MD07G1005700.v1.1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016698
Physical Location & Seq
Forward (+)
579047 .. 579583
537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1005700.v1.1.491

Sequence Viewer

Length: 324 bp
ATGAGGTTTACTAGCAGGAAAAATATGGCTCTTCCAATTTTGATGTTTGTGTTCGTGATGGCGGGTTTGGTGGATCAAGGGCAGGGAAGTACTTGTGCAAGCACCTTCTTCTCGGCACTAGTTCAGCTAATACCTTGCAGAGCAGCAGTTGTTCCTTTCAGCCCCATCCCCCCGAGTGAGATTTGCTGCGGTGCCCTCAAAGCTCTTGGCCAGCCTTGCCTCTGTGTGCTCGTCAATGGCCCTCCGATCTCTGGCGTTGATCGCAGTATGGCCATGCAGCTCCCGGAGAAGTGCGGCGCCAACTTTGAACCATGTACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

108

Amino Acids

11.34

Weight (kDa)

8.17

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 20 - 103 6.5e-09 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 105 7.5e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07450
fragaria_vesca FvH4_7g00620
malus_domestica MD02G1316200.v1.1 MD07G1005700.v1.1
prunus_persica Prupe.2G008100_v2.0.a1 Prupe.2G008300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314811
rosa_multiflora Rmu_sc0025729.1_g000001
rosa_rugosa Rorug01G0002000
rosa_samantha Rh1AG012900 Rh1BG004500 Rh1CG011400 Rh1DG006200
rosa_wichuraiana Rw1G000550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 191, 296
AciI CCGC 3 cut(s) 62, 189, 294
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 2 cut(s) 208, 270
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 91, 316
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 308
AhlI ACTAGT 1 cut(s) 118
AluBI AGCT 3 cut(s) 127, 203, 280
AluI AGCT 3 cut(s) 127, 203, 280
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 3 cut(s) 208, 238, 270
ApeKI GCWGC 3 cut(s) 143, 186, 277
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 196
BalI TGGCCA 2 cut(s) 210, 272
BanI GGYRCC 2 cut(s) 191, 296
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 155, 173, 289
BccI CCATC 2 cut(s) 52, 173
BcnI CCSGG 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 118
BfaI CTAG 3 cut(s) 12, 119, 322
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 4 cut(s) 144, 187, 278, 295
BlsI GCNGC 4 cut(s) 145, 188, 279, 296
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 193, 298
BmrFI CCNGG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 3 cut(s) 155, 173, 289
BshFI GGCC 3 cut(s) 210, 240, 272
BshNI GGYRCC 2 cut(s) 191, 296
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 251
BsnI GGCC 3 cut(s) 210, 240, 272
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 196, 231
Bsp143I GATC 3 cut(s) 73, 246, 259
BspACI CCGC 3 cut(s) 62, 189, 294
BspANI GGCC 3 cut(s) 210, 240, 272
BspLI GGNNCC 2 cut(s) 193, 298
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 191, 296
BssMI GATC 3 cut(s) 73, 246, 259
BssNI GRCGYC 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 100, 212
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 76, 249, 262
BstMBI GATC 3 cut(s) 73, 246, 259
BstMWI GCNNNNNNNGC 3 cut(s) 200, 216, 261
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 155, 173, 289
BsuRI GGCC 3 cut(s) 210, 240, 272
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 100, 212
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 90, 315
CviAII CATG 2 cut(s) 274, 312
CviJI RGCY 9 cut(s) 29, 127, 162, 203, 210, 214, 240, 272, 280
CviKI_1 RGCY 9 cut(s) 29, 127, 162, 203, 210, 214, 240, 272, 280
CviQI GTAC 2 cut(s) 90, 315
DinI GGCGCC 1 cut(s) 298
DpnI GATC 3 cut(s) 75, 248, 261
DpnII GATC 3 cut(s) 73, 246, 259
EaeI YGGCCR 2 cut(s) 208, 270
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
FaeI CATG 2 cut(s) 277, 315
FaiI YATR 4 cut(s) 26, 269, 275, 313
FatI CATG 2 cut(s) 273, 311
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 144, 187, 278, 295
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 144, 187, 278, 295
FspBI CTAG 3 cut(s) 12, 119, 322
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 144, 187, 278, 295
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 3 cut(s) 210, 240, 272
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 277, 315
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 98, 138, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 216, 261
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 277, 315
HspAI GCGC 1 cut(s) 297
KasI GGCGCC 1 cut(s) 296
Kzo9I GATC 3 cut(s) 73, 246, 259
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 4 cut(s) 68, 224, 237, 297
Lsp1109I GCAGC 3 cut(s) 155, 173, 289
MaeI CTAG 3 cut(s) 12, 119, 322
MalI GATC 3 cut(s) 75, 248, 261
MboI GATC 3 cut(s) 73, 246, 259
MboII GAAGA 2 cut(s) 23, 100
MhlI GDGCHC 2 cut(s) 196, 231
MlsI TGGCCA 2 cut(s) 210, 272
MluCI AATT 1 cut(s) 36
MluNI TGGCCA 2 cut(s) 210, 272
Mly113I GGCGCC 1 cut(s) 297
MnlI CCTC 3 cut(s) 206, 230, 252
Mox20I TGGCCA 2 cut(s) 210, 272
MscI TGGCCA 2 cut(s) 210, 272
Msp20I TGGCCA 2 cut(s) 210, 272
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 200, 216, 261
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 73, 246, 259
NlaIII CATG 2 cut(s) 277, 315
NlaIV GGNNCC 2 cut(s) 193, 298
NmeAIII GCCGAG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 4 cut(s) 145, 188, 279, 296
PluTI GGCGCC 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 193, 298
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 2 cut(s) 91, 316
RsaNI GTAC 2 cut(s) 90, 315
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 4 cut(s) 144, 187, 278, 295
Sau3AI GATC 3 cut(s) 73, 246, 259
Sau96I GGNCC 1 cut(s) 239
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 2 cut(s) 196, 231
SetI ASST 7 cut(s) 8, 107, 129, 136, 205, 282, 320
SfoI GGCGCC 1 cut(s) 298
SpeI ACTAGT 1 cut(s) 118
Sse9I AATT 1 cut(s) 36
SsiI CCGC 3 cut(s) 62, 189, 294
SspDI GGCGCC 1 cut(s) 296
SspMI CTAG 3 cut(s) 12, 119, 322
StyD4I CCNGG 1 cut(s) 282
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 297
TseI GCWGC 3 cut(s) 143, 186, 277
XspI CTAG 3 cut(s) 12, 119, 322
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.