Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

36048370 .. 36050928

Gene Structure 2559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGAAACACAATTGGAGGAAAAAGCAGGAAAGCAAAGGTGATGAAGATAAGTGGAGAAACGTTCAAGGTAAAGACTCCCATACGAGCTGGGGATCTAGTGAAGGAGCACCCAGGTCATATGCTATTGAATTCTGAAGCTGTTAAACATTTTGGTATGAGAGCTAAGCCATTAGAAGCGCAACAAGAGCTCAAGCCCAGGAGTATATATTTTCTGGTAGAATTGCCCAATTTTGATTATATGAATTCGGAAGAAGAAGCAGGAAGAAGAAGTAATAGCAGGGTGGCGAGAAGGGTGAGATCGTCGGCCAATATTCAAGTGAGCGCCAAGGAGAGGCTCGAGTGCTTGATGCTGTCTCGACGCTCTGCTTCCGACCTTACGAGTTTTGTGAGAGCAGCACCACCATCTTTAGGAGGAGCAGGAGCTCCGGTGAGGATGAAGATGAGGCTGCCGAGGGCGCAGGTGGTCAAATTGATGGAGGAGAGTAAGGATGAGATTGAAGTCGCCGACAAAATCATTCAGCTCTATATGGCCAATGCCGGCACCGTCGGCGATAACAGCAACACGGACAAAAACTTCACTTTCAAGGCGCGTCAGAAGCGAGTGAGTTTTGTCCCCGAGAAGAAAGGAGAAATTCAATTAGATGTAGCTCCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

