Protein UPSTREAM OF
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59790 AT5G59790 |
| fragaria_vesca | FvH4_3g34970 FvH4_3g34970 FvH4_3g34970 FvH4_3g34970 |
| malus_domestica | MD02G1283200.v1.1 MD03G1099800.v1.1 MD11G1113900.v1.1 |
| prunus_persica | Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1 |
| pyrus_communis | pycom11g09590 |
| rosa_chinensis | RchiOBHm_Chr5g0062881 |
| rosa_laevigata | RLG00000035588 |
| rosa_multiflora | Rmu_sc0010832.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00017740 |
| rosa_rugosa | Rorug05G0352500.1 |
| rosa_samantha | Rh5AG413500 Rh5BG427800 Rh5CG451300 Rh5DG441400 |
| rosa_wichuraiana | Rw5G038860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 204 |
| AccB1I | GGYRCC | 1 cut(s) | 627 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 51 |
| AccI | GTMKAC | 1 cut(s) | 605 |
| AccII | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| AcoI | YGGCCR | 2 cut(s) | 157, 358 |
| AcuI | CTGAAG | 1 cut(s) | 680 |
| AcvI | CACGTG | 1 cut(s) | 1001 |
| AcyI | GRCGYC | 1 cut(s) | 428 |
| AfaI | GTAC | 4 cut(s) | 275, 368, 554, 715 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 51, 356, 1004 |
| AflIII | ACRYGT | 2 cut(s) | 600, 637 |
| AgsI | TTSAA | 5 cut(s) | 95, 241, 538, 671, 1129 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 937 |
| AjiI | CACGTC | 1 cut(s) | 638 |
| AjnI | CCWGG | 3 cut(s) | 278, 518, 1217 |
| AleI | CACNNNNGTG | 1 cut(s) | 947 |
| AluBI | AGCT | 7 cut(s) | 163, 297, 525, 590, 721, 1092, 1124 |
| AluI | AGCT | 7 cut(s) | 163, 297, 525, 590, 721, 1092, 1124 |
| Alw21I | GWGCWC | 3 cut(s) | 171, 527, 1165 |
| Alw26I | GTCTC | 5 cut(s) | 51, 215, 439, 1025, 1094 |
| Alw44I | GTGCAC | 1 cut(s) | 1161 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 933 |
| Ama87I | CYCGRG | 3 cut(s) | 164, 204, 773 |
| AoxI | GGCC | 4 cut(s) | 19, 157, 358, 879 |
| ApaLI | GTGCAC | 1 cut(s) | 1161 |
| ApeKI | GCWGC | 2 cut(s) | 590, 994 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 627, 659, 1024, 1056 |
| AspLEI | GCGC | 3 cut(s) | 504, 657, 1010 |
| AspS9I | GGNCC | 3 cut(s) | 438, 889, 939 |
| AsuC2I | CCSGG | 2 cut(s) | 728, 864 |
| AsuHPI | GGTGA | 4 cut(s) | 817, 961, 1033, 1255 |
| AsuII | TTCGAA | 1 cut(s) | 1043 |
| AvaI | CYCGRG | 3 cut(s) | 164, 204, 773 |
| AvaII | GGWCC | 3 cut(s) | 438, 889, 939 |
| BaeGI | GKGCMC | 1 cut(s) | 1165 |
| BanI | GGYRCC | 1 cut(s) | 627 |
