Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Reverse (-)

58637103 .. 58639066

Gene Structure 1964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAACAAGACATTGTTCGAGCTTTCCTCGAAGACAGAAACGTAATTAAGCGCCTAGTTATCAAGGTAGGAACTGCGGTTGTGACTGAAAAGGATGGAAGAATTGCGCTTGAAAGATTACAAGTGCTTTGTGAGAAGCTTAAGGAGTTGAGATCTCAAGAATATGAGGTGATGTTGGTGACATCAGGAGGTGTGGCCCTTGGTCGTCAAGTGCTGAGAGACAGGATATCAGTTCACAACAGTAGTTGCAGCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGGTGGCTCTCTTTAAGACCGTGTTTAGTGAGGAAGATGTGACAGAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGGACAGATTTATATGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATCCTAGCTAAGCAGCTAAAGTCTGATCTTCTTATCCTTATGAGTGATGTGAAGGGTCTCTACAGTGGGCCTCCAAGTGACACAAATTCAGAACTCATTCATTCATACATACATAAAGGAGTGGCATCAAGGCGAAGTCACTTTTGGAGTAAAATCAAGAGTGGGACGAGGGGGAATGGCTGCGAAAGTAAAGGCTGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

252

Amino Acids

27.91

Weight (kDa)

5.81

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	17 - 219	2e-28	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	640
AfaI	GTAC	1 cut(s)	493
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	113, 413, 472
AjnI	CCWGG	1 cut(s)	494
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
Alw26I	GTCTC	2 cut(s)	213, 617
AoxI	GGCC	2 cut(s)	195, 623
ApeKI	GCWGC	7 cut(s)	249, 299, 418, 551, 568, 735, 750
ApoI	RAATTY	1 cut(s)	640
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	2 cut(s)	54, 109
AspS9I	GGNCC	2 cut(s)	196, 623
AsuHPI	GGTGA	2 cut(s)	181, 190
BarI	GAAGNNNNNNTAC	2 cut(s)	599, 631
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	7 cut(s)	261, 311, 430, 563, 580, 722, 737
BccI	CCATC	2 cut(s)	89, 278
BciT130I	CCWGG	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	213, 617
BfaI	CTAG	2 cut(s)	56, 560
BfmI	CTRYAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	140
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	7 cut(s)	250, 300, 419, 552, 569, 736, 751
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	7 cut(s)	251, 301, 420, 553, 570, 737, 752
Bme1390I	CCNGG	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	196, 623
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	2 cut(s)	472, 689
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	100, 289
BseMII	CTCAG	2 cut(s)	206, 383
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	7 cut(s)	261, 311, 430, 563, 580, 722, 737
BsgI	GTGCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	197, 625
BsiEI	CGRYCG	1 cut(s)	435
BslFI	GGGAC	2 cut(s)	548, 733
BsmAI	GTCTC	2 cut(s)	213, 617
BsmFI	GGGAC	2 cut(s)	548, 733
BsnI	GGCC	2 cut(s)	197, 625
Bso31I	GGTCTC	1 cut(s)	617
Bsp143I	GATC	5 cut(s)	152, 259, 316, 436, 580
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	197, 625
BspCNI	CTCAG	2 cut(s)	207, 382
BspTI	CTTAAG	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	5 cut(s)	152, 259, 316, 436, 580
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	5 cut(s)	242, 340, 433, 545, 620
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	215, 369, 564
BstF5I	GGATG	2 cut(s)	100, 289
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 109
BstKTI	GATC	5 cut(s)	155, 262, 319, 439, 583
BstMAI	GTCTC	2 cut(s)	213, 617
BstMBI	GATC	5 cut(s)	152, 259, 316, 436, 580
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 560
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	7 cut(s)	261, 311, 430, 563, 580, 722, 737
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	197, 625
BtsCI	GGATG	2 cut(s)	100, 289
BtsIMutI	CAGTG	2 cut(s)	377, 625
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	54, 109
Cfr13I	GGNCC	2 cut(s)	196, 623
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	1 cut(s)	294
