Protein UPSTREAM OF
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59790 AT5G59790 |
| fragaria_vesca | FvH4_3g34970 FvH4_3g34970 FvH4_3g34970 FvH4_3g34970 |
| malus_domestica | MD02G1283200.v1.1 MD03G1099800.v1.1 MD11G1113900.v1.1 |
| prunus_persica | Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1 Prupe.6G084700_v2.0.a1 |
| pyrus_communis | pycom11g09590 |
| rosa_chinensis | RchiOBHm_Chr5g0062881 |
| rosa_laevigata | RLG00000035588 |
| rosa_multiflora | Rmu_sc0010832.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00017740 |
| rosa_rugosa | Rorug05G0352500.1 |
| rosa_samantha | Rh5AG413500 Rh5BG427800 Rh5CG451300 Rh5DG441400 |
| rosa_wichuraiana | Rw5G038860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 149 |
| AccB1I | GGYRCC | 1 cut(s) | 642 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 57, 205 |
| AccBSI | CCGCTC | 1 cut(s) | 842 |
| AccI | GTMKAC | 4 cut(s) | 162, 576, 620, 962 |
| AccII | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| AclWI | GGATC | 1 cut(s) | 40 |
| AcoI | YGGCCR | 4 cut(s) | 181, 288, 1044, 1257 |
| AcsI | RAATTY | 1 cut(s) | 1063 |
| AcuI | CTGAAG | 1 cut(s) | 812 |
| AcyI | GRCGYC | 1 cut(s) | 452 |
| AfaI | GTAC | 4 cut(s) | 299, 392, 569, 1004 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 57, 205, 380, 816 |
| AflIII | ACRYGT | 2 cut(s) | 615, 652 |
| AgsI | TTSAA | 2 cut(s) | 400, 1331 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 653, 958 |
| AjnI | CCWGG | 2 cut(s) | 302, 883 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 968, 1000 |
| AluBI | AGCT | 6 cut(s) | 187, 412, 549, 739, 1110, 1142 |
| AluI | AGCT | 6 cut(s) | 187, 412, 549, 739, 1110, 1142 |
| Alw21I | GWGCWC | 4 cut(s) | 195, 551, 915, 1181 |
| Alw26I | GTCTC | 2 cut(s) | 1112, 1193 |
| AlwI | GGATC | 1 cut(s) | 40 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 925, 954 |
| Ama87I | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| AoxI | GGCC | 5 cut(s) | 181, 232, 288, 1044, 1257 |
| ApeKI | GCWGC | 2 cut(s) | 442, 1015 |
| ApoI | RAATTY | 1 cut(s) | 1063 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 642, 674, 1116, 1148 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 362 |
| AspLEI | GCGC | 3 cut(s) | 63, 442, 528 |
| AspS9I | GGNCC | 2 cut(s) | 211, 976 |
| AsuC2I | CCSGG | 3 cut(s) | 672, 1070, 1071 |
| AsuHPI | GGTGA | 4 cut(s) | 439, 529, 982, 1087 |
| AsuII | TTCGAA | 1 cut(s) | 1061 |
| AvaI | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| AvaII | GGWCC | 2 cut(s) | 211, 976 |
| AxyI | CCTNAGG | 1 cut(s) | 873 |
| BalI | TGGCCA | 2 cut(s) | 290, 1259 |
| BanI | GGYRCC | 1 cut(s) | 642 |
| BanII | GRGCYC | 4 cut(s) | 99, 434, 551, 782 |
| BauI | CACGAG | 1 cut(s) | 92 |
| Bbv12I | GWGCWC | 4 cut(s) | 195, 551, 915, 1181 |
| BbvI | GCAGC | 2 cut(s) | 429, 1002 |
| BccI | CCATC | 4 cut(s) | 430, 560, 841, 1205 |
| BceAI | ACGGC | 4 cut(s) | 196, 397, 751, 833 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 424, 458, 600, 634 |
