MD03G1114800.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017273
Physical Location & Seq
Reverse (-)
10028553 .. 10030781
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1114800.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGATGTCCGAAGATGCGCTTTTAGTTCCCTCCACCATCACAGGGTTTGCTCAAGAGCCCGATTCCAACCTTAACCCTAACCCTAATATAAATAATCAATTCAAAAGGAAGAGAAGTTTACCTGGAACGCCAGATCCAGATGCAGAAGTGATAGCTATGTCCCCAAAATCTCTAATGGCCACAAATCGGTTCGTTTGCGAAGTTTGCAACAAGGGTTTCCAGAGAGACCAGAACTTGCAGCTTCACCGACGTGGCCACAACCTTCCGTGGAAGCTCAAACAAAGATCAAAAACAGAAGTTATTCGGAAGAAGGTGTACGTGTGCCCGGAAAAGACTTGCGTGCACCACGAGCCATCGCGAGCGCTCGGAGACCTCACCGGAATCAAAAAGCACTTCAGCCGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGAAATACGCAGTTCAATCGGATTGGAAGGCACATAGCAAAGTTTGTGGGACTAGAGAGTATAGATGTGACTGTGGCACACTCTTTTCCAGGAAGGATAGCTTCATAACCCACAGAGCCTTCTGTGATGCATTGGCGGCTGAGCAAAGTGCAAGATTTTGCTCAGCCTCAACTATTAATCCAAGCTTCATGAATGGGTCTATTACCAATAATGCCCATCAACCACAAAGTATCCCAAATTTTATACCAATGTTTCAGTCGGAATTTGCTGGCTCTGACCATCCAGCAGCCAACAATTCTCATCTCAGCTCCAATGCTTTTATGCCAGTCATGCTGCAAACGGCATCAATGGACATGTTTGGACCATCTTCGTCGTCATCTCAGATGCAATGGCTCATTAACAACAAAAAGTTCGTGGAAGAATCATCATTTGCAAATGCCAACAATCTCTCTCTGTCATCACCATTGATAATTCGGGGAGTACTAAAGGAGGAGGAAGAATCCAAAGGGAGTTTCTCTGAAACAATTACCACCACTACCACCTCTTTCTATAATTACAACATTAATAACAATCAGAACCACCACCAACAAAAACCCATGTCAGCCACAGCACTTCTGCAAAAAGCAGCTCGAATGGGATCTACAACCAGCAACAACCCAGCTACAACATTCAACGACACCGCCTTTAACTTCAATGATTTGGTGAATTCTATGTCTCCTTCGTCAACTCAAGGAGACACAATTGGAGATGGGTCACTGTTCTTGAGCAACAAACACTTGATGATGTCAGCTGGAGCAGCAGCCATGACAAAACAAGGACAAAGTGAGCAAAGTAGTTTAACCAGAGACTTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

433

Amino Acids

47.98

Weight (kDa)

9.1

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 102 - 136 2.7e-22 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 140 - 164 3e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 167 - 201 6.4e-21 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017273)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32700
malus_domestica MD03G1114800.v1.1 MD11G1133100.v1.1
prunus_persica Prupe.6G098800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059771
rosa_laevigata RLG00000035327
rosa_roxburghii Rroxscaffold_1G00020810
rosa_rugosa Rorug05G0325000
rosa_samantha Rh5AG390400 Rh5BG401800 Rh5CG425900 Rh5DG418200
rosa_wichuraiana Rw5G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 578, 1122
AclWI GGATC 2 cut(s) 128, 1087
AcoI YGGCCR 2 cut(s) 177, 253
AcsI RAATTY 3 cut(s) 679, 704, 1147
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 2 cut(s) 317, 924
AfeI AGCGCT 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 42, 186
AflIII ACRYGT 2 cut(s) 318, 795
AgsI TTSAA 4 cut(s) 103, 458, 1114, 1135
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 2 cut(s) 121, 530
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AleI CACNNNNGTG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
AluBI AGCT 9 cut(s) 155, 241, 274, 543, 627, 750, 1070, 1103, 1232
AluI AGCT 9 cut(s) 155, 241, 274, 543, 627, 750, 1070, 1103, 1232
Alw21I GWGCWC 2 cut(s) 345, 440
Alw26I GTCTC 5 cut(s) 219, 363, 1161, 1170, 1281
