Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

9245076 .. 9248346

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAACAAGACATTGATCGAGCTTTCCTCAAAGACAGAAACGTAGGAGCTGCGGTTGTGACTGAAAAGGATGGAAGAATTGCGCTTGAAAGATTACAAGTGCTTTGTCAGAAGCTTAAGGAGTTGAGATCTCAAGAATATGAGGTGATATTGGTGACATCAGGAGCTGCGGCCCTTGGTCGTCAAGTGCTGAGAGACAGGATATCAGTTCACAAAAGCAGCTCTGCTGATCTCCAAAAGCCAGCTGATCTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGATCGTGTTTAGTGAGGTTGTGACACAAGCTCAGTGTATTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAATGAAACGGTCGAACACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATATGAGGGGAGGCCTTTAGTTGAAAATGCAAGAGAGATGGCCATTGCAGCTAAGGAAAGTTCTAGACGGCTTCAGGCTATGACTTCAGAAGAAAGGAAAAGAATTCTACTGGATATAGCTGATGCGCTTGAAGGAAATTCACATATAATCTATGTAGAAAATGAAGCTGATGTATGTGAAGCAGAACATGCTGGATATGAAAAATCCTTGATATCTCGGCTAGCTCTAAACCCTGGGAAGGCAAGTGAAATAAGTTTGGCTATGTTAGCTAGAGCTGATTGTATCACACGTCTTGCAAACAACATTCGTGTACTTGCAAACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACTCAGCCTGCAGATGGCCTCATCTTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGGTTATATTTGAGTCTCATCCTGATGCACTAATACAGATAGCTACCTTGGCAATCCGAAATGGGAATGGGCTTCTCTTGAAGGATGGGAAGGAGGCTAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

330

Amino Acids

36.38

Weight (kDa)