| BciT130I | CCWGG | 2 cut(s) | 304, 885 |
| BciVI | GTATCC | 1 cut(s) | 314 |
| BcnI | CCSGG | 3 cut(s) | 672, 1070, 1071 |
| BcoDI | GTCTC | 2 cut(s) | 1112, 1193 |
| BfaI | CTAG | 2 cut(s) | 1011, 1236 |
| BfmI | CTRYAG | 1 cut(s) | 138 |
| BfoI | RGCGCY | 1 cut(s) | 443 |
| BfuI | GTATCC | 1 cut(s) | 314 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1052 |
| BisI | GCNGC | 8 cut(s) | 232, 443, 476, 609, 641, 843, 869, 1016 |
| BlsI | GCNGC | 8 cut(s) | 233, 444, 477, 610, 642, 844, 870, 1017 |
| Bme1390I | CCNGG | 5 cut(s) | 304, 672, 885, 1070, 1071 |
| Bme18I | GGWCC | 2 cut(s) | 211, 976 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 653, 958 |
| BmeT110I | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| BmgT120I | GGNCC | 2 cut(s) | 211, 976 |
| BmiI | GGNNCC | 6 cut(s) | 213, 536, 644, 669, 977, 1319 |
| BmrFI | CCNGG | 5 cut(s) | 304, 672, 885, 1070, 1071 |
| BmsI | GCATC | 1 cut(s) | 1176 |
| BpmI | CTGGAG | 3 cut(s) | 26, 157, 1214 |
| Bpu14I | TTCGAA | 1 cut(s) | 1061 |
| BpuMI | CCSGG | 3 cut(s) | 672, 1070, 1071 |
| BsaHI | GRCGYC | 1 cut(s) | 452 |
| BsaI | GGTCTC | 1 cut(s) | 1112 |
| BsaJI | CCNNGG | 5 cut(s) | 274, 379, 1021, 1069, 1070 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 109, 139, 155, 185 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 57, 205, 380, 816 |
| Bse118I | RCCGGY | 3 cut(s) | 258, 424, 514 |
| Bse1I | ACTGG | 2 cut(s) | 538, 1197 |
| Bse21I | CCTNAGG | 1 cut(s) | 873 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| BseBI | CCWGG | 2 cut(s) | 304, 885 |
| BseDI | CCNNGG | 5 cut(s) | 274, 379, 1021, 1069, 1070 |
| BseGI | GGATG | 1 cut(s) | 1216 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 57, 205, 380, 816 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 1 cut(s) | 864 |
| BseNI | ACTGG | 2 cut(s) | 538, 1197 |
| BseRI | GAGGAG | 3 cut(s) | 216, 866, 1211 |
| BseXI | GCAGC | 2 cut(s) | 429, 1002 |
| BseYI | CCCAGC | 1 cut(s) | 739 |
| Bsh1236I | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| Bsh1285I | CGRYCG | 1 cut(s) | 594 |
| BshFI | GGCC | 5 cut(s) | 183, 234, 290, 1046, 1259 |
| BshNI | GGYRCC | 1 cut(s) | 642 |
| BsiEI | CGRYCG | 1 cut(s) | 594 |
| BsiHKAI | GWGCWC | 4 cut(s) | 195, 551, 915, 1181 |
| BsiHKCI | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| BsiSI | CCGG | 8 cut(s) | 259, 425, 479, 495, 515, 529, 672, 1070 |
| BslFI | GGGAC | 6 cut(s) | 137, 197, 361, 761, 965, 989 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 57, 205, 380, 816 |
| BsmAI | GTCTC | 2 cut(s) | 1112, 1193 |
| BsmFI | GGGAC | 6 cut(s) | 137, 197, 361, 761, 965, 989 |
| BsnI | GGCC | 5 cut(s) | 183, 234, 290, 1046, 1259 |
| Bso31I | GGTCTC | 1 cut(s) | 1112 |
| BsoBI | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| Bsp119I | TTCGAA | 1 cut(s) | 1061 |
| Bsp1286I | GDGCHC | 7 cut(s) | 99, 195, 434, 551, 782, 915, 1181 |