| BanII | GRGCYC | 1 cut(s) | 527 |
| BauI | CACGAG | 1 cut(s) | 362 |
| BbrPI | CACGTG | 1 cut(s) | 1001 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| Bbv12I | GWGCWC | 3 cut(s) | 171, 527, 1165 |
| BbvI | GCAGC | 2 cut(s) | 577, 981 |
| BccI | CCATC | 1 cut(s) | 788 |
| BceAI | ACGGC | 5 cut(s) | 172, 373, 815, 864, 960 |
| BciT130I | CCWGG | 3 cut(s) | 280, 520, 1219 |
| BclI | TGATCA | 1 cut(s) | 1291 |
| BcnI | CCSGG | 2 cut(s) | 728, 864 |
| BcoDI | GTCTC | 5 cut(s) | 51, 215, 439, 1025, 1094 |
| BfaI | CTAG | 3 cut(s) | 150, 759, 990 |
| BisI | GCNGC | 6 cut(s) | 591, 594, 626, 913, 995, 1006 |
| BlpI | GCTNAGC | 1 cut(s) | 722 |
| BlsI | GCNGC | 6 cut(s) | 592, 595, 627, 914, 996, 1007 |
| Bme1390I | CCNGG | 5 cut(s) | 280, 520, 728, 864, 1219 |
| Bme18I | GGWCC | 3 cut(s) | 438, 889, 939 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 937 |
| BmeT110I | CYCGRG | 3 cut(s) | 164, 204, 773 |
| BmgBI | CACGTC | 1 cut(s) | 638 |
| BmgT120I | GGNCC | 3 cut(s) | 438, 889, 939 |
| BmiI | GGNNCC | 4 cut(s) | 440, 629, 940, 1119 |
| BmrFI | CCNGG | 5 cut(s) | 280, 520, 728, 864, 1219 |
| BmrI | ACTGGG | 1 cut(s) | 39 |
| BmsI | GCATC | 1 cut(s) | 885 |
| BmuI | ACTGGG | 1 cut(s) | 39 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BpmI | CTGGAG | 1 cut(s) | 541 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 722 |
| Bpu14I | TTCGAA | 1 cut(s) | 1043 |
| BpuMI | CCSGG | 2 cut(s) | 728, 864 |
| BsaAI | YACGTR | 2 cut(s) | 251, 1001 |
| BsaHI | GRCGYC | 1 cut(s) | 428 |
| BsaI | GGTCTC | 2 cut(s) | 215, 439 |
| BsaJI | CCNNGG | 3 cut(s) | 727, 942, 1217 |
| BsaWI | WCCGGW | 1 cut(s) | 78 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 51, 356, 1004 |
| Bse118I | RCCGGY | 3 cut(s) | 305, 504, 581 |
| Bse1I | ACTGG | 1 cut(s) | 45 |
| BseBI | CCWGG | 3 cut(s) | 280, 520, 1219 |
| BseDI | CCNNGG | 3 cut(s) | 727, 942, 1217 |
| BseGI | GGATG | 1 cut(s) | 799 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 51, 356, 1004 |
| BseMII | CTCAG | 4 cut(s) | 434, 623, 713, 1020 |
| BseNI | ACTGG | 1 cut(s) | 45 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseSI | GKGCMC | 1 cut(s) | 1165 |
| BseXI | GCAGC | 2 cut(s) | 577, 981 |
| BseYI | CCCAGC | 1 cut(s) | 1238 |
| BsgI | GTGCAG | 1 cut(s) | 796 |
| Bsh1236I | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| Bsh1285I | CGRYCG | 1 cut(s) | 570 |
| BshFI | GGCC | 4 cut(s) | 21, 159, 360, 881 |
