Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011394.1

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

17646 .. 20426

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011394.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggaacaagacattgttcgagctttcctcaaagacagaaacgtaattaagcgcctagttatcaaggtaggaactgcggttgtgaatgaaaaggatggaagaattgcgcttgaaagattacaagtgctttgtgagaagcttaaggagttgagatctcaagaatatgaggtgatgttggtgacatcaggagctgtggcccttggtcgtcaagtgctgagagacaggatatcagttcacaacagtagctctgctgatctccaaaagccagctgaactggatgggaaggcatgtgcagctgttggacagcctgatctggtggctctctttaagaccgtgtttagtgaggaagatgtgacagaagctcagtgtcttgtcacagaaagtgactttaggggtaaagattttcaaaggcagctgaaagaaacgatgcaaatacagggggcccctttagttgaaaatgcaagagagatggcagttgcagctaaggaaagttctagacggcttcaggttatgacttcggaagaaaggaaaagaattctactggatatagctgatgcgcttgaaggaaattcacatataatccatgtagaaaatgaagctgatgtatgtgcagcagaacatgctggacatgaaaaatccttgatatctcggctagctctaagccctgggaagatcacacgtcttgcaaacgacattagtgtacttgcaaacatggaagatccaattggccgcctttcaagaaaaacgcagcttgcagatggcctcatcttagagaaaacatcatgtccactgggcgttctcttggttatatttgagtctcatcctgatgcactaatacaggtaatttactggattatgaacctggataatcttgcatcagacacctttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

297

Amino Acids

32.91

Weight (kDa)