5.73

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	16 - 157	4.6e-11	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 170, 814
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	2 cut(s)	513, 811
AcsI	RAATTY	2 cut(s)	576, 610
AcuI	CTGAAG	2 cut(s)	530, 543
AfaI	GTAC	2 cut(s)	460, 786
AfiI	CCNNNNNNNGG	2 cut(s)	712, 842
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	7 cut(s)	89, 380, 439, 497, 605, 822, 967
AjiI	CACGTC	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
Alw26I	GTCTC	2 cut(s)	189, 906
AlwI	GGATC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	5 cut(s)	171, 485, 513, 811, 844
ApeKI	GCWGC	6 cut(s)	50, 167, 219, 269, 385, 521
ApoI	RAATTY	2 cut(s)	576, 610
AspLEI	GCGC	2 cut(s)	85, 601
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	157, 166
AsuNHI	GCTAGC	1 cut(s)	694
BalI	TGGCCA	1 cut(s)	515
BbvI	GCAGC	6 cut(s)	37, 154, 231, 281, 397, 533
BccI	CCATC	6 cut(s)	65, 248, 286, 505, 836, 965
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	189, 906
BfaI	CTAG	3 cut(s)	537, 695, 744
BfmI	CTRYAG	1 cut(s)	837
BfrI	CTTAAG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	8 cut(s)	51, 168, 171, 220, 270, 386, 522, 814
BlsI	GCNGC	8 cut(s)	52, 169, 172, 221, 271, 387, 523, 815
Bme1390I	CCNGG	1 cut(s)	708
BmgBI	CACGTC	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	708
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	3 cut(s)	439, 586, 901
BmtI	GCTAGC	1 cut(s)	698
BmuI	ACTGGG	1 cut(s)	884
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	175, 706, 707, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 842
Bse1I	ACTGG	2 cut(s)	588, 879
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	4 cut(s)	175, 706, 707, 933
BseGI	GGATG	4 cut(s)	76, 259, 904, 976
BseLI	CCNNNNNNNGG	2 cut(s)	712, 842
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	182, 350, 845
BseNI	ACTGG	2 cut(s)	588, 879
BseXI	GCAGC	6 cut(s)	37, 154, 231, 281, 397, 533
BsgI	GTGCAG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	5 cut(s)	173, 487, 515, 813, 846
BsiEI	CGRYCG	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	712, 842
BsmAI	GTCTC	2 cut(s)	189, 906
BsnI	GGCC	5 cut(s)	173, 487, 515, 813, 846
Bsp143I	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
BspACI	CCGC	3 cut(s)	53, 170, 814
BspANI	GGCC	5 cut(s)	173, 487, 515, 813, 846
BspCNI	CTCAG	3 cut(s)	183, 349, 844
BspMAI	CTGCAG	1 cut(s)	841
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	1 cut(s)	797
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	588, 879
BssECI	CCNNGG	4 cut(s)	175, 706, 707, 933
BssMI	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
BssT1I	CCWWGG	2 cut(s)	175, 933
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	400
BstAFI	CTTAAG	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	243, 696, 837
BstDEI	CTNAG	6 cut(s)	191, 336, 525, 831, 853, 984
BstF5I	GGATG	4 cut(s)	76, 259, 904, 976
BstHHI	GCGC	2 cut(s)	85, 601
BstKTI	GATC	7 cut(s)	19, 131, 232, 250, 289, 309, 805
BstMAI	GTCTC	2 cut(s)	189, 906
BstMBI	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	5 cut(s)	269, 521, 662, 740, 935
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	2 cut(s)	267, 665
BstSCI	CCNGG	1 cut(s)	706
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	6 cut(s)	37, 154, 231, 281, 397, 533
BstX2I	RGATCY	2 cut(s)	128, 802
BstYI	RGATCY	2 cut(s)	128, 802
BsuRI	GGCC	5 cut(s)	173, 487, 515, 813, 846
BtrI	CACGTC	1 cut(s)	764
BtsCI	GGATG	4 cut(s)	76, 259, 904, 976
BtsIMutI	CAGTG	2 cut(s)	344, 872
Cac8I	GCNNGC	3 cut(s)	243, 696, 837
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	85, 601
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	459, 785
CviAII	CATG	4 cut(s)	264, 662, 796, 867
CviQI	GTAC	2 cut(s)	459, 785
DdeI	CTNAG	6 cut(s)	191, 336, 525, 831, 853, 984
DpnI	GATC	7 cut(s)	18, 130, 231, 249, 288, 308, 804
DpnII	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	513, 811
Eco130I	CCWWGG	2 cut(s)	175, 933
Eco147I	AGGCCT	1 cut(s)	487
Eco32I	GATATC	2 cut(s)	204, 687
Eco57I	CTGAAG	2 cut(s)	530, 543
EcoRI	GAATTC	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	706
EcoRV	GATATC	2 cut(s)	204, 687
EcoT14I	CCWWGG	2 cut(s)	175, 933