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	3 cut(s)	215, 369, 564
DpnI	GATC	5 cut(s)	154, 261, 318, 438, 582
DpnII	GATC	5 cut(s)	152, 259, 316, 436, 580
DraI	TTTAAA	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	297
FaqI	GGGAC	2 cut(s)	548, 733
FatI	CATG	1 cut(s)	293
Fnu4HI	GCNGC	7 cut(s)	250, 300, 419, 552, 569, 736, 751
FokI	GGATG	2 cut(s)	107, 296
Fsp4HI	GCNGC	7 cut(s)	250, 300, 419, 552, 569, 736, 751
FspBI	CTAG	2 cut(s)	56, 560
GlaI	GCGC	2 cut(s)	53, 108
GluI	GCNGC	7 cut(s)	250, 300, 419, 552, 569, 736, 751
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	197, 625
HhaI	GCGC	2 cut(s)	54, 109
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	2 cut(s)	52, 107
HinP1I	GCGC	2 cut(s)	52, 107
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	515
HphI	GGTGA	2 cut(s)	181, 190
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	580, 646
Hpy188III	TCNNGA	3 cut(s)	158, 186, 712
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	283, 601
HpyCH4III	ACNGT	5 cut(s)	242, 340, 433, 545, 620
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	249, 299, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 560
HpyF3I	CTNAG	3 cut(s)	215, 369, 564
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	2 cut(s)	52, 107
Kzo9I	GATC	5 cut(s)	152, 259, 316, 436, 580
LpnPI	CCDG	9 cut(s)	171, 208, 266, 285, 305, 327, 481, 507, 508
Lsp1109I	GCAGC	7 cut(s)	261, 311, 430, 563, 580, 722, 737
LweI	GCATC	2 cut(s)	472, 689
MaeI	CTAG	2 cut(s)	56, 560
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	7 cut(s)	82, 178, 358, 379, 389, 632, 692
MalI	GATC	5 cut(s)	154, 261, 318, 438, 582
MboI	GATC	5 cut(s)	152, 259, 316, 436, 580
MboII	GAAGA	5 cut(s)	44, 111, 365, 510, 575
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	3 cut(s)	45, 102, 640
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	7 cut(s)	38, 160, 182, 343, 505, 636, 717
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	4 cut(s)	48, 141, 333, 452
MspA1I	CMGCKG	3 cut(s)	275, 302, 421
MspCI	CTTAAG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	299, 560
NdeII	GATC	5 cut(s)	152, 259, 316, 436, 580
NlaIII	CATG	1 cut(s)	297
NmuCI	GTSAC	7 cut(s)	82, 178, 358, 379, 389, 632, 692
NspI	RCATGY	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	7 cut(s)	251, 301, 420, 553, 570, 737, 752
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspPI	GGNCC	2 cut(s)	196, 623
PsuI	RGATCY	1 cut(s)	152
PvuII	CAGCTG	3 cut(s)	275, 302, 421
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	48, 141, 333, 452
SatI	GCNGC	7 cut(s)	250, 300, 419, 552, 569, 736, 751
Sau3AI	GATC	5 cut(s)	152, 259, 316, 436, 580
Sau96I	GGNCC	2 cut(s)	196, 623
ScrFI	CCNGG	1 cut(s)	496
SfaNI	GCATC	2 cut(s)	472, 689
SfcI	CTRYAG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	140, 156
SmoI	CTYRAG	2 cut(s)	140, 156
Sse9I	AATT	3 cut(s)	45, 102, 640
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	56, 560
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	242, 340, 433, 545, 620
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	19, 30, 435
TasI	AATT	3 cut(s)	45, 102, 640
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	4 cut(s)	48, 141, 333, 452
Tru9I	TTAA	4 cut(s)	48, 141, 333, 452
TscAI	CASTG	2 cut(s)	377, 625
TseFI	GTSAC	7 cut(s)	82, 178, 358, 379, 389, 632, 692
TseI	GCWGC	7 cut(s)	249, 299, 418, 551, 568, 735, 750
Tsp45I	GTSAC	7 cut(s)	82, 178, 358, 379, 389, 632, 692
TspDTI	ATGAA	3 cut(s)	489, 644, 648
TspRI	CASTG	2 cut(s)	377, 625
Vha464I	CTTAAG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	2 cut(s)	56, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.