5.42

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 730
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	534, 568
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	702
AflII	CTTAAG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	5 cut(s)	113, 407, 455, 563, 738
AjiI	CACGTC	1 cut(s)	680
AjnI	CCWGG	2 cut(s)	664, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
Alw26I	GTCTC	2 cut(s)	213, 822
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	4 cut(s)	195, 441, 727, 760
ApaI	GGGCCC	1 cut(s)	445
ApeKI	GCWGC	5 cut(s)	293, 412, 479, 611, 748
ApoI	RAATTY	2 cut(s)	534, 568
AspLEI	GCGC	3 cut(s)	54, 109, 559
AspS9I	GGNCC	3 cut(s)	196, 441, 442
AsuHPI	GGTGA	2 cut(s)	181, 190
AsuNHI	GCTAGC	1 cut(s)	652
BaeGI	GKGCMC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	445
BbvI	GCAGC	5 cut(s)	305, 424, 491, 623, 760
BccI	CCATC	4 cut(s)	89, 272, 463, 752
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	2 cut(s)	666, 863
BcoDI	GTCTC	2 cut(s)	213, 822
BfaI	CTAG	3 cut(s)	56, 495, 653
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	6 cut(s)	294, 413, 480, 612, 730, 749
BlsI	GCNGC	6 cut(s)	295, 414, 481, 613, 731, 750
Bme1390I	CCNGG	2 cut(s)	666, 863
BmgBI	CACGTC	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	196, 441, 442
BmiI	GGNNCC	3 cut(s)	442, 443, 444
BmrFI	CCNGG	2 cut(s)	666, 863
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	4 cut(s)	417, 544, 817, 884
BmtI	GCTAGC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	800
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	199, 664, 665
Bse1I	ACTGG	4 cut(s)	279, 546, 795, 854
BseBI	CCWGG	2 cut(s)	666, 863
BseDI	CCNNGG	3 cut(s)	199, 664, 665
BseGI	GGATG	3 cut(s)	100, 283, 820
BseMII	CTCAG	2 cut(s)	206, 377
BseNI	ACTGG	4 cut(s)	279, 546, 795, 854
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	5 cut(s)	305, 424, 491, 623, 760
BsgI	GTGCAG	2 cut(s)	312, 630
BshFI	GGCC	4 cut(s)	197, 443, 729, 762
BsmAI	GTCTC	2 cut(s)	213, 822
BsnI	GGCC	4 cut(s)	197, 443, 729, 762
Bsp120I	GGGCCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	152, 253, 310, 672, 718
BspACI	CCGC	2 cut(s)	77, 730
BspANI	GGCC	4 cut(s)	197, 443, 729, 762
BspCNI	CTCAG	2 cut(s)	207, 376
BspLI	GGNNCC	3 cut(s)	442, 443, 444
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	713
BspTI	CTTAAG	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	279, 546, 795, 854
BssECI	CCNNGG	3 cut(s)	199, 664, 665
BssMI	GATC	5 cut(s)	152, 253, 310, 672, 718
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	666, 863
Bst4CI	ACNGT	2 cut(s)	242, 334
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	267, 654, 753
BstDEI	CTNAG	5 cut(s)	215, 363, 483, 659, 769
BstF5I	GGATG	3 cut(s)	100, 283, 820
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	54, 109, 559
BstKTI	GATC	5 cut(s)	155, 256, 313, 675, 721
BstMAI	GTCTC	2 cut(s)	213, 822
BstMBI	GATC	5 cut(s)	152, 253, 310, 672, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 479, 620
BstNI	CCWGG	2 cut(s)	666, 863
BstNSI	RCATGY	2 cut(s)	291, 623
BstSCI	CCNGG	2 cut(s)	664, 861
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	5 cut(s)	305, 424, 491, 623, 760
BstX2I	RGATCY	2 cut(s)	152, 718
BstYI	RGATCY	2 cut(s)	152, 718
BsuRI	GGCC	4 cut(s)	197, 443, 729, 762
BtrI	CACGTC	1 cut(s)	680
BtsCI	GGATG	3 cut(s)	100, 283, 820
BtsIMutI	CAGTG	2 cut(s)	371, 788
Cac8I	GCNNGC	3 cut(s)	267, 654, 753
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	3 cut(s)	54, 109, 559
Cfr13I	GGNCC	3 cut(s)	196, 441, 442
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	6 cut(s)	288, 584, 620, 629, 712, 783
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	5 cut(s)	215, 363, 483, 659, 769
DpnI	GATC	5 cut(s)	154, 255, 312, 674, 720
DpnII	GATC	5 cut(s)	152, 253, 310, 672, 718
EaeI	YGGCCR	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	445
Eco32I	GATATC	2 cut(s)	228, 645
Eco57I	CTGAAG	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	441, 442
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	664, 861
EcoRV	GATATC	2 cut(s)	228, 645
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	6 cut(s)	291, 587, 623, 632, 715, 786
