Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Reverse (-)

11607600 .. 11609389

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATCTCCCCCAAAAGCAGACAACTCAAAACCCTAAACAACATAGAAAATGATCAGAACCTCCAATCCGGCACCGCCGCCGCCAACTCCACCACAACTCCTTACTTACCTGACAACGTTATCGAACAAATCCTCTCCTTCCTTCCGATCAAACTCGTGACGCAGGCAACCACCGTTTCGAAGCGGTGGGCTGACTTGTGGCCTTCCTTGCCTATAATTGATTTCGATGAGGGCGATCCCACAGATCCAGACGACCCAGCCAAACATCAACGCTTCATCAGATTCTTAAGGAACTGTTTGGAACGCTGCGAGAAACAGACGCTCGTAGATAAGTTCAGGCTTCGAATGAGATACCATGGAGTTGGAGAGGACGAAGACATTGTAGACGATTGGATAGTTTTCTCAATCCTGACATGTGTAAAAGAGTTTGATCTCTGTTTAGTTCGAGGCGGCGAATTCAGAGATGTGTGGACAACTGATCTCAACGAAGACGTTGCTAGACTCTACCTCATACCGCAACGAATTTTCTCTTCAAACTGTTTAACTAGTCTCAAGTTGGAGAATGTGAGCTATTTCAGTCGTGCAACTGGTACTCCTATAAGCCTACCGTCATTGAAAACCATGTCCCTCAAGCATGTGGAGTTCGATGAGAAAGATGGTGATCACCGCGCCCTCCCCAGAATGGAGAACTCAATTTTCACTCCAAATCTAGTTTCTGTTATGTTTAGCGGTCGTGTGAAGGCGAAGGTTCATTTCGTTGAAGCTCCATCAAATTTATTAGATGCTAAAATTGGAGTTTATTTCGAGAAACGTCAGTCGACCTTTAATTATTATTCTGATCTGAGAGATTTTCTTGAAAGCTTCAATTGCTCCAGGAAAGTGGAGATATCTATTCGTGATGTTGAGGGAGTCATAATACCAGAACCTTGCAGAATGGAATGGTCTCCACCATTACCTAGTATCAAGCAGCTGCAACTAATCTATTTAGTTCCATTCGAGGACAGACATTACAGGTTGAATTCCTCCTTGGCTTGGATAGCACCATCTGCAGAGATTCTACCCCATCAGCGTTATTTTCTCATAAGATATAATAAAGCATTGCTTTTGGGGATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

372

Amino Acids

42.99

Weight (kDa)