| BshNI | GGYRCC | 1 cut(s) | 627 |
| BsiEI | CGRYCG | 1 cut(s) | 570 |
| BsiHKAI | GWGCWC | 3 cut(s) | 171, 527, 1165 |
| BsiHKCI | CYCGRG | 3 cut(s) | 164, 204, 773 |
| BsiSI | CCGG | 8 cut(s) | 79, 306, 455, 471, 505, 582, 727, 863 |
| BslFI | GGGAC | 3 cut(s) | 113, 424, 944 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 51, 356, 1004 |
| BsmAI | GTCTC | 5 cut(s) | 51, 215, 439, 1025, 1094 |
| BsmBI | CGTCTC | 1 cut(s) | 1025 |
| BsmFI | GGGAC | 3 cut(s) | 113, 424, 944 |
| BsnI | GGCC | 4 cut(s) | 21, 159, 360, 881 |
| Bso31I | GGTCTC | 2 cut(s) | 215, 439 |
| BsoBI | CYCGRG | 3 cut(s) | 164, 204, 773 |
| Bsp119I | TTCGAA | 1 cut(s) | 1043 |
| Bsp1286I | GDGCHC | 3 cut(s) | 171, 527, 1165 |
| Bsp1407I | TGTACA | 1 cut(s) | 552 |
| Bsp143I | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 722 |
| BspANI | GGCC | 4 cut(s) | 21, 159, 360, 881 |
| BspCNI | CTCAG | 4 cut(s) | 435, 622, 714, 1021 |
| BspFNI | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| BspLI | GGNNCC | 4 cut(s) | 440, 629, 940, 1119 |
| BspQI | GCTCTTC | 1 cut(s) | 645 |
| BspT104I | TTCGAA | 1 cut(s) | 1043 |
| BspT107I | GGYRCC | 1 cut(s) | 627 |
| BspTNI | GGTCTC | 2 cut(s) | 215, 439 |
| BsrFI | RCCGGY | 3 cut(s) | 305, 504, 581 |
| BsrGI | TGTACA | 1 cut(s) | 552 |
| BsrI | ACTGG | 1 cut(s) | 45 |
| BssAI | RCCGGY | 3 cut(s) | 305, 504, 581 |
| BssECI | CCNNGG | 3 cut(s) | 727, 942, 1217 |
| BssMI | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| BssNI | GRCGYC | 1 cut(s) | 428 |
| BssSI | CACGAG | 1 cut(s) | 362 |
| Bst2BI | CACGAG | 1 cut(s) | 362 |
| Bst2UI | CCWGG | 3 cut(s) | 280, 520, 1219 |
| Bst4CI | ACNGT | 3 cut(s) | 1036, 1167, 1277 |
| Bst6I | CTCTTC | 3 cut(s) | 202, 645, 1124 |
| BstACI | GRCGYC | 1 cut(s) | 428 |
| BstAUI | TGTACA | 1 cut(s) | 552 |
| BstBAI | YACGTR | 2 cut(s) | 251, 1001 |
| BstBI | TTCGAA | 1 cut(s) | 1043 |
| BstC8I | GCNNGC | 4 cut(s) | 161, 506, 583, 826 |
| BstDEI | CTNAG | 5 cut(s) | 218, 443, 609, 722, 1029 |
| BstDSI | CCRYGG | 1 cut(s) | 942 |
| BstF5I | GGATG | 1 cut(s) | 799 |
| BstFNI | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| BstHHI | GCGC | 3 cut(s) | 504, 657, 1010 |
| BstKTI | GATC | 5 cut(s) | 498, 810, 921, 1156, 1294 |
| BstMAI | GTCTC | 5 cut(s) | 51, 215, 439, 1025, 1094 |
| BstMBI | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| BstMCI | CGRYCG | 1 cut(s) | 570 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 587, 599, 778, 976, 1121 |