FatI	CATG	6 cut(s)	287, 583, 619, 628, 711, 782
Fnu4HI	GCNGC	6 cut(s)	294, 413, 480, 612, 730, 749
FokI	GGATG	3 cut(s)	107, 290, 807
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	6 cut(s)	294, 413, 480, 612, 730, 749
FspBI	CTAG	3 cut(s)	56, 495, 653
GlaI	GCGC	3 cut(s)	53, 108, 558
GluI	GCNGC	6 cut(s)	294, 413, 480, 612, 730, 749
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	197, 443, 729, 762
HhaI	GCGC	3 cut(s)	54, 109, 559
Hin1II	CATG	6 cut(s)	291, 587, 623, 632, 715, 786
Hin6I	GCGC	3 cut(s)	52, 107, 557
HinP1I	GCGC	3 cut(s)	52, 107, 557
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	815
HphI	GGTGA	2 cut(s)	181, 190
Hpy166II	GTNNAC	3 cut(s)	235, 701, 788
Hpy188I	TCNGA	2 cut(s)	520, 880
Hpy188III	TCNNGA	5 cut(s)	158, 186, 495, 738, 824
Hpy8I	GTNNAC	3 cut(s)	235, 701, 788
HpyAV	CCTTC	2 cut(s)	277, 557
HpyCH4III	ACNGT	2 cut(s)	242, 334
HpyCH4IV	ACGT	2 cut(s)	42, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 479, 620
HpyF3I	CTNAG	5 cut(s)	215, 363, 483, 659, 769
HpySE526I	ACGT	2 cut(s)	42, 679
Hsp92II	CATG	6 cut(s)	291, 587, 623, 632, 715, 786
HspAI	GCGC	3 cut(s)	52, 107, 557
Kzo9I	GATC	5 cut(s)	152, 253, 310, 672, 718
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	5 cut(s)	305, 424, 491, 623, 760
LweI	GCATC	4 cut(s)	417, 544, 817, 884
MaeI	CTAG	3 cut(s)	56, 495, 653
MaeII	ACGT	2 cut(s)	42, 679
MaeIII	GTNAC	4 cut(s)	178, 352, 373, 383
MalI	GATC	5 cut(s)	154, 255, 312, 674, 720
MboI	GATC	5 cut(s)	152, 253, 310, 672, 718
MboII	GAAGA	5 cut(s)	111, 359, 533, 682, 728
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	152, 718
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	6 cut(s)	45, 102, 534, 568, 723, 843
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	38, 160, 337, 773
MseI	TTAA	3 cut(s)	48, 141, 327
MslI	CAYNNNNRTG	1 cut(s)	825
MspA1I	CMGCKG	3 cut(s)	269, 296, 415
MspCI	CTTAAG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	666, 863
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	2 cut(s)	666, 863
MwoI	GCNNNNNNNGC	3 cut(s)	293, 479, 620
NdeII	GATC	5 cut(s)	152, 253, 310, 672, 718
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	6 cut(s)	291, 587, 623, 632, 715, 786
NlaIV	GGNNCC	3 cut(s)	442, 443, 444
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	4 cut(s)	178, 352, 373, 383
NspI	RCATGY	2 cut(s)	291, 623
PasI	CCCWGGG	1 cut(s)	665
PkrI	GCNGC	6 cut(s)	295, 414, 481, 613, 731, 750
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
Psp6I	CCWGG	2 cut(s)	664, 861
PspGI	CCWGG	2 cut(s)	664, 861
PspN4I	GGNNCC	3 cut(s)	442, 443, 444
PspOMI	GGGCCC	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	196, 441, 442
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	152, 718
PvuII	CAGCTG	3 cut(s)	269, 296, 415
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	48, 141, 327
SatI	GCNGC	6 cut(s)	294, 413, 480, 612, 730, 749
Sau3AI	GATC	5 cut(s)	152, 253, 310, 672, 718
Sau96I	GGNCC	3 cut(s)	196, 441, 442
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	666, 863
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	4 cut(s)	417, 544, 817, 884
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	140, 156
SmoI	CTYRAG	2 cut(s)	140, 156
Sse9I	AATT	6 cut(s)	45, 102, 534, 568, 723, 843
SsiI	CCGC	2 cut(s)	77, 730
SspMI	CTAG	3 cut(s)	56, 495, 653
StyD4I	CCNGG	2 cut(s)	664, 861
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	242, 334
TaiI	ACGT	2 cut(s)	45, 682
TaqI	TCGA	1 cut(s)	19
TasI	AATT	6 cut(s)	45, 102, 534, 568, 723, 843
TatI	WGTACW	1 cut(s)	700
TauI	GCSGC	1 cut(s)	732
Tru1I	TTAA	3 cut(s)	48, 141, 327
Tru9I	TTAA	3 cut(s)	48, 141, 327
TscAI	CASTG	2 cut(s)	371, 795
TseFI	GTSAC	4 cut(s)	178, 352, 373, 383
TseI	GCWGC	5 cut(s)	293, 412, 479, 611, 748
Tsp45I	GTSAC	4 cut(s)	178, 352, 373, 383
TspDTI	ATGAA	4 cut(s)	102, 609, 645, 872
TspRI	CASTG	2 cut(s)	371, 795
Vha464I	CTTAAG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	534, 568
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	2 cut(s)	291, 623
XspI	CTAG	3 cut(s)	56, 495, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.