Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Reverse (-)

56863679 .. 56865668

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG344900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAACAAGACATTGTTCGAGCTTTCCTCAAAGACAGAAACCTTAAGGAGTTGAGATCTCAAGAATATGAGGTGATGTTGGTGACATCAGGAGCTGTGGCCCTTGGTCATCAAGTGCTGAGAGACAGGATATCAGTTCACAACAGTAGTTGCAGCTCTCCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGGTGGCTCTCTTTAAGACCGTGTTTAGTGAGGAAGATGTGACAGAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAATACCAGAACAGATCCATATGAGGATTCTTCTGGTATATTTTGGGATAATGACTTGGGCATCCAAGTGACACAAATTCAGAGCTCATTCATTCATACATACATAAAGGAGAGGCATCAAGGCGAAGTCACTTTTGGAGTAAAATCAAGAGTGGGACGAGGGGGAATGGCAGCGAAAGTAAAGGCTGCTGTTGATGCAGCTTCTGCTGGCATCCCTGTTGTCATCACCAGTGGATTCGATGGCCAGAGTCCTTCAAGGAGAACGCGTTGGGACTCTATTTCCTCTAGATGCAAATACAGGGGGGCCCTTTATTTGAAAATGCAAGAGAGATGGCCGTTGCAGCTAAGGAAAGTTCTAGACGGCTTCAGGTGGCTTTGTCTGCTTCATGTACAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