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 2 cut(s) 128, 1087
Aor51HI AGCGCT 1 cut(s) 363
AoxI GGCC 2 cut(s) 177, 253
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 6 cut(s) 238, 728, 775, 1067, 1238, 1241
ApoI RAATTY 3 cut(s) 679, 704, 1147
AseI ATTAAT 2 cut(s) 618, 1005
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 19, 364
AspS9I GGNCC 1 cut(s) 803
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 4 cut(s) 236, 367, 894, 1156
AvaII GGWCC 1 cut(s) 803
BaeGI GKGCMC 2 cut(s) 326, 345
BalI TGGCCA 2 cut(s) 179, 255
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BauI CACGAG 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 345, 440
BbvI GCAGC 6 cut(s) 250, 740, 762, 1079, 1250, 1253
BccI CCATC 6 cut(s) 44, 361, 666, 729, 814, 1184
BceAI ACGGC 2 cut(s) 424, 798
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 2 cut(s) 123, 532
BciVI GTATCC 1 cut(s) 683
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 5 cut(s) 219, 363, 1161, 1170, 1281
BfaI CTAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 365
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 7 cut(s) 239, 579, 729, 776, 1068, 1239, 1242
BlpI GCTNAGC 2 cut(s) 582, 604
BlsI GCNGC 7 cut(s) 240, 580, 730, 777, 1069, 1240, 1243
BmcAI AGTACT 1 cut(s) 924
Bme1390I CCNGG 3 cut(s) 123, 326, 532
Bme18I GGWCC 1 cut(s) 803
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 803
BmrFI CCNGG 3 cut(s) 123, 326, 532
BmsI GCATC 5 cut(s) 4, 130, 559, 794, 816
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 1254
Bpu1102I GCTNAGC 2 cut(s) 582, 604
BpuEI CTTGAG 3 cut(s) 36, 1155, 1225
BpuMI CCSGG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 319
BsaI GGTCTC 2 cut(s) 219, 363
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 186
Bse1I ACTGG 1 cut(s) 767
Bse3DI GCAATG 1 cut(s) 836
BseBI CCWGG 2 cut(s) 123, 532
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 42, 186
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 4 cut(s) 573, 618, 760, 836
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 2 cut(s) 326, 345
BseXI GCAGC 6 cut(s) 250, 740, 762, 1079, 1250, 1253
BseYI CCCAGC 1 cut(s) 1099
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 179, 255
BsiHKAI GWGCWC 2 cut(s) 345, 440
BsiSI CCGG 2 cut(s) 326, 378
BslFI GGGAC 2 cut(s) 145, 505
BslI CCNNNNNNNGG 2 cut(s) 42, 186
BsmAI GTCTC 5 cut(s) 219, 363, 1161, 1170, 1281
BsmFI GGGAC 2 cut(s) 145, 505
BsnI GGCC 2 cut(s) 179, 255
Bso31I GGTCTC 2 cut(s) 219, 363
Bsp1286I GDGCHC 4 cut(s) 60, 326, 345, 440
Bsp143I GATC 3 cut(s) 133, 284, 1079
Bsp1720I GCTNAGC 2 cut(s) 582, 604
Bsp68I TCGCGA 1 cut(s) 358
BspACI CCGC 2 cut(s) 578, 1122
BspANI GGCC 2 cut(s) 179, 255
BspCNI CTCAG 4 cut(s) 574, 617, 759, 835
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 630
BspPI GGATC 2 cut(s) 128, 1087
BspTNI GGTCTC 2 cut(s) 219, 363
BsrDI GCAATG 1 cut(s) 836
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 3 cut(s) 133, 284, 1079
BssSI CACGAG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 123, 532
Bst4CI ACNGT 2 cut(s) 515, 1200
Bst6I CTCTTC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 341, 360, 712