| BstNI | CCWGG | 3 cut(s) | 280, 520, 1219 |
| BstSCI | CCNGG | 5 cut(s) | 278, 518, 726, 862, 1217 |
| BstSLI | GKGCMC | 1 cut(s) | 1165 |
| BstUI | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| BstV1I | GCAGC | 2 cut(s) | 577, 981 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| BsuRI | GGCC | 4 cut(s) | 21, 159, 360, 881 |
| BtgI | CCRYGG | 1 cut(s) | 942 |
| BtgZI | GCGATG | 1 cut(s) | 843 |
| BtrI | CACGTC | 1 cut(s) | 638 |
| BtsCI | GGATG | 1 cut(s) | 799 |
| BtsI | GCAGTG | 1 cut(s) | 1232 |
| BtsIMutI | CAGTG | 2 cut(s) | 1232, 1282 |
| Cac8I | GCNNGC | 4 cut(s) | 161, 506, 583, 826 |
| CaiI | CAGNNNCTG | 1 cut(s) | 933 |
| CfoI | GCGC | 3 cut(s) | 504, 657, 1010 |
| Cfr10I | RCCGGY | 3 cut(s) | 305, 504, 581 |
| Cfr13I | GGNCC | 3 cut(s) | 438, 889, 939 |
| CseI | GACGC | 3 cut(s) | 417, 591, 608 |
| Csp6I | GTAC | 4 cut(s) | 274, 367, 553, 714 |
| CviAII | CATG | 4 cut(s) | 112, 181, 262, 1316 |
| CviQI | GTAC | 4 cut(s) | 274, 367, 553, 714 |
| DdeI | CTNAG | 5 cut(s) | 218, 443, 609, 722, 1029 |
| DpnI | GATC | 5 cut(s) | 497, 809, 920, 1155, 1293 |
| DpnII | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| DriI | GACNNNNNGTC | 1 cut(s) | 937 |
| EaeI | YGGCCR | 2 cut(s) | 157, 358 |
| Eam1104I | CTCTTC | 3 cut(s) | 202, 645, 1124 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 937 |
| EarI | CTCTTC | 3 cut(s) | 202, 645, 1124 |
| EciI | GGCGGA | 5 cut(s) | 441, 568, 735, 806, 866 |
| Ecl136II | GAGCTC | 1 cut(s) | 525 |
| Eco147I | AGGCCT | 1 cut(s) | 881 |
| Eco24I | GRGCYC | 1 cut(s) | 527 |
| Eco31I | GGTCTC | 2 cut(s) | 215, 439 |
| Eco47I | GGWCC | 3 cut(s) | 438, 889, 939 |
| Eco53kI | GAGCTC | 1 cut(s) | 525 |
| Eco57I | CTGAAG | 1 cut(s) | 680 |
| Eco72I | CACGTG | 1 cut(s) | 1001 |
| Eco88I | CYCGRG | 3 cut(s) | 164, 204, 773 |
| EcoICRI | GAGCTC | 1 cut(s) | 525 |
| EcoO109I | RGGNCCY | 1 cut(s) | 438 |
| EcoRII | CCWGG | 3 cut(s) | 278, 518, 1217 |
| EcoT22I | ATGCAT | 1 cut(s) | 1214 |
| EcoT38I | GRGCYC | 1 cut(s) | 527 |
| Esp3I | CGTCTC | 1 cut(s) | 1025 |
| FaeI | CATG | 4 cut(s) | 115, 184, 265, 1319 |
| FaiI | YATR | 7 cut(s) | 113, 182, 263, 344, 705, 1214, 1317 |
| FaqI | GGGAC | 3 cut(s) | 113, 424, 944 |
| FatI | CATG | 4 cut(s) | 111, 180, 261, 1315 |
| FauI | CCCGC | 5 cut(s) | 405, 929, 1003, 1045, 1079 |
| FbaI | TGATCA | 1 cut(s) | 1291 |
| FblI | GTMKAC | 1 cut(s) | 605 |