ErhI	CCWWGG	2 cut(s)	175, 933
FaeI	CATG	4 cut(s)	267, 665, 799, 870
FatI	CATG	4 cut(s)	263, 661, 795, 866
Fnu4HI	GCNGC	8 cut(s)	51, 168, 171, 220, 270, 386, 522, 814
FokI	GGATG	4 cut(s)	83, 266, 891, 983
Fsp4HI	GCNGC	8 cut(s)	51, 168, 171, 220, 270, 386, 522, 814
FspBI	CTAG	3 cut(s)	537, 695, 744
GlaI	GCGC	2 cut(s)	84, 600
GluI	GCNGC	8 cut(s)	51, 168, 171, 220, 270, 386, 522, 814
HaeIII	GGCC	5 cut(s)	173, 487, 515, 813, 846
HhaI	GCGC	2 cut(s)	85, 601
Hin1II	CATG	4 cut(s)	267, 665, 799, 870
Hin6I	GCGC	2 cut(s)	83, 599
HinP1I	GCGC	2 cut(s)	83, 599
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	899
HphI	GGTGA	2 cut(s)	157, 166
Hpy166II	GTNNAC	3 cut(s)	211, 785, 872
Hpy188I	TCNGA	4 cut(s)	111, 291, 562, 944
Hpy188III	TCNNGA	7 cut(s)	134, 162, 251, 537, 822, 908, 964
Hpy8I	GTNNAC	3 cut(s)	211, 785, 872
HpyAV	CCTTC	5 cut(s)	253, 599, 706, 961, 970
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	42, 763
HpyCH4V	TGCA	8 cut(s)	269, 452, 503, 521, 770, 791, 839, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	269, 521, 662, 740, 935
HpyF3I	CTNAG	6 cut(s)	191, 336, 525, 831, 853, 984
HpySE526I	ACGT	2 cut(s)	42, 763
Hsp92II	CATG	4 cut(s)	267, 665, 799, 870
HspAI	GCGC	2 cut(s)	83, 599
Kzo9I	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
LmnI	GCTCC	2 cut(s)	47, 164
Lsp1109I	GCAGC	6 cut(s)	37, 154, 231, 281, 397, 533
LweI	GCATC	3 cut(s)	439, 586, 901
MaeI	CTAG	3 cut(s)	537, 695, 744
MaeII	ACGT	2 cut(s)	42, 763
MaeIII	GTNAC	5 cut(s)	58, 154, 325, 346, 356
MalI	GATC	7 cut(s)	18, 130, 231, 249, 288, 308, 804
MboI	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
MboII	GAAGA	3 cut(s)	87, 575, 812
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	2 cut(s)	128, 802
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	4 cut(s)	78, 576, 610, 807
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	38, 136, 313, 472, 477, 857, 973
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	3 cut(s)	117, 303, 419
MslI	CAYNNNNRTG	1 cut(s)	909
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	3 cut(s)	245, 272, 388
MspCI	CTTAAG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	708
MunI	CAATTG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	5 cut(s)	269, 521, 662, 740, 935
NdeII	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	4 cut(s)	267, 665, 799, 870
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	5 cut(s)	58, 154, 325, 346, 356
NspI	RCATGY	2 cut(s)	267, 665
PasI	CCCWGGG	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	487
PkrI	GCNGC	8 cut(s)	52, 169, 172, 221, 271, 387, 523, 815
PleI	GAGTC	1 cut(s)	907
PpsI	GAGTC	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	128, 802
PvuII	CAGCTG	3 cut(s)	245, 272, 388
RsaI	GTAC	2 cut(s)	460, 786
RsaNI	GTAC	2 cut(s)	459, 785
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	3 cut(s)	117, 303, 419
SatI	GCNGC	8 cut(s)	51, 168, 171, 220, 270, 386, 522, 814
Sau3AI	GATC	7 cut(s)	16, 128, 229, 247, 286, 306, 802
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	1 cut(s)	708
SfaNI	GCATC	3 cut(s)	439, 586, 901
SfcI	CTRYAG	1 cut(s)	837
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	2 cut(s)	116, 132
SmoI	CTYRAG	2 cut(s)	116, 132
Sse9I	AATT	4 cut(s)	78, 576, 610, 807
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	3 cut(s)	53, 170, 814
SspMI	CTAG	3 cut(s)	537, 695, 744
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	2 cut(s)	175, 933
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	2 cut(s)	45, 766
TaqI	TCGA	2 cut(s)	19, 402
TasI	AATT	4 cut(s)	78, 576, 610, 807
TatI	WGTACW	1 cut(s)	784
TauI	GCSGC	2 cut(s)	173, 816
Tru1I	TTAA	3 cut(s)	117, 303, 419
Tru9I	TTAA	3 cut(s)	117, 303, 419
TscAI	CASTG	2 cut(s)	344, 879
TseFI	GTSAC	5 cut(s)	58, 154, 325, 346, 356
TseI	GCWGC	6 cut(s)	50, 167, 219, 269, 385, 521
Tsp45I	GTSAC	5 cut(s)	58, 154, 325, 346, 356
TspDTI	ATGAA	4 cut(s)	408, 456, 651, 687
TspRI	CASTG	2 cut(s)	344, 879
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	576, 610
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	2 cut(s)	267, 665
XspI	CTAG	3 cut(s)	537, 695, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.