BstDEI CTNAG 4 cut(s) 582, 604, 746, 822
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 19, 364
BstKTI GATC 3 cut(s) 136, 287, 1082
BstMAI GTCTC 5 cut(s) 219, 363, 1161, 1170, 1281
BstMBI GATC 3 cut(s) 133, 284, 1079
BstMWI GCNNNNNNNGC 5 cut(s) 204, 349, 578, 772, 1238
BstNI CCWGG 2 cut(s) 123, 532
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 3 cut(s) 121, 324, 530
BstSLI GKGCMC 2 cut(s) 326, 345
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 6 cut(s) 250, 740, 762, 1079, 1250, 1253
BstX2I RGATCY 2 cut(s) 133, 1079
BstYI RGATCY 2 cut(s) 133, 1079
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 179, 255
BtgI CCRYGG 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 1196
BtuMI TCGCGA 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 341, 360, 712
CciI TCATGA 1 cut(s) 630
CfoI GCGC 2 cut(s) 19, 364
Cfr13I GGNCC 1 cut(s) 803
Csp6I GTAC 2 cut(s) 316, 923
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 5 cut(s) 631, 772, 796, 1039, 1246
CviQI GTAC 2 cut(s) 316, 923
DdeI CTNAG 4 cut(s) 582, 604, 746, 822
DpnI GATC 3 cut(s) 135, 286, 1081
DpnII GATC 3 cut(s) 133, 284, 1079
EaeI YGGCCR 2 cut(s) 177, 253
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 2 cut(s) 219, 363
Eco47I GGWCC 1 cut(s) 803
Eco47III AGCGCT 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 1147
EcoRII CCWGG 2 cut(s) 121, 530
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 5 cut(s) 634, 775, 799, 1042, 1249
FalI AAGNNNNNCTT 3 cut(s) 35, 527, 559
FaqI GGGAC 2 cut(s) 145, 505
FatI CATG 5 cut(s) 630, 771, 795, 1038, 1245
Fnu4HI GCNGC 7 cut(s) 239, 579, 729, 776, 1068, 1239, 1242
FokI GGATG 1 cut(s) 708
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 7 cut(s) 239, 579, 729, 776, 1068, 1239, 1242
FspBI CTAG 1 cut(s) 495
GlaI GCGC 2 cut(s) 18, 363
GluI GCNGC 7 cut(s) 239, 579, 729, 776, 1068, 1239, 1242
GsaI CCCAGC 1 cut(s) 1103
GsuI CTGGAG 1 cut(s) 1254
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 179, 255
HapII CCGG 2 cut(s) 326, 378
HhaI GCGC 2 cut(s) 19, 364
Hin1II CATG 5 cut(s) 634, 775, 799, 1042, 1249
Hin6I GCGC 2 cut(s) 17, 362
HinP1I GCGC 2 cut(s) 17, 362
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 4 cut(s) 62, 381, 863, 941
HpaII CCGG 2 cut(s) 326, 378
HphI GGTGA 4 cut(s) 236, 367, 894, 1156
Hpy166II GTNNAC 4 cut(s) 119, 316, 343, 1167
Hpy188I TCNGA 9 cut(s) 10, 306, 368, 463, 703, 718, 825, 961, 1017
Hpy188III TCNNGA 6 cut(s) 53, 137, 220, 357, 631, 1204
Hpy8I GTNNAC 4 cut(s) 119, 316, 343, 1167
Hpy99I CGWCG 2 cut(s) 252, 817
HpyAV CCTTC 6 cut(s) 272, 304, 463, 529, 571, 1170
HpyCH4III ACNGT 2 cut(s) 515, 1200
HpyCH4IV ACGT 2 cut(s) 250, 318
HpyF10VI GCNNNNNNNGC 5 cut(s) 204, 349, 578, 772, 1238
HpyF3I CTNAG 4 cut(s) 582, 604, 746, 822
HpySE526I ACGT 2 cut(s) 250, 318
Hsp92II CATG 5 cut(s) 634, 775, 799, 1042, 1249
HspAI GCGC 2 cut(s) 17, 362
Kzo9I GATC 3 cut(s) 133, 284, 1079
LmnI GCTCC 2 cut(s) 755, 1235
Lsp1109I GCAGC 6 cut(s) 250, 740, 762, 1079, 1250, 1253
LweI GCATC 5 cut(s) 4, 130, 559, 794, 816
MaeI CTAG 1 cut(s) 495
MaeII ACGT 2 cut(s) 250, 318
MaeIII GTNAC 2 cut(s) 509, 1194
