Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008643

Physical Location & Seq

Genomic Coordinates Forward (+)

33923594 .. 33924213

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1283200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTGTCACTTTCGGCGACAGACCCTCCCACCTCCAAATCCCCAGTAAATGGAGGGACTCGGAAACCAGCCCCGACCGGATTAGTCCTGCCCAGACCGGTCCCAGTCTCCCTTTCATTCCCAGAAAAGTTCCTGTCGTTTACTACCTGTCCATGAACGGCCAGCTCGAGCACCCGCACTTCATGGAAGTCCATCTCTCCTCTCCTCGTGGCCTCTTTCTCAGAGGTAAGAATTTATTTTCTGTCCACTTTCTCGGCAACCAAACAGGCTCAAATCAAATGAATTTAGTTTGTGCGTTTCTTTCCTTAGATGTTATCAACCGGTTAAACTTGCTACGTGGCAAAGGCATGGCTTTGATGTACTCCTGGTCTTCCAAACGAGGGAAGGATGAAGATGGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGGGGAAGGGAAGACGATCTGAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF966

Protein Analysis

152

Amino Acids

16.47

Weight (kDa)

9.46

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOK	PF06136	44 - 75	8.9e-11	SOSEKI protein DIX-like domain
SOK	PF06136	102 - 128	2.4e-09	SOSEKI protein DIX-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59790 AT5G59790
fragaria_vesca	FvH4_3g34970 FvH4_3g34970 FvH4_3g34970 FvH4_3g34970
malus_domestica	MD02G1283200.v1.1 MD03G1099800.v1.1 MD11G1113900.v1.1
prunus_persica	Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1
pyrus_communis	pycom11g09590
rosa_chinensis	RchiOBHm_Chr5g0062881
rosa_laevigata	RLG00000035588
rosa_multiflora	Rmu_sc0010832.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017740
rosa_rugosa	Rorug05G0352500.1
rosa_samantha	Rh5AG413500 Rh5BG427800 Rh5CG451300 Rh5DG441400
rosa_wichuraiana	Rw5G038860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	51
AciI	CCGC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	232, 283
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	51, 381
AgeI	ACCGGT	2 cut(s)	98, 321
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	160, 211
ApoI	RAATTY	2 cut(s)	232, 283
AsiGI	ACCGGT	2 cut(s)	98, 321
AspS9I	GGNCC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	363, 444
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	2 cut(s)	201, 389
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	2 cut(s)	39, 99
BmuI	ACTGGG	2 cut(s)	39, 99
BpiI	GAAGAC	2 cut(s)	363, 444
BsaAI	YACGTR	1 cut(s)	338
BsaWI	WCCGGW	3 cut(s)	78, 98, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 381
Bse118I	RCCGGY	2 cut(s)	98, 321
Bse1I	ACTGG	2 cut(s)	45, 105
BseBI	CCWGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	51, 381
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	2 cut(s)	45, 105
BseRI	GAGGAG	8 cut(s)	190, 195, 414, 417, 420, 423, 426, 429
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	162, 213
BshTI	ACCGGT	2 cut(s)	98, 321
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	79, 99, 322
BslFI	GGGAC	2 cut(s)	71, 87
BslI	CCNNNNNNNGG	2 cut(s)	51, 381
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	71, 87
BsnI	GGCC	2 cut(s)	162, 213
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	162, 213
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	103
BsrFI	RCCGGY	2 cut(s)	98, 321
BsrI	ACTGG	2 cut(s)	45, 105
BssAI	RCCGGY	2 cut(s)	98, 321
BssMI	GATC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	221, 307
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	442
BstMCI	CGRYCG	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstV2I	GAAGAC	2 cut(s)	363, 444
BsuRI	GGCC	2 cut(s)	162, 213
BtsCI	GGATG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	98, 321
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	361
CspAI	ACCGGT	2 cut(s)	98, 321
CviAII	CATG	3 cut(s)	154, 184, 349
CviJI	RGCY	6 cut(s)	72, 162, 166, 213, 270, 353
CviKI_1	RGCY	6 cut(s)	72, 162, 166, 213, 270, 353
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	221, 307
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	365
FaeI	CATG	3 cut(s)	157, 187, 352
FaiI	YATR	3 cut(s)	155, 185, 350
FaqI	GGGAC	2 cut(s)	71, 87
FatI	CATG	3 cut(s)	153, 183, 348
FauI	CCCGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	162, 213
HapII	CCGG	3 cut(s)	79, 99, 322
Hin1II	CATG	3 cut(s)	157, 187, 352
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	3 cut(s)	79, 99, 322
Hpy166II	GTNNAC	2 cut(s)	142, 247
Hpy188I	TCNGA	3 cut(s)	64, 224, 447
Hpy8I	GTNNAC	2 cut(s)	142, 247
HpyAV	CCTTC	3 cut(s)	379, 426, 442
HpyCH4IV	ACGT	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	221, 307
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	157, 187, 352
Kzo9I	GATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	3 cut(s)	363, 404, 449
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	232, 283
MlyI	GAGTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	326
MspI	CCGG	3 cut(s)	79, 99, 322
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	157, 187, 352
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	51
PinAI	ACCGGT	2 cut(s)	98, 321
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	167
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	326
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	36, 150, 168, 229, 340, 421, 453
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	232, 283
SsiI	CCGC	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	365
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	232, 283
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	5 cut(s)	106, 170, 172, 296, 405
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	232, 283
XhoI	CTCGAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.