Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

36085948 .. 36102089

Gene Structure 16142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAATTCCTCCTCACTAATATTGCATCGGTTCTTGTGCTTCAATGCCTCGCCTCCATCTTCTTGTTCTTCTATTCTATGCTTCTCTTCCAACAGGAATAGGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGTTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATTACTGCCGCATACGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

146

Amino Acids

15.79

Weight (kDa)

10.38

Isoelectric Point (pI)

64.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	44 - 146	3.7e-21	Formyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AciI	CCGC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	327, 367, 368
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	43, 428
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	260, 285, 293, 434
AluI	AGCT	4 cut(s)	260, 285, 293, 434
Alw26I	GTCTC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	422
ApeKI	GCWGC	4 cut(s)	137, 298, 397, 416
ApoI	RAATTY	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	374
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	4 cut(s)	149, 310, 384, 428
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	175, 385
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	138, 299, 321, 398, 417
BlsI	GCNGC	5 cut(s)	139, 300, 322, 399, 418
Bme1390I	CCNGG	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 367, 368
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	327, 367, 368
BseMII	CTCAG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	149, 310, 384, 428
BsgI	GTGCAG	2 cut(s)	237, 435
BslI	CCNNNNNNNGG	3 cut(s)	327, 367, 368
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	259
BspTI	CTTAAG	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	91
BstAFI	CTTAAG	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	118, 129
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	149, 310, 384, 428
BstV2I	GAAGAC	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	422
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	8 cut(s)	106, 123, 225, 260, 285, 293, 301, 434
CviKI_1	RGCY	8 cut(s)	106, 123, 225, 260, 285, 293, 301, 434
DdeI	CTNAG	2 cut(s)	118, 129
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	212
FaiI	YATR	5 cut(s)	79, 210, 272, 325, 383
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	138, 299, 321, 398, 417
Fsp4HI	GCNGC	5 cut(s)	138, 299, 321, 398, 417
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	5 cut(s)	138, 299, 321, 398, 417
GsuI	CTGGAG	1 cut(s)	282
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	215, 361
HpyAV	CCTTC	3 cut(s)	168, 175, 240
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	6 cut(s)	25, 137, 254, 298, 312, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	118, 129
Hsp92II	CATG	1 cut(s)	212
Lsp1109I	GCAGC	4 cut(s)	149, 310, 384, 428
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	6 cut(s)	51, 60, 78, 106, 178, 190
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	4, 141
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	9 cut(s)	19, 22, 58, 63, 119, 138, 215, 248, 259
MseI	TTAA	2 cut(s)	287, 354
MspCI	CTTAAG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	139, 300, 322, 399, 418
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	287, 354
SatI	GCNGC	5 cut(s)	138, 299, 321, 398, 417
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	2 cut(s)	4, 141
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	376
TasI	AATT	2 cut(s)	4, 141
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	287, 354
Tru9I	TTAA	2 cut(s)	287, 354
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	4 cut(s)	137, 298, 397, 416
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.