MalI GATC 3 cut(s) 135, 286, 1081
MboI GATC 3 cut(s) 133, 284, 1079
MboII GAAGA 7 cut(s) 23, 121, 319, 427, 801, 872, 950
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 2 cut(s) 133, 1079
MhlI GDGCHC 4 cut(s) 60, 326, 345, 440
MlsI TGGCCA 2 cut(s) 179, 255
MluCI AATT 9 cut(s) 98, 679, 704, 736, 912, 966, 994, 1147, 1182
MluNI TGGCCA 2 cut(s) 179, 255
MmeI TCCRAC 2 cut(s) 90, 681
MnlI CCTC 6 cut(s) 40, 383, 619, 925, 928, 994
Mox20I TGGCCA 2 cut(s) 179, 255
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 2 cut(s) 179, 255
MseI TTAA 6 cut(s) 72, 618, 840, 1005, 1128, 1280
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 2 cut(s) 179, 255
MspA1I CMGCKG 1 cut(s) 1232
MspI CCGG 2 cut(s) 326, 378
MspR9I CCNGG 3 cut(s) 123, 326, 532
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 2 cut(s) 123, 532
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 5 cut(s) 204, 349, 578, 772, 1238
NciI CCSGG 1 cut(s) 326
NdeII GATC 3 cut(s) 133, 284, 1079
NlaIII CATG 5 cut(s) 634, 775, 799, 1042, 1249
NmuCI GTSAC 2 cut(s) 509, 1194
NruI TCGCGA 1 cut(s) 358
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 799
OliI CACNNNNGTG 1 cut(s) 249
PagI TCATGA 1 cut(s) 630
PciI ACATGT 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 62, 381, 863, 941
PfoI TCCNGGA 1 cut(s) 530
PkrI GCNGC 7 cut(s) 240, 580, 730, 777, 1069, 1240, 1243
Ppu21I YACGTR 1 cut(s) 319
PscI ACATGT 1 cut(s) 795
PshBI ATTAAT 2 cut(s) 618, 1005
Psp6I CCWGG 2 cut(s) 121, 530
PspFI CCCAGC 1 cut(s) 1099
PspGI CCWGG 2 cut(s) 121, 530
PspPI GGNCC 1 cut(s) 803
PsuI RGATCY 2 cut(s) 133, 1079
PvuII CAGCTG 1 cut(s) 1232
RruI TCGCGA 1 cut(s) 358
RsaI GTAC 2 cut(s) 317, 924
RsaNI GTAC 2 cut(s) 316, 923
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 6 cut(s) 72, 618, 840, 1005, 1128, 1280
SatI GCNGC 7 cut(s) 239, 579, 729, 776, 1068, 1239, 1242
Sau3AI GATC 3 cut(s) 133, 284, 1079
Sau96I GGNCC 1 cut(s) 803
ScaI AGTACT 1 cut(s) 924
ScrFI CCNGG 3 cut(s) 123, 326, 532
SduI GDGCHC 4 cut(s) 60, 326, 345, 440
SfaNI GCATC 5 cut(s) 4, 130, 559, 794, 816
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 3 cut(s) 51, 1170, 1204
SmoI CTYRAG 3 cut(s) 51, 1170, 1204
Sse9I AATT 9 cut(s) 98, 679, 704, 736, 912, 966, 994, 1147, 1182
SsiI CCGC 2 cut(s) 578, 1122
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 121, 324, 530
TaaI ACNGT 2 cut(s) 515, 1200
TaiI ACGT 2 cut(s) 253, 321
TaqI TCGA 1 cut(s) 1072
TasI AATT 9 cut(s) 98, 679, 704, 736, 912, 966, 994, 1147, 1182
TatI WGTACW 1 cut(s) 922
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 4 cut(s) 62, 381, 863, 941
Tru1I TTAA 6 cut(s) 72, 618, 840, 1005, 1128, 1280
Tru9I TTAA 6 cut(s) 72, 618, 840, 1005, 1128, 1280
TscAI CASTG 1 cut(s) 1203
TseFI GTSAC 2 cut(s) 509, 1194
TseI GCWGC 6 cut(s) 238, 728, 775, 1067, 1238, 1241
Tsp45I GTSAC 2 cut(s) 509, 1194
TspDTI ATGAA 3 cut(s) 535, 619, 647
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 1203
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 803
VspI ATTAAT 2 cut(s) 618, 1005
XapI RAATTY 3 cut(s) 679, 704, 1147
XceI RCATGY 1 cut(s) 799
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.