Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

38973875 .. 38978909

Gene Structure 5035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0325000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCATAAGAACAAGGGAGGCGACAGAGGGCGACAAATGGGTAGGAAGAACCCGAACCCGAAGCCGGAAACCAAGGACCAAGAATTGGACTCCACCGACCTAAGAATGGACATGAGGGAGATTTCCAAGCGTATTGAGCTCTTGGGCTCTTCTCATATGACATGGAAGGAGAGGAAGGAGTTGGAGAATAAGAAGGTGGTTGCTCTAGGCGGAAAGCCTCCAAAGAAGCAGAGACTACCTCTAAGTATAGCAAGAGTGGTCATGAAGAAACAAAAGGACAGGGAGCAAAAGCAGCTACAAGAGAATGTGATTCTTGGACGTTTTGGAGGAAAATCCGGAGGTGGCTCAAAAAGATCTGTGGAGAAGCGAAGGCCTGAGGACAGGGTTCTAAGAGCAAGTGAAGGTTACTTCAAAAATGGTGTACTTGATGTGAAGCATTTGTTACGTCCAACATCATCCAGAGACAGGGATGCTGCTGCCCGTGTGAACTTCTCAGGTCCAAAGAAGGGAGGTGGAAAGAAGGGAGGTGGAAAAAACAAAGGGAAGAAGGGCGGTAAGAAGCGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

189

Amino Acids

21.24

Weight (kDa)

10.82

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FSAF1	PF15375	6 - 123	4.1e-16	40S small subunit processome assembly factor 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	2 cut(s)	210, 552
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	5 cut(s)	64, 85, 106, 465, 506
AgsI	TTSAA	1 cut(s)	412
AluBI	AGCT	2 cut(s)	139, 295
AluI	AGCT	2 cut(s)	139, 295
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	226, 456
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	292, 473, 476
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	76, 497
AvaII	GGWCC	2 cut(s)	76, 497
AxyI	CCTNAGG	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	141, 149
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	304, 460, 463
BcoDI	GTCTC	2 cut(s)	226, 456
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	565
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	3 cut(s)	293, 474, 477
BlsI	GCNGC	3 cut(s)	294, 475, 478
Bme18I	GGWCC	2 cut(s)	76, 497
BmgT120I	GGNCC	2 cut(s)	76, 497
BmsI	GCATC	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 85, 106, 465, 506
Bse21I	CCTNAGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	455, 475
BseLI	CCNNNNNNNGG	5 cut(s)	64, 85, 106, 465, 506
BseMII	CTCAG	2 cut(s)	366, 507
BseXI	GCAGC	3 cut(s)	304, 460, 463
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	65, 336
BslI	CCNNNNNNNGG	5 cut(s)	64, 85, 106, 465, 506
BsmAI	GTCTC	2 cut(s)	226, 456
BsnI	GGCC	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	141, 149
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	2 cut(s)	210, 552
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	367, 506
BspEI	TCCGGA	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	5 cut(s)	101, 242, 375, 389, 493
BstF5I	GGATG	2 cut(s)	455, 475
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	226, 456
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 292
BstV1I	GCAGC	3 cut(s)	304, 460, 463
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	455, 475
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	76, 497
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	3 cut(s)	112, 162, 262
CviJI	RGCY	7 cut(s)	64, 139, 147, 217, 295, 345, 373
CviKI_1	RGCY	7 cut(s)	64, 139, 147, 217, 295, 345, 373
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	5 cut(s)	101, 242, 375, 389, 493
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	141, 149
Eco47I	GGWCC	2 cut(s)	76, 497
Eco53kI	GAGCTC	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	141, 149
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	115, 165, 265
FaiI	YATR	7 cut(s)	6, 113, 156, 158, 163, 248, 263
FatI	CATG	3 cut(s)	111, 161, 261
FauNDI	CATATG	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	293, 474, 477
FokI	GGATG	2 cut(s)	442, 482
FriOI	GRGCYC	2 cut(s)	141, 149
Fsp4HI	GCNGC	3 cut(s)	293, 474, 477
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	3 cut(s)	293, 474, 477
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	2 cut(s)	65, 336
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	3 cut(s)	115, 165, 265
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	89, 310
HpaII	CCGG	2 cut(s)	65, 336
Hpy166II	GTNNAC	2 cut(s)	422, 487
Hpy188III	TCNNGA	3 cut(s)	262, 336, 459
Hpy8I	GTNNAC	2 cut(s)	422, 487
HpyAV	CCTTC	8 cut(s)	160, 169, 187, 363, 395, 499, 514, 541
HpyCH4IV	ACGT	2 cut(s)	319, 445
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 292
HpyF3I	CTNAG	5 cut(s)	101, 242, 375, 389, 493
HpySE526I	ACGT	2 cut(s)	319, 445
Hsp92II	CATG	3 cut(s)	115, 165, 265
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	353
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	78, 265, 349, 367, 387, 451, 472, 480
Lsp1109I	GCAGC	3 cut(s)	304, 460, 463
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	319, 445
MaeIII	GTNAC	2 cut(s)	404, 441
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	4 cut(s)	58, 141, 277, 556
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	141, 149
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	162, 473
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	335
MspI	CCGG	2 cut(s)	65, 336
MwoI	GCNNNNNNNGC	2 cut(s)	136, 292
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	115, 165, 265
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	294, 475, 478
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	76, 497
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	154
SatI	GCNGC	3 cut(s)	293, 474, 477
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	2 cut(s)	76, 497
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	141, 149
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	2 cut(s)	76, 497
Sse9I	AATT	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	2 cut(s)	210, 552
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	2 cut(s)	322, 448
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	292, 473, 476
TspDTI	ATGAA	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	76, 497
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.