6.21

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	384, 818
AccII	CGCG	1 cut(s)	669
AciI	CCGC	8 cut(s)	75, 78, 81, 184, 450, 515, 667, 729
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	230, 239
AcsI	RAATTY	4 cut(s)	455, 522, 772, 1018
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	2 cut(s)	682, 1032
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	534, 616, 761, 857, 865, 1018
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	872
AjuI	GAANNNNNNNTTGG	4 cut(s)	697, 729, 1010, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	4 cut(s)	570, 764, 861, 970
AluI	AGCT	4 cut(s)	570, 764, 861, 970
Alw26I	GTCTC	2 cut(s)	554, 948
AlwI	GGATC	2 cut(s)	230, 239
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	306, 967, 970
ApoI	RAATTY	4 cut(s)	455, 522, 772, 1018
AspLEI	GCGC	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	656, 671
AsuII	TTCGAA	2 cut(s)	179, 343
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	381, 495
BbvI	GCAGC	3 cut(s)	293, 957, 979
BccI	CCATC	4 cut(s)	650, 775, 1051, 1071
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	874
BclI	TGATCA	2 cut(s)	52, 661
BcoDI	GTCTC	2 cut(s)	554, 948
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	4 cut(s)	498, 546, 710, 957
BfmI	CTRYAG	1 cut(s)	1047
BfrI	CTTAAG	1 cut(s)	286
BisI	GCNGC	6 cut(s)	78, 81, 307, 451, 968, 971
BlsI	GCNGC	6 cut(s)	79, 82, 308, 452, 969, 972
Bme1390I	CCNGG	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	874
BmsI	GCATC	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	381, 495
BpmI	CTGGAG	1 cut(s)	856
Bpu14I	TTCGAA	2 cut(s)	179, 343
BpuEI	CTTGAG	2 cut(s)	536, 614
BsaBI	GATNNNNATC	1 cut(s)	660
BsaI	GGTCTC	1 cut(s)	948
BsaJI	CCNNGG	2 cut(s)	355, 1026
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	682, 1032
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	1097
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	874
BseDI	CCNNGG	2 cut(s)	355, 1026
BseGI	GGATG	1 cut(s)	1116
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	2 cut(s)	682, 1032
BseMI	GCAATG	1 cut(s)	1097
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	293, 957, 979
BseYI	CCCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	733
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	682, 1032
BsmAI	GTCTC	2 cut(s)	554, 948
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	948
Bsp119I	TTCGAA	2 cut(s)	179, 343
Bsp143I	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	8 cut(s)	75, 78, 81, 184, 450, 515, 667, 729
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	834
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	2 cut(s)	230, 239
BspT104I	TTCGAA	2 cut(s)	179, 343
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	948
BsrDI	GCAATG	1 cut(s)	1097
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	355, 1026
BssMI	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	355, 1026
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	4 cut(s)	175, 296, 539, 609
Bst6I	CTCTTC	1 cut(s)	535
BstAFI	CTTAAG	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	1046
BstBI	TTCGAA	2 cut(s)	179, 343
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	842
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	1116
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	9 cut(s)	6, 55, 150, 238, 247, 433, 481, 664, 841
BstMAI	GTCTC	2 cut(s)	554, 948
BstMBI	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 867, 1037, 1046
BstNI	CCWGG	1 cut(s)	874
BstNSI	RCATGY	2 cut(s)	417, 638
BstSCI	CCNGG	1 cut(s)	872
BstSFI	CTRYAG	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	3 cut(s)	293, 957, 979
BstV2I	GAAGAC	2 cut(s)	381, 495
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	2 cut(s)	362, 880
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	1116
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	671
CseI	GACGC	2 cut(s)	169, 328
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	4 cut(s)	356, 414, 622, 635
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	1 cut(s)	842
DpnI	GATC	9 cut(s)	5, 54, 149, 237, 246, 432, 480, 663, 840
DpnII	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	355, 1026
Eco31I	GGTCTC	1 cut(s)	948
Eco32I	GATATC	1 cut(s)	888
EcoRI	GAATTC	2 cut(s)	455, 1018