| Fnu4HI | GCNGC | 6 cut(s) | 591, 594, 626, 913, 995, 1006 |
| FokI | GGATG | 1 cut(s) | 806 |
| FriOI | GRGCYC | 1 cut(s) | 527 |
| Fsp4HI | GCNGC | 6 cut(s) | 591, 594, 626, 913, 995, 1006 |
| FspBI | CTAG | 3 cut(s) | 150, 759, 990 |
| GlaI | GCGC | 3 cut(s) | 503, 656, 1009 |
| GluI | GCNGC | 6 cut(s) | 591, 594, 626, 913, 995, 1006 |
| GsaI | CCCAGC | 1 cut(s) | 1242 |
| GsuI | CTGGAG | 1 cut(s) | 541 |
| HaeIII | GGCC | 4 cut(s) | 21, 159, 360, 881 |
| HapII | CCGG | 8 cut(s) | 79, 306, 455, 471, 505, 582, 727, 863 |
| HgaI | GACGC | 3 cut(s) | 417, 591, 608 |
| HhaI | GCGC | 3 cut(s) | 504, 657, 1010 |
| Hin1I | GRCGYC | 1 cut(s) | 428 |
| Hin1II | CATG | 4 cut(s) | 115, 184, 265, 1319 |
| Hin6I | GCGC | 3 cut(s) | 502, 655, 1008 |
| HinP1I | GCGC | 3 cut(s) | 502, 655, 1008 |
| HincII | GTYRAC | 2 cut(s) | 606, 683 |
| HindII | GTYRAC | 2 cut(s) | 606, 683 |
| HpaII | CCGG | 8 cut(s) | 79, 306, 455, 471, 505, 582, 727, 863 |
| HphI | GGTGA | 4 cut(s) | 817, 961, 1033, 1255 |
| Hpy166II | GTNNAC | 8 cut(s) | 139, 406, 553, 606, 683, 839, 942, 1163 |
| Hpy188III | TCNNGA | 5 cut(s) | 15, 392, 419, 647, 892 |
| Hpy8I | GTNNAC | 8 cut(s) | 139, 406, 553, 606, 683, 839, 942, 1163 |
| HpyAV | CCTTC | 5 cut(s) | 759, 781, 871, 953, 1240 |
| HpyCH4III | ACNGT | 3 cut(s) | 1036, 1167, 1277 |
| HpyCH4IV | ACGT | 4 cut(s) | 250, 369, 637, 1000 |
| HpyCH4V | TGCA | 6 cut(s) | 813, 898, 1151, 1163, 1171, 1212 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 587, 599, 778, 976, 1121 |
| HpyF3I | CTNAG | 5 cut(s) | 218, 443, 609, 722, 1029 |
| HpySE526I | ACGT | 4 cut(s) | 250, 369, 637, 1000 |
| Hsp92I | GRCGYC | 1 cut(s) | 428 |
| Hsp92II | CATG | 4 cut(s) | 115, 184, 265, 1319 |
| HspAI | GCGC | 3 cut(s) | 502, 655, 1008 |
| KroI | GCCGGC | 2 cut(s) | 504, 581 |
| KroNI | GCCGGC | 2 cut(s) | 506, 583 |
| Ksp22I | TGATCA | 1 cut(s) | 1291 |
| Kzo9I | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| LguI | GCTCTTC | 1 cut(s) | 645 |
| LmnI | GCTCC | 6 cut(s) | 294, 522, 718, 1089, 1298, 1305 |
| Lsp1109I | GCAGC | 2 cut(s) | 577, 981 |
| LweI | GCATC | 1 cut(s) | 885 |
| MaeI | CTAG | 3 cut(s) | 150, 759, 990 |
| MaeII | ACGT | 4 cut(s) | 250, 369, 637, 1000 |
| MaeIII | GTNAC | 1 cut(s) | 7 |
| MalI | GATC | 5 cut(s) | 497, 809, 920, 1155, 1293 |
| MboI | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| MboII | GAAGA | 5 cut(s) | 189, 276, 662, 1079, 1141 |