7.66

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	14 - 135	6.5e-09	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	658
AclI	AACGTT	1 cut(s)	787
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	634, 725
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	742
AfaI	GTAC	1 cut(s)	783
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	656
AgsI	TTSAA	4 cut(s)	317, 376, 648, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	2 cut(s)	95, 596
AoxI	GGCC	4 cut(s)	99, 634, 696, 725
ApaI	GGGCCC	1 cut(s)	700
ApeKI	GCWGC	7 cut(s)	153, 203, 322, 563, 578, 590, 733
ApoI	RAATTY	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	100, 696, 697
AsuHPI	GGTGA	3 cut(s)	85, 94, 610
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	636
BanII	GRGCYC	2 cut(s)	479, 700
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	7 cut(s)	165, 215, 334, 565, 575, 602, 745
BccI	CCATC	3 cut(s)	182, 626, 717
BceAI	ACGGC	2 cut(s)	712, 769
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	678, 749
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	7 cut(s)	154, 204, 323, 564, 579, 591, 734
BlsI	GCNGC	7 cut(s)	155, 205, 324, 565, 580, 592, 735
BmgT120I	GGNCC	3 cut(s)	100, 696, 697
BmiI	GGNNCC	2 cut(s)	697, 698
BmsI	GCATC	6 cut(s)	376, 462, 517, 577, 612, 671
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bse1I	ACTGG	2 cut(s)	189, 621
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	193, 453, 603
BseMII	CTCAG	2 cut(s)	110, 287
BseNI	ACTGG	2 cut(s)	189, 621
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	7 cut(s)	165, 215, 334, 565, 575, 602, 745
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	658
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	101, 636, 698, 727
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	479
BslFI	GGGAC	2 cut(s)	561, 677
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	561, 677
BsnI	GGCC	4 cut(s)	101, 636, 698, 727
Bsp120I	GGGCCC	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	479, 700
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	56, 163, 220, 340, 406
BspANI	GGCC	4 cut(s)	101, 636, 698, 727
BspCNI	CTCAG	2 cut(s)	111, 286
BspFNI	CGCG	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	697, 698
BspPI	GGATC	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	189, 621
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	5 cut(s)	56, 163, 220, 340, 406
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	146, 244, 337
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	2 cut(s)	177, 601
BstDEI	CTNAG	3 cut(s)	119, 273, 737
BstF5I	GGATG	3 cut(s)	193, 453, 603
BstFNI	CGCG	1 cut(s)	658
BstKTI	GATC	5 cut(s)	59, 166, 223, 343, 409
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	5 cut(s)	56, 163, 220, 340, 406
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 587, 596, 733, 772
BstNSI	RCATGY	1 cut(s)	201
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	658
BstV1I	GCAGC	7 cut(s)	165, 215, 334, 565, 575, 602, 745
BstX2I	RGATCY	2 cut(s)	56, 406
BstYI	RGATCY	2 cut(s)	56, 406
BsuRI	GGCC	4 cut(s)	101, 636, 698, 727
BtsCI	GGATG	3 cut(s)	193, 453, 603
BtsIMutI	CAGTG	2 cut(s)	281, 628
Cac8I	GCNNGC	2 cut(s)	177, 601
CaiI	CAGNNNCTG	2 cut(s)	95, 596
Cfr13I	GGNCC	3 cut(s)	100, 696, 697
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	2 cut(s)	198, 779
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	3 cut(s)	119, 273, 737
DpnI	GATC	5 cut(s)	58, 165, 222, 342, 408
DpnII	GATC	5 cut(s)	56, 163, 220, 340, 406
DraI	TTTAAA	1 cut(s)	357
EaeI	YGGCCR	2 cut(s)	634, 725
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	479, 700
Eco32I	GATATC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	477
EcoO109I	RGGNCCY	2 cut(s)	696, 697
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	479, 700
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	201, 782
FaqI	GGGAC	2 cut(s)	561, 677
FatI	CATG	2 cut(s)	197, 778
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	7 cut(s)	154, 204, 323, 564, 579, 591, 734
FokI	GGATG	3 cut(s)	200, 440, 590
FriOI	GRGCYC	2 cut(s)	479, 700
Fsp4HI	GCNGC	7 cut(s)	154, 204, 323, 564, 579, 591, 734
FspBI	CTAG	2 cut(s)	678, 749
GluI	GCNGC	7 cut(s)	154, 204, 323, 564, 579, 591, 734
HaeIII	GGCC	4 cut(s)	101, 636, 698, 727
Hin1II	CATG	2 cut(s)	201, 782
HinfI	GANTC	4 cut(s)	419, 627, 640, 665
HphI	GGTGA	3 cut(s)	85, 94, 610
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	6 cut(s)	62, 90, 161, 540, 678, 749
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	187, 654
HpyCH4III	ACNGT	3 cut(s)	146, 244, 337
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	7 cut(s)	153, 203, 389, 590, 684, 715, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 587, 596, 733, 772
HpyF3I	CTNAG	3 cut(s)	119, 273, 737
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	2 cut(s)	201, 782
Kzo9I	GATC	5 cut(s)	56, 163, 220, 340, 406
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	7 cut(s)	165, 215, 334, 565, 575, 602, 745
LweI	GCATC	6 cut(s)	376, 462, 517, 577, 612, 671
MaeI	CTAG	2 cut(s)	678, 749
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	6 cut(s)	82, 262, 283, 293, 460, 520
MalI	GATC	5 cut(s)	58, 165, 222, 342, 408
MboI	GATC	5 cut(s)	56, 163, 220, 340, 406
MboII	GAAGA	2 cut(s)	269, 414
MflI	RGATCY	2 cut(s)	56, 406
MhlI	GDGCHC	2 cut(s)	479, 700
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	1 cut(s)	468
MluI	ACGCGT	1 cut(s)	656
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	649, 659
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	38, 64, 247, 409, 498, 545, 685
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	4 cut(s)	45, 237, 356, 393
MslI	CAYNNNNRTG	1 cut(s)	458
Msp20I	TGGCCA	1 cut(s)	636
MspA1I	CMGCKG	3 cut(s)	179, 206, 325
MspCI	CTTAAG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	658
MwoI	GCNNNNNNNGC	5 cut(s)	203, 587, 596, 733, 772
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	5 cut(s)	56, 163, 220, 340, 406
NlaIII	CATG	2 cut(s)	201, 782
NlaIV	GGNNCC	2 cut(s)	697, 698
NmuCI	GTSAC	6 cut(s)	82, 262, 283, 293, 460, 520
NspI	RCATGY	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	419, 627
PkrI	GCNGC	7 cut(s)	155, 205, 324, 565, 580, 592, 735
PleI	GAGTC	2 cut(s)	648, 659
PpsI	GAGTC	2 cut(s)	648, 659
Psp124BI	GAGCTC	1 cut(s)	479
Psp1406I	AACGTT	1 cut(s)	787
PspN4I	GGNNCC	2 cut(s)	697, 698
PspOMI	GGGCCC	1 cut(s)	696
PspPI	GGNCC	3 cut(s)	100, 696, 697
PstNI	CAGNNNCTG	2 cut(s)	95, 596
PsuI	RGATCY	2 cut(s)	56, 406
PvuII	CAGCTG	3 cut(s)	179, 206, 325
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	4 cut(s)	45, 237, 356, 393
SatI	GCNGC	7 cut(s)	154, 204, 323, 564, 579, 591, 734
Sau3AI	GATC	5 cut(s)	56, 163, 220, 340, 406
Sau96I	GGNCC	3 cut(s)	100, 696, 697
SchI	GAGTC	2 cut(s)	649, 659
SduI	GDGCHC	2 cut(s)	479, 700
SfaNI	GCATC	6 cut(s)	376, 462, 517, 577, 612, 671
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	44, 60
SmoI	CTYRAG	2 cut(s)	44, 60
Sse9I	AATT	1 cut(s)	468
SspMI	CTAG	2 cut(s)	678, 749
SstI	GAGCTC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	146, 244, 337
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	3 cut(s)	19, 339, 630
TasI	AATT	1 cut(s)	468
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	2 cut(s)	419, 627
Tru1I	TTAA	4 cut(s)	45, 237, 356, 393
Tru9I	TTAA	4 cut(s)	45, 237, 356, 393
TscAI	CASTG	2 cut(s)	281, 628
TseFI	GTSAC	6 cut(s)	82, 262, 283, 293, 460, 520
TseI	GCWGC	7 cut(s)	153, 203, 322, 563, 578, 590, 733
Tsp45I	GTSAC	6 cut(s)	82, 262, 283, 293, 460, 520
TspDTI	ATGAA	4 cut(s)	393, 472, 476, 767
TspRI	CASTG	2 cut(s)	281, 628
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	468
XbaI	TCTAGA	2 cut(s)	677, 748
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	2 cut(s)	678, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.