu_co8491613.1_g000001 Rmu_sc0000157.1_g000043
rosa_roxburghii	Rroxscaffold_2G00140730
rosa_rugosa	Rorug02G0104800
rosa_samantha	Rh2AG153200 Rh2BG159100 Rh2CG158600 Rh2DG158800
rosa_wichuraiana	Rw2G011960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	2 cut(s)	187, 743
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	14, 264, 398, 411, 485, 789
Alw21I	GWGCWC	3 cut(s)	30, 91, 679
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	187, 743
AoxI	GGCC	2 cut(s)	127, 237
ApeKI	GCWGC	3 cut(s)	104, 514, 533
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	376, 649, 684
BanII	GRGCYC	2 cut(s)	91, 679
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	3 cut(s)	30, 91, 679
BbvCI	CCTCAGC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	91, 501, 545
BccI	CCATC	3 cut(s)	119, 332, 793
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	653
BisI	GCNGC	3 cut(s)	105, 515, 534
BlsI	GCNGC	3 cut(s)	106, 516, 535
BmcAI	AGTACT	1 cut(s)	310
BmsI	GCATC	2 cut(s)	450, 713
BpiI	GAAGAC	1 cut(s)	421
BpmI	CTGGAG	2 cut(s)	222, 231
Bpu10I	CCTNAGC	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	240, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	240, 741
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	104, 558
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	91, 501, 545
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	129, 239
BsiHKAI	GWGCWC	3 cut(s)	30, 91, 679
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	129, 239
Bsp1286I	GDGCHC	3 cut(s)	30, 91, 679
Bsp143I	GATC	5 cut(s)	178, 192, 471, 735, 781
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	1 cut(s)	746
BspANI	GGCC	2 cut(s)	129, 239
BspCNI	CTCAG	2 cut(s)	103, 557
BspPI	GGATC	2 cut(s)	187, 743
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	240, 741
BssMI	GATC	5 cut(s)	178, 192, 471, 735, 781
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	90, 293, 544, 764
BstDSI	CCRYGG	2 cut(s)	240, 741
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	5 cut(s)	181, 195, 474, 738, 784
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	178, 192, 471, 735, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 539, 674
BstPI	GGTNACC	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	91, 501, 545
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	129, 239
BtgI	CCRYGG	2 cut(s)	240, 741
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	45, 98, 174
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	235, 592, 742
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	4 cut(s)	90, 293, 544, 764
DpnI	GATC	5 cut(s)	180, 194, 473, 737, 783
DpnII	GATC	5 cut(s)	178, 192, 471, 735, 781
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	2 cut(s)	89, 677
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	2 cut(s)	91, 679
Eco32I	GATATC	1 cut(s)	277
Eco53kI	GAGCTC	2 cut(s)	89, 677
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	748
EcoICRI	GAGCTC	2 cut(s)	89, 677
EcoO65I	GGTNACC	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	2 cut(s)	91, 679
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	3 cut(s)	238, 595, 745
FaiI	YATR	9 cut(s)	60, 110, 236, 389, 528, 593, 683, 743, 756
FatI	CATG	3 cut(s)	234, 591, 741
Fnu4HI	GCNGC	3 cut(s)	105, 515, 534
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	91, 679
Fsp4HI	GCNGC	3 cut(s)	105, 515, 534
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	3 cut(s)	105, 515, 534
GsuI	CTGGAG	2 cut(s)	222, 231
HaeIII	GGCC	2 cut(s)	129, 239
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	238, 595, 745
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	374, 509
HphI	GGTGA	3 cut(s)	376, 649, 684
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	201, 411
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	140, 166, 417
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	4 cut(s)	82, 167, 221, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 539, 674
HpyF3I	CTNAG	4 cut(s)	90, 293, 544, 764
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	238, 595, 745
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	178, 192, 471, 735, 781
LmnI	GCTCC	3 cut(s)	212, 224, 674
LpnPI	CCDG	9 cut(s)	31, 33, 51, 186, 195, 207, 384, 708, 718
Lsp1109I	GCAGC	3 cut(s)	91, 501, 545
LweI	GCATC	2 cut(s)	450, 713
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	637, 748
MalI	GATC	5 cut(s)	180, 194, 473, 737, 783
MboI	GATC	5 cut(s)	178, 192, 471, 735, 781
MboII	GAAGA	3 cut(s)	426, 469, 515
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	3 cut(s)	30, 91, 679
MluCI	AATT	1 cut(s)	711
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	5 cut(s)	321, 499, 534, 553, 722
MseI	TTAA	3 cut(s)	314, 357, 363
MslI	CAYNNNNRTG	2 cut(s)	239, 559
MwoI	GCNNNNNNNGC	3 cut(s)	303, 539, 674
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	5 cut(s)	178, 192, 471, 735, 781
NlaIII	CATG	3 cut(s)	238, 595, 745
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	637
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	106, 516, 535
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp124BI	GAGCTC	2 cut(s)	91, 679
PspEI	GGTNACC	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	2 cut(s)	239, 559
SacI	GAGCTC	2 cut(s)	91, 679
SaqAI	TTAA	3 cut(s)	314, 357, 363
SatI	GCNGC	3 cut(s)	105, 515, 534
Sau3AI	GATC	5 cut(s)	178, 192, 471, 735, 781
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	1 cut(s)	518
SduI	GDGCHC	3 cut(s)	30, 91, 679
SfaNI	GCATC	2 cut(s)	450, 713
SmiMI	CAYNNNNRTG	2 cut(s)	239, 559
Sse9I	AATT	1 cut(s)	711
SsiI	CCGC	1 cut(s)	746
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	2 cut(s)	91, 679
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	5 cut(s)	100, 188, 279, 715, 774
TasI	AATT	1 cut(s)	711
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	314, 357, 363
Tru9I	TTAA	3 cut(s)	314, 357, 363
TscAI	CASTG	3 cut(s)	52, 98, 174
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	104, 514, 533
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	52, 98, 174
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.