| Bsp143I | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| BspANI | GGCC | 5 cut(s) | 183, 234, 290, 1046, 1259 |
| BspCNI | CTCAG | 1 cut(s) | 865 |
| BspFNI | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| BspLI | GGNNCC | 6 cut(s) | 213, 536, 644, 669, 977, 1319 |
| BspMAI | CTGCAG | 1 cut(s) | 142 |
| BspPI | GGATC | 1 cut(s) | 40 |
| BspT104I | TTCGAA | 1 cut(s) | 1061 |
| BspT107I | GGYRCC | 1 cut(s) | 642 |
| BspTNI | GGTCTC | 1 cut(s) | 1112 |
| BsrBI | CCGCTC | 1 cut(s) | 842 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BsrFI | RCCGGY | 3 cut(s) | 258, 424, 514 |
| BsrI | ACTGG | 2 cut(s) | 538, 1197 |
| BssAI | RCCGGY | 3 cut(s) | 258, 424, 514 |
| BssECI | CCNNGG | 5 cut(s) | 274, 379, 1021, 1069, 1070 |
| BssMI | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| BssNI | GRCGYC | 1 cut(s) | 452 |
| BssSI | CACGAG | 1 cut(s) | 92 |
| Bst2BI | CACGAG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 2 cut(s) | 304, 885 |
| Bst4CI | ACNGT | 2 cut(s) | 956, 970 |
| Bst6I | CTCTTC | 4 cut(s) | 226, 242, 684, 1080 |
| BstACI | GRCGYC | 1 cut(s) | 452 |
| BstBI | TTCGAA | 1 cut(s) | 1061 |
| BstC8I | GCNNGC | 1 cut(s) | 185 |
| BstDEI | CTNAG | 1 cut(s) | 873 |
| BstDSI | CCRYGG | 2 cut(s) | 379, 1021 |
| BstF5I | GGATG | 1 cut(s) | 1216 |
| BstFNI | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| BstH2I | RGCGCY | 1 cut(s) | 443 |
| BstHHI | GCGC | 3 cut(s) | 63, 442, 528 |
| BstKTI | GATC | 4 cut(s) | 48, 522, 1116, 1174 |
| BstMAI | GTCTC | 2 cut(s) | 1112, 1193 |
| BstMBI | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| BstMCI | CGRYCG | 1 cut(s) | 594 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 137, 268, 472, 484, 608, 614, 729, 839, 1052 |
| BstNI | CCWGG | 2 cut(s) | 304, 885 |
| BstSCI | CCNGG | 5 cut(s) | 302, 670, 883, 1068, 1069 |
| BstSFI | CTRYAG | 1 cut(s) | 138 |
| BstUI | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| BstV1I | GCAGC | 2 cut(s) | 429, 1002 |
| BstX2I | RGATCY | 1 cut(s) | 45 |
| BstYI | RGATCY | 1 cut(s) | 45 |
| Bsu36I | CCTNAGG | 1 cut(s) | 873 |
| BsuI | GTATCC | 1 cut(s) | 314 |
| BsuRI | GGCC | 5 cut(s) | 183, 234, 290, 1046, 1259 |
| BtgI | CCRYGG | 2 cut(s) | 379, 1021 |
| BtgZI | GCGATG | 1 cut(s) | 860 |
| BtsCI | GGATG | 1 cut(s) | 1216 |
| BtsI | GCAGTG | 1 cut(s) | 1035 |
| BtsIMutI | CAGTG | 1 cut(s) | 1035 |
| Cac8I | GCNNGC | 1 cut(s) | 185 |
| CaiI | CAGNNNCTG | 2 cut(s) | 925, 954 |
| CfoI | GCGC | 3 cut(s) | 63, 442, 528 |
| Cfr10I | RCCGGY | 3 cut(s) | 258, 424, 514 |
| Cfr13I | GGNCC | 2 cut(s) | 211, 976 |
| Cfr42I | CCGCGG | 1 cut(s) | 1024 |
| Cfr9I | CCCGGG | 1 cut(s) | 1069 |
| CseI | GACGC | 7 cut(s) | 441, 606, 623, 631, 643, 660, 891 |
| Csp6I | GTAC | 4 cut(s) | 298, 391, 568, 1003 |
| CviAII | CATG | 5 cut(s) | 205, 286, 295, 488, 916 |
| CviQI | GTAC | 4 cut(s) | 298, 391, 568, 1003 |
| DdeI | CTNAG | 1 cut(s) | 873 |
