Rmu_sc0025729.1_g000001

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025729.1
OG0016698
Physical Location & Seq
Reverse (-)
449 .. 766
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025729.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atgaggcacactagaagctctaaggttcttgcaacttttgtgctcatgttagtgatgacaggtttggtggtgcatggtcaaagtactacttgtactgttaccttcttttcatcactaattcagctaataccttgtagaccagcagtggttccttttagccccatcccaccaagtgaggcttgctgcactgcactcagagctttaggccagccttgcctttgtgtgctcgtcaatggccctccgatctctggcgttgatcgcaacatggcaattcagctcccggagaagtgcaatgccaactttgaaccatgtaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

105

Amino Acids

11.26

Weight (kDa)

8.51

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07450
fragaria_vesca FvH4_7g00620
malus_domestica MD02G1316200.v1.1 MD07G1005700.v1.1
prunus_persica Prupe.2G008100_v2.0.a1 Prupe.2G008300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314811
rosa_multiflora Rmu_sc0025729.1_g000001
rosa_rugosa Rorug01G0002000
rosa_samantha Rh1AG012900 Rh1BG004500 Rh1CG011400 Rh1DG006200
rosa_wichuraiana Rw1G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 85, 94
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 4 cut(s) 18, 124, 200, 277
AluI AGCT 4 cut(s) 18, 124, 200, 277
Alw21I GWGCWC 2 cut(s) 45, 228
AoxI GGCC 2 cut(s) 205, 235
ApeKI GCWGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 45, 228
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 170
BcnI CCSGG 1 cut(s) 281
BfaI CTAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 298
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 2 cut(s) 169, 174
BshFI GGCC 2 cut(s) 207, 237
BsiHKAI GWGCWC 2 cut(s) 45, 228
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 2 cut(s) 207, 237
Bsp1286I GDGCHC 2 cut(s) 45, 228
Bsp143I GATC 2 cut(s) 243, 256
BspANI GGCC 2 cut(s) 207, 237
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 298
BssMI GATC 2 cut(s) 243, 256
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 181, 209
BstDEI CTNAG 2 cut(s) 21, 194
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 246, 259
BstMBI GATC 2 cut(s) 243, 256
BstMWI GCNNNNNNNGC 3 cut(s) 197, 213, 258
BstSCI CCNGG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 207, 237
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 150, 186
BtsIMutI CAGTG 2 cut(s) 150, 186
Cac8I GCNNGC 2 cut(s) 181, 209
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 84, 93
CviAII CATG 4 cut(s) 46, 74, 265, 309
CviJI RGCY 9 cut(s) 18, 124, 159, 179, 200, 207, 211, 237, 277
CviKI_1 RGCY 9 cut(s) 18, 124, 159, 179, 200, 207, 211, 237, 277
CviQI GTAC 2 cut(s) 84, 93
DdeI CTNAG 2 cut(s) 21, 194
DpnI GATC 2 cut(s) 245, 258
DpnII GATC 2 cut(s) 243, 256
DraIII CACNNNGTG 1 cut(s) 173
FaeI CATG 4 cut(s) 49, 77, 268, 312
FaiI YATR 4 cut(s) 47, 75, 266, 310
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 163, 195
FatI CATG 4 cut(s) 45, 73, 264, 308
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 207, 237
HapII CCGG 1 cut(s) 281
Hin1II CATG 4 cut(s) 49, 77, 268, 312
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 197, 243
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 32, 73, 186, 191, 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 213, 258
HpyF3I CTNAG 2 cut(s) 21, 194
Hsp92II CATG 4 cut(s) 49, 77, 268, 312
Kzo9I GATC 2 cut(s) 243, 256
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 5 cut(s) 45, 153, 221, 234, 294
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 97, 311
MalI GATC 2 cut(s) 245, 258
MboI GATC 2 cut(s) 243, 256
MhlI GDGCHC 2 cut(s) 45, 228
MluCI AATT 2 cut(s) 117, 270
MnlI CCTC 2 cut(s) 169, 249
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 197, 213, 258
NciI CCSGG 1 cut(s) 281
NdeII GATC 2 cut(s) 243, 256
NlaIII CATG 4 cut(s) 49, 77, 268, 312
NlaIV GGNNCC 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 2 cut(s) 85, 94
RsaNI GTAC 2 cut(s) 84, 93
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 243, 256
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 45, 228
SetI ASST 8 cut(s) 20, 27, 64, 104, 126, 133, 202, 279
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 117, 270
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 97
TasI AATT 2 cut(s) 117, 270
TatI WGTACW 2 cut(s) 83, 92
TscAI CASTG 2 cut(s) 150, 193
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 99
TspRI CASTG 2 cut(s) 150, 193
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.