MD02G1316200.v1.1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016698
Physical Location & Seq
Reverse (-)
37070649 .. 37070972
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1316200.v1.1.491

Sequence Viewer

Length: 324 bp
ATGAGGTTCACAAGCAGGAAAATTATGGCTCTTCCAATTTTGGTGTTTGTGTTAGTGATGACAGGTTTGGTGGATCAAGGGCAGGGAACTACTTGTACAAGCACTTTCTTCTCGGCACTAGTTCAGCTAATACCCTGCAGAGTAGCAGTTGCTCCCTTCAGCCCCATTCCACCGAGTGAGACTTGCTGCAATGCCCTCAAAGTTCTTGGCCAGCCTTGCCTCTGTGTGCTCGTCAATGGCCCTCCGATCTCTGGCATTGATCGCAACATGGCCATGCAGCTCCCGGAGAAGTGCGCCGCCAACTTTGAACCATGTACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

108

Amino Acids

11.48

Weight (kDa)

8.17

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 103 5.5e-09 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 105 1.9e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07450
fragaria_vesca FvH4_7g00620
malus_domestica MD02G1316200.v1.1 MD07G1005700.v1.1
prunus_persica Prupe.2G008100_v2.0.a1 Prupe.2G008300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314811
rosa_multiflora Rmu_sc0025729.1_g000001
rosa_rugosa Rorug01G0002000
rosa_samantha Rh1AG012900 Rh1BG004500 Rh1CG011400 Rh1DG006200
rosa_wichuraiana Rw1G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 297
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 2 cut(s) 208, 270
AcuI CTGAAG 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 2 cut(s) 97, 316
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 308
AhlI ACTAGT 1 cut(s) 118
AluBI AGCT 2 cut(s) 127, 280
AluI AGCT 2 cut(s) 127, 280
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 81
AoxI GGCC 3 cut(s) 208, 238, 270
ApeKI GCWGC 2 cut(s) 186, 277
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 284
BalI TGGCCA 2 cut(s) 210, 272
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 173, 289
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 118
BfaI CTAG 2 cut(s) 119, 322
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 3 cut(s) 187, 278, 297
BlsI GCNGC 3 cut(s) 188, 279, 298
Bme1390I CCNGG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 173, 289
BshFI GGCC 3 cut(s) 210, 240, 272
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 210, 240, 272
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 3 cut(s) 73, 246, 259
BspACI CCGC 1 cut(s) 297
BspANI GGCC 3 cut(s) 210, 240, 272
BspMAI CTGCAG 1 cut(s) 140
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 95
BssMI GATC 3 cut(s) 73, 246, 259
Bst6I CTCTTC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 212
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 76, 249, 262
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 73, 246, 259
BstMWI GCNNNNNNNGC 2 cut(s) 216, 261
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 173, 289
BsuRI GGCC 3 cut(s) 210, 240, 272
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 96, 315
CviAII CATG 3 cut(s) 268, 274, 312
CviJI RGCY 8 cut(s) 29, 127, 162, 210, 214, 240, 272, 280
CviKI_1 RGCY 8 cut(s) 29, 127, 162, 210, 214, 240, 272, 280
CviQI GTAC 2 cut(s) 96, 315
DpnI GATC 3 cut(s) 75, 248, 261
DpnII GATC 3 cut(s) 73, 246, 259
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 208, 270
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 142
FaeI CATG 3 cut(s) 271, 277, 315
FaiI YATR 4 cut(s) 26, 269, 275, 313
FatI CATG 3 cut(s) 267, 273, 311
Fnu4HI GCNGC 3 cut(s) 187, 278, 297
Fsp4HI GCNGC 3 cut(s) 187, 278, 297
FspBI CTAG 2 cut(s) 119, 322
GlaI GCGC 1 cut(s) 295
GluI GCNGC 3 cut(s) 187, 278, 297
HaeIII GGCC 3 cut(s) 210, 240, 272
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 271, 277, 315
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 138, 189, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 261
Hsp92II CATG 3 cut(s) 271, 277, 315
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 3 cut(s) 73, 246, 259
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 157, 285
LpnPI CCDG 6 cut(s) 48, 68, 148, 224, 237, 297
Lsp1109I GCAGC 2 cut(s) 173, 289
MaeI CTAG 2 cut(s) 119, 322
MalI GATC 3 cut(s) 75, 248, 261
MboI GATC 3 cut(s) 73, 246, 259
MboII GAAGA 2 cut(s) 23, 100
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 2 cut(s) 210, 272
MluCI AATT 2 cut(s) 21, 36
MluNI TGGCCA 2 cut(s) 210, 272
MnlI CCTC 3 cut(s) 206, 230, 252
Mox20I TGGCCA 2 cut(s) 210, 272
MscI TGGCCA 2 cut(s) 210, 272
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 2 cut(s) 210, 272
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 216, 261
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 73, 246, 259
NlaIII CATG 3 cut(s) 271, 277, 315
NmeAIII GCCGAG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 3 cut(s) 188, 279, 298
PspPI GGNCC 1 cut(s) 239
PsrI GAACNNNNNNTAC 2 cut(s) 79, 111
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 2 cut(s) 97, 316
RsaNI GTAC 2 cut(s) 96, 315
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 3 cut(s) 187, 278, 297
Sau3AI GATC 3 cut(s) 73, 246, 259
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 8, 67, 129, 282, 320
SfcI CTRYAG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 118
Sse9I AATT 2 cut(s) 21, 36
SsiI CCGC 1 cut(s) 297
SspMI CTAG 2 cut(s) 119, 322
StyD4I CCNGG 1 cut(s) 282
TasI AATT 2 cut(s) 21, 36
TatI WGTACW 1 cut(s) 95
TauI GCSGC 1 cut(s) 299
TseI GCWGC 2 cut(s) 186, 277
XspI CTAG 2 cut(s) 119, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.