| DpnI | GATC | 4 cut(s) | 47, 521, 1115, 1173 |
| DpnII | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 149 |
| DriI | GACNNNNNGTC | 2 cut(s) | 653, 958 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 149 |
| EaeI | YGGCCR | 4 cut(s) | 181, 288, 1044, 1257 |
| Eam1104I | CTCTTC | 4 cut(s) | 226, 242, 684, 1080 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 653, 958 |
| EarI | CTCTTC | 4 cut(s) | 226, 242, 684, 1080 |
| EciI | GGCGGA | 3 cut(s) | 462, 753, 855 |
| Ecl136II | GAGCTC | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 4 cut(s) | 99, 434, 551, 782 |
| Eco31I | GGTCTC | 1 cut(s) | 1112 |
| Eco47I | GGWCC | 2 cut(s) | 211, 976 |
| Eco53kI | GAGCTC | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 1 cut(s) | 812 |
| Eco81I | CCTNAGG | 1 cut(s) | 873 |
| Eco88I | CYCGRG | 3 cut(s) | 188, 791, 1069 |
| EcoICRI | GAGCTC | 1 cut(s) | 549 |
| EcoO109I | RGGNCCY | 1 cut(s) | 211 |
| EcoRII | CCWGG | 2 cut(s) | 302, 883 |
| EcoT22I | ATGCAT | 1 cut(s) | 1232 |
| EcoT38I | GRGCYC | 4 cut(s) | 99, 434, 551, 782 |
| FaeI | CATG | 5 cut(s) | 208, 289, 298, 491, 919 |
| FaiI | YATR | 9 cut(s) | 116, 206, 287, 296, 368, 489, 917, 1232, 1336 |
| FaqI | GGGAC | 6 cut(s) | 137, 197, 361, 761, 965, 989 |
| FatI | CATG | 5 cut(s) | 204, 285, 294, 487, 915 |
| FauI | CCCGC | 4 cut(s) | 429, 926, 1028, 1097 |
| FblI | GTMKAC | 4 cut(s) | 162, 576, 620, 962 |
| Fnu4HI | GCNGC | 8 cut(s) | 232, 443, 476, 609, 641, 843, 869, 1016 |
| FokI | GGATG | 1 cut(s) | 1223 |
| FriOI | GRGCYC | 4 cut(s) | 99, 434, 551, 782 |
| Fsp4HI | GCNGC | 8 cut(s) | 232, 443, 476, 609, 641, 843, 869, 1016 |
| FspBI | CTAG | 2 cut(s) | 1011, 1236 |
| GlaI | GCGC | 3 cut(s) | 62, 441, 527 |
| GluI | GCNGC | 8 cut(s) | 232, 443, 476, 609, 641, 843, 869, 1016 |
| GsaI | CCCAGC | 1 cut(s) | 743 |
| GsuI | CTGGAG | 3 cut(s) | 26, 157, 1214 |
| HaeII | RGCGCY | 1 cut(s) | 443 |
| HaeIII | GGCC | 5 cut(s) | 183, 234, 290, 1046, 1259 |
| HapII | CCGG | 8 cut(s) | 259, 425, 479, 495, 515, 529, 672, 1070 |
| HgaI | GACGC | 7 cut(s) | 441, 606, 623, 631, 643, 660, 891 |
| HhaI | GCGC | 3 cut(s) | 63, 442, 528 |
| Hin1I | GRCGYC | 1 cut(s) | 452 |
| Hin1II | CATG | 5 cut(s) | 208, 289, 298, 491, 919 |
| Hin6I | GCGC | 3 cut(s) | 61, 440, 526 |
| HinP1I | GCGC | 3 cut(s) | 61, 440, 526 |
| HincII | GTYRAC | 3 cut(s) | 621, 707, 963 |
| HindII | GTYRAC | 3 cut(s) | 621, 707, 963 |
| HpaII | CCGG | 8 cut(s) | 259, 425, 479, 495, 515, 529, 672, 1070 |
| HphI | GGTGA | 4 cut(s) | 439, 529, 982, 1087 |
| Hpy166II | GTNNAC | 5 cut(s) | 163, 577, 621, 707, 963 |
| Hpy188I | TCNGA | 9 cut(s) | 70, 245, 275, 355, 409, 702, 772, 861, 1176 |
| Hpy188III | TCNNGA | 6 cut(s) | 15, 43, 174, 416, 662, 1117 |
| Hpy8I | GTNNAC | 5 cut(s) | 163, 577, 621, 707, 963 |
| HpyAV | CCTTC | 3 cut(s) | 1084, 1201, 1304 |
