Prupe.2G008100_v2.0.a1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016698
Physical Location & Seq
Forward (+)
740772 .. 741951
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G008100.1

Sequence Viewer

Length: 321 bp
ATGAGGCTAATCACTATGACTCTTCCAGTTTTGGTGGTTATGTTAGTTTTGACAGGTTTGGTGGATCAAGGGGAGGGCACCATGTGCGCAAGCACCTTCTTCTCGTCTATTGTTCAGCTAATACCTTGCAGAGCAGCAGTTGTTCCTTTTAGCCCCATCCCACCAAGTGAGACTTGCTGCAATGCCCTCAAAGCTCTTGGCCAGCCTTGCCTATGTGTGCTTGTCAATGGCCCTCCGATTTCTGGCGTCGATCGTACCATGGCAGTGCAGCTCCCAGAGAAGTGCACTGTCAACTTTGAACCATGTGAAATCATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

107

Amino Acids

11.28

Weight (kDa)

4.77

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07450
fragaria_vesca FvH4_7g00620
malus_domestica MD02G1316200.v1.1 MD07G1005700.v1.1
prunus_persica Prupe.2G008100_v2.0.a1 Prupe.2G008300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314811
rosa_multiflora Rmu_sc0025729.1_g000001
rosa_rugosa Rorug01G0002000
rosa_samantha Rh1AG012900 Rh1BG004500 Rh1CG011400 Rh1DG006200
rosa_wichuraiana Rw1G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 77
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 2 cut(s) 84, 167
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 3 cut(s) 118, 194, 271
AluI AGCT 3 cut(s) 118, 194, 271
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 1 cut(s) 72
AoxI GGCC 2 cut(s) 199, 229
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 134, 177, 268
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 230
BaeGI GKGCMC 2 cut(s) 80, 287
BalI TGGCCA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 146, 164, 280
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 3 cut(s) 135, 178, 269
BlsI GCNGC 3 cut(s) 136, 179, 270
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 80, 287
BseXI GCAGC 3 cut(s) 146, 164, 280
BsgI GTGCAG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 201, 231
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 201, 231
Bsp1286I GDGCHC 2 cut(s) 80, 287
Bsp143I GATC 2 cut(s) 64, 250
Bsp19I CCATGG 1 cut(s) 258
BspANI GGCC 2 cut(s) 201, 231
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 64, 250
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 91, 203
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 67, 253
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 64, 250
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 84, 191, 207
BstSLI GKGCMC 2 cut(s) 80, 287
BstV1I GCAGC 3 cut(s) 146, 164, 280
BsuRI GGCC 2 cut(s) 201, 231
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 285
Cac8I GCNNGC 2 cut(s) 91, 203
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 255
CviAII CATG 4 cut(s) 82, 259, 303, 313
CviJI RGCY 8 cut(s) 7, 118, 153, 194, 201, 205, 231, 271
CviKI_1 RGCY 8 cut(s) 7, 118, 153, 194, 201, 205, 231, 271
CviQI GTAC 1 cut(s) 255
DpnI GATC 2 cut(s) 66, 252
DpnII GATC 2 cut(s) 64, 250
DraIII CACNNNGTG 2 cut(s) 84, 167
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 85, 262, 306, 316
FaiI YATR 7 cut(s) 17, 41, 83, 214, 260, 304, 314
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FatI CATG 4 cut(s) 81, 258, 302, 312
Fnu4HI GCNGC 3 cut(s) 135, 178, 269
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 135, 178, 269
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 135, 178, 269
HaeIII GGCC 2 cut(s) 201, 231
HgaI GACGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 4 cut(s) 85, 262, 306, 316
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 285, 292
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 2 cut(s) 285, 292
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 129, 180, 268, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 191, 207
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 4 cut(s) 85, 262, 306, 316
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 64, 250
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 5 cut(s) 39, 39, 215, 228, 288
Lsp1109I GCAGC 3 cut(s) 146, 164, 280
MalI GATC 2 cut(s) 66, 252
MboI GATC 2 cut(s) 64, 250
MboII GAAGA 2 cut(s) 14, 91
MhlI GDGCHC 2 cut(s) 80, 287
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 316
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 3 cut(s) 67, 197, 243
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 319
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 84, 191, 207
NcoI CCATGG 1 cut(s) 258
NdeII GATC 2 cut(s) 64, 250
NlaIII CATG 4 cut(s) 85, 262, 306, 316
NlaIV GGNNCC 1 cut(s) 79
NsbI TGCGCA 1 cut(s) 88
PagI TCATGA 1 cut(s) 312
PkrI GCNGC 3 cut(s) 136, 179, 270
Ple19I CGATCG 1 cut(s) 253
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 230
PvuI CGATCG 1 cut(s) 253
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 3 cut(s) 135, 178, 269
Sau3AI GATC 2 cut(s) 64, 250
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 80, 287
SetI ASST 6 cut(s) 58, 98, 120, 127, 196, 273
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 1 cut(s) 316
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 316
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 2 cut(s) 270, 292
TseI GCWGC 3 cut(s) 134, 177, 268
TspRI CASTG 2 cut(s) 270, 292
VneI GTGCAC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.