Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

57185912 .. 57186905

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACCATGGCCTTCGTCCCAGACATAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGTCCATGTTTAGTGAGGTGAGTGCATGCAATGATCTTCTCTTAAGTACTCAGTGTCTTCTCACAGAAAGTGACTTCAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATATGTATATTCAATGAAAATGATGCAGTTAGTGCCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAAGGTCTCTACAGTGGGCCTCCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

147

Amino Acids

16.16

Weight (kDa)

4.77

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	27 - 146	9.1e-16	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	218, 277
AluBI	AGCT	6 cut(s)	65, 92, 226, 359, 368, 376
AluI	AGCT	6 cut(s)	65, 92, 226, 359, 368, 376
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	3 cut(s)	10, 55, 428
ApeKI	GCWGC	3 cut(s)	89, 223, 356
AspS9I	GGNCC	3 cut(s)	4, 55, 428
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	101, 235, 368
BccI	CCATC	2 cut(s)	68, 106
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	166
BisI	GCNGC	3 cut(s)	90, 224, 357
BlsI	GCNGC	3 cut(s)	91, 225, 358
BmcAI	AGTACT	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 55, 428
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	101, 235, 368
BsgI	GTGCAG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	12, 57, 430
BsiEI	CGRYCG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	3, 353
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	3, 353
BsnI	GGCC	3 cut(s)	12, 57, 430
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	106, 157, 241, 385
Bsp19I	CCATGG	1 cut(s)	7
BspANI	GGCC	3 cut(s)	12, 57, 430
BspCNI	CTCAG	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	4 cut(s)	106, 157, 241, 385
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	238, 350, 425
BstAFI	CTTAAG	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	59, 63, 151
BstDEI	CTNAG	3 cut(s)	174, 369, 435
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	109, 160, 244, 388
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	106, 157, 241, 385
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 296, 365
BstNSI	RCATGY	2 cut(s)	87, 153
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	3 cut(s)	101, 235, 368
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	12, 57, 430
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	182, 430
Cac8I	GCNNGC	3 cut(s)	59, 63, 151
Cfr13I	GGNCC	3 cut(s)	4, 55, 428
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	4 cut(s)	8, 84, 130, 150
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	3 cut(s)	174, 369, 435
DpnI	GATC	4 cut(s)	108, 159, 243, 387
DpnII	GATC	4 cut(s)	106, 157, 241, 385
DraI	TTTAAA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	4 cut(s)	11, 87, 133, 153
FaqI	GGGAC	2 cut(s)	3, 353
FatI	CATG	4 cut(s)	7, 83, 129, 149
Fnu4HI	GCNGC	3 cut(s)	90, 224, 357
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	90, 224, 357
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	3 cut(s)	90, 224, 357
HaeIII	GGCC	3 cut(s)	12, 57, 430
Hin1II	CATG	4 cut(s)	11, 87, 133, 153
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	23, 73, 407
HpyCH4III	ACNGT	3 cut(s)	238, 350, 425
HpyCH4V	TGCA	4 cut(s)	89, 149, 153, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 296, 365
HpyF3I	CTNAG	3 cut(s)	174, 369, 435
Hsp92II	CATG	4 cut(s)	11, 87, 133, 153
Kzo9I	GATC	4 cut(s)	106, 157, 241, 385
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	8 cut(s)	34, 56, 71, 75, 117, 187, 312, 313
Lsp1109I	GCAGC	3 cut(s)	101, 235, 368
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	4 cut(s)	108, 159, 243, 387
MboI	GATC	4 cut(s)	106, 157, 241, 385
MboII	GAAGA	5 cut(s)	28, 152, 173, 315, 380
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	133, 310, 441
MseI	TTAA	3 cut(s)	123, 167, 257
MspA1I	CMGCKG	3 cut(s)	65, 92, 226
MspCI	CTTAAG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	89, 296, 365
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	4 cut(s)	106, 157, 241, 385
NlaIII	CATG	4 cut(s)	11, 87, 133, 153
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	2 cut(s)	87, 153
PaeI	GCATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	91, 225, 358
PspPI	GGNCC	3 cut(s)	4, 55, 428
PvuII	CAGCTG	3 cut(s)	65, 92, 226
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	123, 167, 257
SatI	GCNGC	3 cut(s)	90, 224, 357
Sau3AI	GATC	4 cut(s)	106, 157, 241, 385
Sau96I	GGNCC	3 cut(s)	4, 55, 428
ScaI	AGTACT	1 cut(s)	172
SetI	ASST	8 cut(s)	67, 94, 144, 228, 361, 370, 378, 418
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SphI	GCATGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	238, 350, 425
TaqI	TCGA	1 cut(s)	240
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	3 cut(s)	123, 167, 257
Tru9I	TTAA	3 cut(s)	123, 167, 257
TscAI	CASTG	2 cut(s)	182, 430
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	89, 223, 356
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	28, 294
TspRI	CASTG	2 cut(s)	182, 430
Vha464I	CTTAAG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	2 cut(s)	87, 153
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.