| HpyCH4III | ACNGT | 2 cut(s) | 956, 970 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 8 cut(s) | 140, 311, 445, 487, 919, 1169, 1189, 1230 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 137, 268, 472, 484, 608, 614, 729, 839, 1052 |
| HpyF3I | CTNAG | 1 cut(s) | 873 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92I | GRCGYC | 1 cut(s) | 452 |
| Hsp92II | CATG | 5 cut(s) | 208, 289, 298, 491, 919 |
| HspAI | GCGC | 3 cut(s) | 61, 440, 526 |
| KspI | CCGCGG | 1 cut(s) | 1024 |
| Kzo9I | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| Lsp1109I | GCAGC | 2 cut(s) | 429, 1002 |
| LweI | GCATC | 1 cut(s) | 1176 |
| MaeI | CTAG | 2 cut(s) | 1011, 1236 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 2 cut(s) | 7, 503 |
| MalI | GATC | 4 cut(s) | 47, 521, 1115, 1173 |
| MbiI | CCGCTC | 1 cut(s) | 842 |
| MboI | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| MboII | GAAGA | 4 cut(s) | 213, 229, 701, 1097 |
| MflI | RGATCY | 1 cut(s) | 45 |
| MhlI | GDGCHC | 7 cut(s) | 99, 195, 434, 551, 782, 915, 1181 |
| MlsI | TGGCCA | 2 cut(s) | 290, 1259 |
| MluCI | AATT | 2 cut(s) | 1063, 1079 |
| MluI | ACGCGT | 2 cut(s) | 615, 652 |
| MluNI | TGGCCA | 2 cut(s) | 290, 1259 |
| MlyI | GAGTC | 6 cut(s) | 59, 112, 503, 596, 712, 803 |
| MmeI | TCCRAC | 2 cut(s) | 333, 750 |
| Mox20I | TGGCCA | 2 cut(s) | 290, 1259 |
| Mph1103I | ATGCAT | 1 cut(s) | 1232 |
| MroXI | GAANNNNTTC | 1 cut(s) | 362 |
| MscI | TGGCCA | 2 cut(s) | 290, 1259 |
| MseI | TTAA | 1 cut(s) | 255 |
| MslI | CAYNNNNRTG | 2 cut(s) | 384, 1184 |
| Msp20I | TGGCCA | 2 cut(s) | 290, 1259 |
| MspA1I | CMGCKG | 2 cut(s) | 982, 1023 |
| MspI | CCGG | 8 cut(s) | 259, 425, 479, 495, 515, 529, 672, 1070 |
| MspR9I | CCNGG | 5 cut(s) | 304, 672, 885, 1070, 1071 |
| MvaI | CCWGG | 2 cut(s) | 304, 885 |
| MvnI | CGCG | 5 cut(s) | 63, 231, 617, 654, 1023 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 137, 268, 472, 484, 608, 614, 729, 839, 1052 |
| NciI | CCSGG | 3 cut(s) | 672, 1070, 1071 |
| NdeII | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| NlaIII | CATG | 5 cut(s) | 208, 289, 298, 491, 919 |
| NlaIV | GGNNCC | 6 cut(s) | 213, 536, 644, 669, 977, 1319 |
| NmeAIII | GCCGAG | 1 cut(s) | 1072 |
| NmuCI | GTSAC | 1 cut(s) | 7 |
| NsiI | ATGCAT | 1 cut(s) | 1232 |
| NspV | TTCGAA | 1 cut(s) | 1061 |
| PaeR7I | CTCGAG | 2 cut(s) | 188, 791 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 186, 455, 561, 764, 794, 935 |
| PdmI | GAANNNNTTC | 1 cut(s) | 362 |
| PfeI | GAWTC | 5 cut(s) | 491, 773, 856, 862, 1033 |
| PflFI | GACNNNGTC | 1 cut(s) | 586 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 57, 205 |
| PkrI | GCNGC | 8 cut(s) | 233, 444, 477, 610, 642, 844, 870, 1017 |
| PleI | GAGTC | 6 cut(s) | 59, 112, 503, 595, 711, 802 |
| PpsI | GAGTC | 6 cut(s) | 59, 112, 503, 595, 711, 802 |
| PpuMI | RGGWCCY | 1 cut(s) | 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 551 |
| Psp5II | RGGWCCY | 1 cut(s) | 211 |
| Psp6I | CCWGG | 2 cut(s) | 302, 883 |
| PspFI | CCCAGC | 1 cut(s) | 739 |