| MfeI | CAATTG | 1 cut(s) | 1172 |
| MhlI | GDGCHC | 3 cut(s) | 171, 527, 1165 |
| MluCI | AATT | 4 cut(s) | 1038, 1061, 1095, 1172 |
| MluI | ACGCGT | 1 cut(s) | 600 |
| MlyI | GAGTC | 6 cut(s) | 53, 109, 572, 584, 601, 785 |
| MmeI | TCCRAC | 2 cut(s) | 309, 550 |
| Mph1103I | ATGCAT | 1 cut(s) | 1214 |
| MreI | CGCCGGCG | 1 cut(s) | 504 |
| MroNI | GCCGGC | 2 cut(s) | 504, 581 |
| MseI | TTAA | 3 cut(s) | 231, 1059, 1094 |
| MslI | CAYNNNNRTG | 1 cut(s) | 947 |
| MspI | CCGG | 8 cut(s) | 79, 306, 455, 471, 505, 582, 727, 863 |
| MspR9I | CCNGG | 5 cut(s) | 280, 520, 728, 864, 1219 |
| MunI | CAATTG | 1 cut(s) | 1172 |
| MvaI | CCWGG | 3 cut(s) | 280, 520, 1219 |
| MvnI | CGCG | 4 cut(s) | 602, 657, 1010, 1052 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 587, 599, 778, 976, 1121 |
| NaeI | GCCGGC | 2 cut(s) | 506, 583 |
| NciI | CCSGG | 2 cut(s) | 728, 864 |
| NdeII | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| NgoMIV | GCCGGC | 2 cut(s) | 504, 581 |
| NlaIII | CATG | 4 cut(s) | 115, 184, 265, 1319 |
| NlaIV | GGNNCC | 4 cut(s) | 440, 629, 940, 1119 |
| NmuCI | GTSAC | 1 cut(s) | 7 |
| NsiI | ATGCAT | 1 cut(s) | 1214 |
| NspV | TTCGAA | 1 cut(s) | 1043 |
| OliI | CACNNNNGTG | 1 cut(s) | 947 |
| PaeR7I | CTCGAG | 3 cut(s) | 164, 204, 773 |
| PceI | AGGCCT | 1 cut(s) | 881 |
| PciSI | GCTCTTC | 1 cut(s) | 645 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 162, 318, 431, 643, 821, 825, 914, 1040 |
| PdiI | GCCGGC | 2 cut(s) | 506, 583 |
| PfeI | GAWTC | 6 cut(s) | 422, 485, 700, 755, 963, 1015 |
| PflFI | GACNNNGTC | 1 cut(s) | 562 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 51 |
| PfoI | TCCNGGA | 1 cut(s) | 518 |
| PkrI | GCNGC | 6 cut(s) | 592, 595, 627, 914, 996, 1007 |
| PleI | GAGTC | 6 cut(s) | 53, 109, 571, 583, 601, 784 |
| PmaCI | CACGTG | 1 cut(s) | 1001 |
| PmlI | CACGTG | 1 cut(s) | 1001 |
| PpsI | GAGTC | 6 cut(s) | 53, 109, 571, 583, 601, 784 |
| Ppu21I | YACGTR | 2 cut(s) | 251, 1001 |
| PpuMI | RGGWCCY | 1 cut(s) | 438 |
| Psp124BI | GAGCTC | 1 cut(s) | 527 |
| Psp5II | RGGWCCY | 1 cut(s) | 438 |
| Psp6I | CCWGG | 3 cut(s) | 278, 518, 1217 |
| PspCI | CACGTG | 1 cut(s) | 1001 |
| PspFI | CCCAGC | 1 cut(s) | 1238 |
| PspGI | CCWGG | 3 cut(s) | 278, 518, 1217 |
| PspN4I | GGNNCC | 4 cut(s) | 440, 629, 940, 1119 |
| PspPI | GGNCC | 3 cut(s) | 438, 889, 939 |
| PspPPI | RGGWCCY | 1 cut(s) | 438 |
| PspXI | VCTCGAGB | 3 cut(s) | 164, 204, 773 |
