Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Reverse (-)

70900111 .. 70901095

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCTTCGTCCCAGACATAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGTCCATGTTTAGTGAGGATGTGACACAAGCTCAGTGTCTTCTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGATTCTTCTGGTATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAAGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

112

Amino Acids

11.97

Weight (kDa)

4.42

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 111	6e-09	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	7 cut(s)	54, 77, 104, 167, 254, 263, 271
AluI	AGCT	7 cut(s)	54, 77, 104, 167, 254, 263, 271
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	3 cut(s)	3, 48, 323
ApeKI	GCWGC	2 cut(s)	101, 251
AspS9I	GGNCC	2 cut(s)	48, 323
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	113, 263
BccI	CCATC	2 cut(s)	80, 118
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	316
BisI	GCNGC	2 cut(s)	102, 252
BlsI	GCNGC	2 cut(s)	103, 253
BmgT120I	GGNCC	2 cut(s)	48, 323
BpiI	GAAGAC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	91, 160
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	113, 263
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	5, 50, 325
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	5, 50, 325
Bso31I	GGTCTC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	61, 118, 280
BspANI	GGCC	3 cut(s)	5, 50, 325
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	61, 118, 280
Bst4CI	ACNGT	2 cut(s)	245, 320
BstC8I	GCNNGC	2 cut(s)	52, 75
BstDEI	CTNAG	2 cut(s)	168, 264
BstF5I	GGATG	2 cut(s)	91, 160
BstKTI	GATC	3 cut(s)	64, 121, 283
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	61, 118, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 101, 260
BstNSI	RCATGY	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	113, 263
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	3 cut(s)	5, 50, 325
BtsCI	GGATG	2 cut(s)	91, 160
BtsIMutI	CAGTG	2 cut(s)	176, 325
Cac8I	GCNNGC	2 cut(s)	52, 75
Cfr13I	GGNCC	2 cut(s)	48, 323
CviAII	CATG	2 cut(s)	96, 142
DdeI	CTNAG	2 cut(s)	168, 264
DpnI	GATC	3 cut(s)	63, 120, 282
DpnII	GATC	3 cut(s)	61, 118, 280
Eco31I	GGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	99, 145
FaiI	YATR	5 cut(s)	20, 97, 143, 257, 296
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	95, 141
Fnu4HI	GCNGC	2 cut(s)	102, 252
FokI	GGATG	2 cut(s)	98, 167
Fsp4HI	GCNGC	2 cut(s)	102, 252
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	102, 252
HaeIII	GGCC	3 cut(s)	5, 50, 325
Hin1II	CATG	2 cut(s)	99, 145
HinfI	GANTC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	16, 85, 302
HpyCH4III	ACNGT	2 cut(s)	245, 320
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 101, 260
HpyF3I	CTNAG	2 cut(s)	168, 264
Hsp92II	CATG	2 cut(s)	99, 145
Kzo9I	GATC	3 cut(s)	61, 118, 280
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	6 cut(s)	27, 64, 68, 87, 129, 209
Lsp1109I	GCAGC	2 cut(s)	113, 263
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	2 cut(s)	157, 188
MalI	GATC	3 cut(s)	63, 120, 282
MboI	GATC	3 cut(s)	61, 118, 280
MboII	GAAGA	4 cut(s)	21, 167, 212, 275
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	145, 336
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	77, 104
MwoI	GCNNNNNNNGC	3 cut(s)	56, 101, 260
NdeII	GATC	3 cut(s)	61, 118, 280
NlaIII	CATG	2 cut(s)	99, 145
NmuCI	GTSAC	2 cut(s)	157, 188
NspI	RCATGY	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	103, 253
PspPI	GGNCC	2 cut(s)	48, 323
PvuII	CAGCTG	2 cut(s)	77, 104
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	102, 252
Sau3AI	GATC	3 cut(s)	61, 118, 280
Sau96I	GGNCC	2 cut(s)	48, 323
SetI	ASST	8 cut(s)	56, 79, 106, 169, 256, 265, 273, 313
SfcI	CTRYAG	1 cut(s)	316
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	245, 320
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	176, 325
TseFI	GTSAC	2 cut(s)	157, 188
TseI	GCWGC	2 cut(s)	101, 251
Tsp45I	GTSAC	2 cut(s)	157, 188
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	176, 325
XceI	RCATGY	1 cut(s)	99
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.