10.03

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 162	1.4e-20	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	1 cut(s)	592
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	306, 531
AcsI	RAATTY	3 cut(s)	130, 244, 633
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	333, 410
AgsI	TTSAA	6 cut(s)	67, 130, 317, 500, 586, 638
AjnI	CCWGG	2 cut(s)	112, 197
AluBI	AGCT	7 cut(s)	89, 140, 164, 190, 425, 523, 650
AluI	AGCT	7 cut(s)	89, 140, 164, 190, 425, 523, 650
Alw21I	GWGCWC	3 cut(s)	111, 192, 427
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	2 cut(s)	338, 617
AoxI	GGCC	2 cut(s)	306, 531
ApeKI	GCWGC	2 cut(s)	395, 448
ApoI	RAATTY	3 cut(s)	130, 244, 633
AspLEI	GCGC	4 cut(s)	181, 326, 460, 592
AsuHPI	GGTGA	3 cut(s)	52, 307, 442
AvaI	CYCGRG	2 cut(s)	338, 617
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	2 cut(s)	192, 427
Bbv12I	GWGCWC	3 cut(s)	111, 192, 427
BbvI	GCAGC	2 cut(s)	407, 435
BccI	CCATC	2 cut(s)	412, 469
BciT130I	CCWGG	2 cut(s)	114, 199
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	396, 449
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	397, 450
Bme1390I	CCNGG	2 cut(s)	114, 199
BmeT110I	CYCGRG	2 cut(s)	338, 617
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	2 cut(s)	114, 199
BmsI	GCATC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	4 cut(s)	112, 197, 327, 452
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 410
Bse118I	RCCGGY	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	114, 199
BseDI	CCNNGG	4 cut(s)	112, 197, 327, 452
BseGI	GGATG	2 cut(s)	441, 496
BseLI	CCNNNNNNNGG	2 cut(s)	333, 410
BseRI	GAGGAG	3 cut(s)	429, 494, 642
BseXI	GCAGC	2 cut(s)	407, 435
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	308, 533
BshNI	GGYRCC	1 cut(s)	542
BsiHKAI	GWGCWC	3 cut(s)	111, 192, 427
BsiHKCI	CYCGRG	2 cut(s)	338, 617
BsiSI	CCGG	2 cut(s)	428, 540
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	333, 410
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	308, 533
BsoBI	CYCGRG	2 cut(s)	338, 617
Bsp1286I	GDGCHC	3 cut(s)	111, 192, 427
Bsp143I	GATC	2 cut(s)	94, 299
Bsp1720I	GCTNAGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	308, 533
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	4 cut(s)	112, 197, 327, 452
BssMI	GATC	2 cut(s)	94, 299
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	114, 199
Bst4CI	ACNGT	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	441, 496
BstFNI	CGCG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	4 cut(s)	181, 326, 460, 592
BstKTI	GATC	2 cut(s)	97, 302
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	94, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 457, 549, 558, 598
BstNI	CCWGG	2 cut(s)	114, 199
BstSCI	CCNGG	2 cut(s)	112, 197
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	407, 435
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	308, 533
BtsCI	GGATG	2 cut(s)	441, 496
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	4 cut(s)	181, 326, 460, 592
Cfr10I	RCCGGY	1 cut(s)	539
CseI	GACGC	2 cut(s)	369, 581
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	96, 301
DpnII	GATC	2 cut(s)	94, 299
EaeI	YGGCCR	2 cut(s)	306, 531
Ecl136II	GAGCTC	2 cut(s)	190, 425
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	2 cut(s)	192, 427
Eco53kI	GAGCTC	2 cut(s)	190, 425
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	2 cut(s)	338, 617
EcoICRI	GAGCTC	2 cut(s)	190, 425
EcoRI	GAATTC	2 cut(s)	130, 244
EcoRII	CCWGG	2 cut(s)	112, 197
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	192, 427
ErhI	CCWWGG	1 cut(s)	327
FaqI	GGGAC	1 cut(s)	599
FauNDI	CATATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	396, 449
FokI	GGATG	2 cut(s)	448, 503
FriOI	GRGCYC	2 cut(s)	192, 427
Fsp4HI	GCNGC	2 cut(s)	396, 449
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	4 cut(s)	180, 325, 459, 591
GluI	GCNGC	2 cut(s)	396, 449
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	308, 533
HapII	CCGG	2 cut(s)	428, 540
HgaI	GACGC	2 cut(s)	369, 581
HhaI	GCGC	4 cut(s)	181, 326, 460, 592
Hin6I	GCGC	4 cut(s)	179, 324, 458, 590
HinP1I	GCGC	4 cut(s)	179, 324, 458, 590
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	428, 540
HphI	GGTGA	3 cut(s)	52, 307, 442
Hpy188I	TCNGA	4 cut(s)	136, 250, 373, 597
Hpy188III	TCNNGA	1 cut(s)	357
Hpy99I	CGWCG	3 cut(s)	307, 363, 551
HpyAV	CCTTC	2 cut(s)	97, 285
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 457, 549, 558, 598
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	62
HspAI	GCGC	4 cut(s)	179, 324, 458, 590
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	94, 299
LmnI	GCTCC	5 cut(s)	106, 416, 422, 430, 655
Lsp1109I	GCAGC	2 cut(s)	407, 435
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	62
MalI	GATC	2 cut(s)	96, 301
MboI	GATC	2 cut(s)	94, 299
MboII	GAAGA	7 cut(s)	58, 263, 266, 276, 279, 451, 634
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	3 cut(s)	111, 192, 427
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	8 cut(s)	12, 130, 221, 229, 244, 470, 633, 638
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	11, 327, 407, 426, 438, 447, 472
Mox20I	TGGCCA	1 cut(s)	533
MroNI	GCCGGC	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	2 cut(s)	428, 540
MspR9I	CCNGG	2 cut(s)	114, 199
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	114, 199
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	5 cut(s)	187, 457, 549, 558, 598
NaeI	GCCGGC	1 cut(s)	541
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	2 cut(s)	94, 299
NgoMIV	GCCGGC	1 cut(s)	539
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	397, 450
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp124BI	GAGCTC	2 cut(s)	192, 427
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	112, 197
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	112, 197
PspN4I	GGNNCC	1 cut(s)	544
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	94
SacI	GAGCTC	2 cut(s)	192, 427
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	396, 449
Sau3AI	GATC	2 cut(s)	94, 299
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	114, 199
SduI	GDGCHC	3 cut(s)	111, 192, 427
SfaNI	GCATC	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	191, 338
SmoI	CTYRAG	2 cut(s)	191, 338
Sse9I	AATT	8 cut(s)	12, 130, 221, 229, 244, 470, 633, 638
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	2 cut(s)	192, 427
StyD4I	CCNGG	2 cut(s)	112, 197
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	339, 358
TasI	AATT	8 cut(s)	12, 130, 221, 229, 244, 470, 633, 638
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	395, 448
TspDTI	ATGAA	3 cut(s)	59, 257, 452
TspGWI	ACGGA	1 cut(s)	581
XapI	RAATTY	3 cut(s)	130, 244, 633
XhoI	CTCGAG	1 cut(s)	338
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.