Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

30633060 .. 30634801

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGTTGCAGCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGTCCGTGTTTAGTGAGGATGTGACACAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

146

Amino Acids

15.8

Weight (kDa)

4.48

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	33 - 146	8.7e-18	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	218, 277
AluBI	AGCT	8 cut(s)	60, 83, 110, 173, 226, 359, 368, 376
AluI	AGCT	8 cut(s)	60, 83, 110, 173, 226, 359, 368, 376
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	3 cut(s)	3, 48, 428
ApeKI	GCWGC	4 cut(s)	57, 107, 223, 356
AspS9I	GGNCC	2 cut(s)	48, 428
BbvI	GCAGC	4 cut(s)	69, 119, 235, 368
BccI	CCATC	2 cut(s)	86, 124
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	421
BisI	GCNGC	4 cut(s)	58, 108, 224, 357
BlsI	GCNGC	4 cut(s)	59, 109, 225, 358
BmgT120I	GGNCC	2 cut(s)	48, 428
BmsI	GCATC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	51, 93
BseGI	GGATG	2 cut(s)	97, 166
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	51, 93
BseXI	GCAGC	4 cut(s)	69, 119, 235, 368
BsgI	GTGCAG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	5, 50, 430
BsiEI	CGRYCG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	5, 50, 430
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	4 cut(s)	67, 124, 241, 385
BspANI	GGCC	3 cut(s)	5, 50, 430
BspCNI	CTCAG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	51, 93
BssMI	GATC	4 cut(s)	67, 124, 241, 385
Bst4CI	ACNGT	3 cut(s)	238, 350, 425
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	174, 369
BstF5I	GGATG	2 cut(s)	97, 166
BstKTI	GATC	4 cut(s)	70, 127, 244, 388
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	67, 124, 241, 385
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 365
BstNSI	RCATGY	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	69, 119, 235, 368
BsuRI	GGCC	3 cut(s)	5, 50, 430
BtsCI	GGATG	2 cut(s)	97, 166
BtsIMutI	CAGTG	2 cut(s)	182, 430
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	48, 428
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	1 cut(s)	102
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	174, 369
DpnI	GATC	4 cut(s)	69, 126, 243, 387
DpnII	GATC	4 cut(s)	67, 124, 241, 385
DraI	TTTAAA	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	105
FaiI	YATR	7 cut(s)	103, 266, 272, 313, 332, 362, 401
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	58, 108, 224, 357
FokI	GGATG	2 cut(s)	104, 173
Fsp4HI	GCNGC	4 cut(s)	58, 108, 224, 357
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	4 cut(s)	58, 108, 224, 357
HaeIII	GGCC	3 cut(s)	5, 50, 430
Hin1II	CATG	1 cut(s)	105
HinfI	GANTC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	16, 91
HpyCH4III	ACNGT	3 cut(s)	238, 350, 425
HpyCH4V	TGCA	3 cut(s)	57, 107, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 365
HpyF3I	CTNAG	2 cut(s)	174, 369
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	67, 124, 241, 385
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	27, 64, 74, 93, 135, 312, 313
Lsp1109I	GCAGC	4 cut(s)	69, 119, 235, 368
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	3 cut(s)	163, 184, 194
MalI	GATC	4 cut(s)	69, 126, 243, 387
MboI	GATC	4 cut(s)	67, 124, 241, 385
MboII	GAAGA	3 cut(s)	21, 315, 380
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	5 cut(s)	14, 151, 310, 406, 441
MseI	TTAA	2 cut(s)	141, 257
MspA1I	CMGCKG	3 cut(s)	83, 110, 226
MwoI	GCNNNNNNNGC	2 cut(s)	107, 365
NdeII	GATC	4 cut(s)	67, 124, 241, 385
NlaIII	CATG	1 cut(s)	105
NmuCI	GTSAC	3 cut(s)	163, 184, 194
NspI	RCATGY	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	59, 109, 225, 358
PspPI	GGNCC	2 cut(s)	48, 428
PvuII	CAGCTG	3 cut(s)	83, 110, 226
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	141, 257
SatI	GCNGC	4 cut(s)	58, 108, 224, 357
Sau3AI	GATC	4 cut(s)	67, 124, 241, 385
Sau96I	GGNCC	2 cut(s)	48, 428
SetI	ASST	9 cut(s)	62, 85, 112, 175, 228, 271, 361, 370, 378
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	421
SspMI	CTAG	1 cut(s)	365
TaaI	ACNGT	3 cut(s)	238, 350, 425
TaqI	TCGA	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	141, 257
Tru9I	TTAA	2 cut(s)	141, 257
TscAI	CASTG	2 cut(s)	182, 430
TseFI	GTSAC	3 cut(s)	163, 184, 194
TseI	GCWGC	4 cut(s)	57, 107, 223, 356
Tsp45I	GTSAC	3 cut(s)	163, 184, 194
TspDTI	ATGAA	2 cut(s)	21, 294
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	182, 430
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.