| PstNI | CAGNNNCTG | 1 cut(s) | 933 |
| PsyI | GACNNNGTC | 1 cut(s) | 562 |
| RsaI | GTAC | 4 cut(s) | 275, 368, 554, 715 |
| RsaNI | GTAC | 4 cut(s) | 274, 367, 553, 714 |
| RseI | CAYNNNNRTG | 1 cut(s) | 947 |
| SacI | GAGCTC | 1 cut(s) | 527 |
| SalI | GTCGAC | 1 cut(s) | 604 |
| SapI | GCTCTTC | 1 cut(s) | 645 |
| SaqAI | TTAA | 3 cut(s) | 231, 1059, 1094 |
| SatI | GCNGC | 6 cut(s) | 591, 594, 626, 913, 995, 1006 |
| Sau3AI | GATC | 5 cut(s) | 495, 807, 918, 1153, 1291 |
| Sau96I | GGNCC | 3 cut(s) | 438, 889, 939 |
| SchI | GAGTC | 6 cut(s) | 53, 109, 572, 584, 601, 785 |
| ScrFI | CCNGG | 5 cut(s) | 280, 520, 728, 864, 1219 |
| SduI | GDGCHC | 3 cut(s) | 171, 527, 1165 |
| SfaNI | GCATC | 1 cut(s) | 885 |
| Sfr274I | CTCGAG | 3 cut(s) | 164, 204, 773 |
| SfuI | TTCGAA | 1 cut(s) | 1043 |
| SgrAI | CRCCGGYG | 1 cut(s) | 504 |
| SinI | GGWCC | 3 cut(s) | 438, 889, 939 |
| SlaI | CTCGAG | 3 cut(s) | 164, 204, 773 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 947 |
| SmlI | CTYRAG | 3 cut(s) | 164, 204, 773 |
| SmoI | CTYRAG | 3 cut(s) | 164, 204, 773 |
| Sse9I | AATT | 4 cut(s) | 1038, 1061, 1095, 1172 |
| SseBI | AGGCCT | 1 cut(s) | 881 |
| SspMI | CTAG | 3 cut(s) | 150, 759, 990 |
| SstI | GAGCTC | 1 cut(s) | 527 |
| StuI | AGGCCT | 1 cut(s) | 881 |
| StyD4I | CCNGG | 5 cut(s) | 278, 518, 726, 862, 1217 |
| TaaI | ACNGT | 3 cut(s) | 1036, 1167, 1277 |
| TaiI | ACGT | 4 cut(s) | 253, 372, 640, 1003 |
| TaqII | GACCGA | 4 cut(s) | 556, 575, 629, 877 |
| TasI | AATT | 4 cut(s) | 1038, 1061, 1095, 1172 |
| TatI | WGTACW | 2 cut(s) | 273, 552 |
| TauI | GCSGC | 4 cut(s) | 596, 628, 915, 1008 |
| TfiI | GAWTC | 6 cut(s) | 422, 485, 700, 755, 963, 1015 |
| Tru1I | TTAA | 3 cut(s) | 231, 1059, 1094 |
| Tru9I | TTAA | 3 cut(s) | 231, 1059, 1094 |
| TscAI | CASTG | 2 cut(s) | 1239, 1282 |
| TseFI | GTSAC | 1 cut(s) | 7 |
| TseI | GCWGC | 2 cut(s) | 590, 994 |
| Tsp45I | GTSAC | 1 cut(s) | 7 |
| TspDTI | ATGAA | 5 cut(s) | 169, 331, 692, 800, 890 |
| TspGWI | ACGGA | 3 cut(s) | 307, 480, 731 |
| TspRI | CASTG | 2 cut(s) | 1239, 1282 |
| Tth111I | GACNNNGTC | 1 cut(s) | 562 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 51 |
| VneI | GTGCAC | 1 cut(s) | 1161 |
| VpaK11BI | GGWCC | 3 cut(s) | 438, 889, 939 |
| XhoI | CTCGAG | 3 cut(s) | 164, 204, 773 |
| XmiI | GTMKAC | 1 cut(s) | 605 |
| XspI | CTAG | 3 cut(s) | 150, 759, 990 |
| Zsp2I | ATGCAT | 1 cut(s) | 1214 |