| PspGI | CCWGG | 2 cut(s) | 302, 883 |
| PspN4I | GGNNCC | 6 cut(s) | 213, 536, 644, 669, 977, 1319 |
| PspPI | GGNCC | 2 cut(s) | 211, 976 |
| PspPPI | RGGWCCY | 1 cut(s) | 211 |
| PspXI | VCTCGAGB | 2 cut(s) | 188, 791 |
| PstI | CTGCAG | 1 cut(s) | 142 |
| PstNI | CAGNNNCTG | 2 cut(s) | 925, 954 |
| PsuI | RGATCY | 1 cut(s) | 45 |
| PsyI | GACNNNGTC | 1 cut(s) | 586 |
| RsaI | GTAC | 4 cut(s) | 299, 392, 569, 1004 |
| RsaNI | GTAC | 4 cut(s) | 298, 391, 568, 1003 |
| RseI | CAYNNNNRTG | 2 cut(s) | 384, 1184 |
| SacI | GAGCTC | 1 cut(s) | 551 |
| SacII | CCGCGG | 1 cut(s) | 1024 |
| SalI | GTCGAC | 2 cut(s) | 619, 961 |
| SaqAI | TTAA | 1 cut(s) | 255 |
| SatI | GCNGC | 8 cut(s) | 232, 443, 476, 609, 641, 843, 869, 1016 |
| Sau3AI | GATC | 4 cut(s) | 45, 519, 1113, 1171 |
| Sau96I | GGNCC | 2 cut(s) | 211, 976 |
| SchI | GAGTC | 6 cut(s) | 59, 112, 503, 596, 712, 803 |
| ScrFI | CCNGG | 5 cut(s) | 304, 672, 885, 1070, 1071 |
| SduI | GDGCHC | 7 cut(s) | 99, 195, 434, 551, 782, 915, 1181 |
| SfaNI | GCATC | 1 cut(s) | 1176 |
| SfcI | CTRYAG | 1 cut(s) | 138 |
| Sfr274I | CTCGAG | 2 cut(s) | 188, 791 |
| Sfr303I | CCGCGG | 1 cut(s) | 1024 |
| SfuI | TTCGAA | 1 cut(s) | 1061 |
| SgrAI | CRCCGGYG | 2 cut(s) | 424, 514 |
| SgrBI | CCGCGG | 1 cut(s) | 1024 |
| SgrDI | CGTCGACG | 1 cut(s) | 619 |
| SinI | GGWCC | 2 cut(s) | 211, 976 |
| SlaI | CTCGAG | 2 cut(s) | 188, 791 |
| SmaI | CCCGGG | 1 cut(s) | 1071 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 384, 1184 |
| SmlI | CTYRAG | 2 cut(s) | 188, 791 |
| SmoI | CTYRAG | 2 cut(s) | 188, 791 |
| Sse9I | AATT | 2 cut(s) | 1063, 1079 |
| SspMI | CTAG | 2 cut(s) | 1011, 1236 |
| SstI | GAGCTC | 1 cut(s) | 551 |
| StyD4I | CCNGG | 5 cut(s) | 302, 670, 883, 1068, 1069 |
| TaaI | ACNGT | 2 cut(s) | 956, 970 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TaqII | GACCGA | 2 cut(s) | 580, 599 |
| TasI | AATT | 2 cut(s) | 1063, 1079 |
| TatI | WGTACW | 3 cut(s) | 297, 567, 1002 |
| TauI | GCSGC | 6 cut(s) | 234, 478, 611, 643, 845, 871 |
| TfiI | GAWTC | 5 cut(s) | 491, 773, 856, 862, 1033 |
| Tru1I | TTAA | 1 cut(s) | 255 |
| Tru9I | TTAA | 1 cut(s) | 255 |
| TscAI | CASTG | 1 cut(s) | 1035 |
| TseFI | GTSAC | 1 cut(s) | 7 |
| TseI | GCWGC | 2 cut(s) | 442, 1015 |
| Tsp45I | GTSAC | 1 cut(s) | 7 |
| TspDTI | ATGAA | 5 cut(s) | 193, 355, 818, 911, 1270 |
| TspGWI | ACGGA | 4 cut(s) | 644, 749, 828, 852 |
| TspMI | CCCGGG | 1 cut(s) | 1069 |
| TspRI | CASTG | 1 cut(s) | 1035 |
| Tth111I | GACNNNGTC | 1 cut(s) | 586 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 57, 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 211, 976 |
| XapI | RAATTY | 1 cut(s) | 1063 |
| XhoI | CTCGAG | 2 cut(s) | 188, 791 |
| XmaI | CCCGGG | 1 cut(s) | 1069 |
| XmiI | GTMKAC | 4 cut(s) | 162, 576, 620, 962 |
| XmnI | GAANNNNTTC | 1 cut(s) | 362 |
| XspI | CTAG | 2 cut(s) | 1011, 1236 |
| Zsp2I | ATGCAT | 1 cut(s) | 1232 |