EcoRII	CCWGG	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	888
EcoT14I	CCWWGG	2 cut(s)	355, 1026
ErhI	CCWWGG	2 cut(s)	355, 1026
FaeI	CATG	4 cut(s)	359, 417, 625, 638
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	4 cut(s)	355, 413, 621, 634
FbaI	TGATCA	2 cut(s)	52, 661
FblI	GTMKAC	2 cut(s)	384, 818
Fnu4HI	GCNGC	6 cut(s)	78, 81, 307, 451, 968, 971
Fsp4HI	GCNGC	6 cut(s)	78, 81, 307, 451, 968, 971
FspBI	CTAG	4 cut(s)	498, 546, 710, 957
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	6 cut(s)	78, 81, 307, 451, 968, 971
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	856
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	169, 328
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	359, 417, 625, 638
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	4 cut(s)	282, 501, 909, 1054
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	656, 671
Hpy166II	GTNNAC	3 cut(s)	385, 471, 819
Hpy188I	TCNGA	6 cut(s)	57, 147, 281, 461, 838, 843
Hpy188III	TCNNGA	6 cut(s)	157, 248, 409, 805, 854, 896
Hpy8I	GTNNAC	3 cut(s)	385, 471, 819
HpyAV	CCTTC	5 cut(s)	148, 152, 213, 733, 739
HpyCH4III	ACNGT	4 cut(s)	175, 296, 539, 609
HpyCH4IV	ACGT	3 cut(s)	117, 492, 811
HpyCH4V	TGCA	4 cut(s)	584, 930, 973, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 867, 1037, 1046
HpyF3I	CTNAG	1 cut(s)	842
HpySE526I	ACGT	3 cut(s)	117, 492, 811
Hsp92II	CATG	4 cut(s)	359, 417, 625, 638
HspAI	GCGC	1 cut(s)	669
Ksp22I	TGATCA	2 cut(s)	52, 661
Kzo9I	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
LmnI	GCTCC	2 cut(s)	769, 875
Lsp1109I	GCAGC	3 cut(s)	293, 957, 979
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	4 cut(s)	498, 546, 710, 957
MaeII	ACGT	3 cut(s)	117, 492, 811
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	9 cut(s)	5, 54, 149, 237, 246, 432, 480, 663, 840
MboI	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
MboII	GAAGA	3 cut(s)	386, 500, 522
MfeI	CAATTG	1 cut(s)	865
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	9 cut(s)	216, 455, 522, 693, 772, 789, 826, 865, 1018
MlyI	GAGTC	2 cut(s)	495, 918
MmeI	TCCRAC	2 cut(s)	343, 537
MseI	TTAA	3 cut(s)	287, 542, 825
MspA1I	CMGCKG	1 cut(s)	970
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	874
MunI	CAATTG	1 cut(s)	865
MvaI	CCWGG	1 cut(s)	874
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	208, 867, 1037, 1046
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
NlaIII	CATG	4 cut(s)	359, 417, 625, 638
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	2 cut(s)	417, 638
NspV	TTCGAA	2 cut(s)	179, 343
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	282, 1054
PfoI	TCCNGGA	1 cut(s)	872
PkrI	GCNGC	6 cut(s)	79, 82, 308, 452, 969, 972
PleI	GAGTC	2 cut(s)	495, 917
PpsI	GAGTC	2 cut(s)	495, 917
PscI	ACATGT	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	872
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	1051
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	817
SaqAI	TTAA	3 cut(s)	287, 542, 825
SatI	GCNGC	6 cut(s)	78, 81, 307, 451, 968, 971
Sau3AI	GATC	9 cut(s)	3, 52, 147, 235, 244, 430, 478, 661, 838
SchI	GAGTC	2 cut(s)	495, 918
ScrFI	CCNGG	1 cut(s)	874
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	1047
SfuI	TTCGAA	2 cut(s)	179, 343
SmlI	CTYRAG	3 cut(s)	286, 551, 629
SmoI	CTYRAG	3 cut(s)	286, 551, 629
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	9 cut(s)	216, 455, 522, 693, 772, 789, 826, 865, 1018
SsiI	CCGC	8 cut(s)	75, 78, 81, 184, 450, 515, 667, 729
SspMI	CTAG	4 cut(s)	498, 546, 710, 957
StyD4I	CCNGG	1 cut(s)	872
StyI	CCWWGG	2 cut(s)	355, 1026
TaaI	ACNGT	4 cut(s)	175, 296, 539, 609
TaiI	ACGT	3 cut(s)	120, 495, 814
TaqI	TCGA	9 cut(s)	123, 179, 225, 343, 445, 645, 804, 818, 996
TasI	AATT	9 cut(s)	216, 455, 522, 693, 772, 789, 826, 865, 1018
TauI	GCSGC	3 cut(s)	80, 83, 453
TfiI	GAWTC	2 cut(s)	282, 1054
Tru1I	TTAA	3 cut(s)	287, 542, 825
Tru9I	TTAA	3 cut(s)	287, 542, 825
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	306, 967, 970
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	265, 740
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	4 cut(s)	455, 522, 772, 1018
XceI	RCATGY	2 cut(s)	417, 638
XmiI	GTMKAC	2 cut(s)	384, 818
XspI	CTAG	4 cut(s)	498, 546, 710, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.