Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008880

Physical Location & Seq

Genomic Coordinates Forward (+)

36102127 .. 36106239

Gene Structure 4113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAAATTAGCATATATGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCATGCGCTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTATTTTCTGAAGTCTATATTGCCTCTTCAGTTTCATTAACAAGAGCCACATGTAACAGCCACATAAGGGGCTGCATAAGGATCCAAACTATTGATTCACCAGCTCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCTCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCTGCATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACGATAAAAACGGTCACCGCAATATGCTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCATAGCAATATTCAGGTCAACCAAGCAGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGCGGGTCCACATCACTTGAGGTGCTAGAGATTCAGCTTCCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

229

Amino Acids

24.93

Weight (kDa)

6.52

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_C	PF02911	109 - 218	8.4e-18	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21760
rosa_chinensis	RchiOBHm_Chr1g0352531 RchiOBHm_Chr1g0368581
rosa_laevigata	RLG00000018405 RLG00000030185 RLG00000035725 RLG00000035920
rosa_multiflora	Rmu_sc0011394.1_g000005
rosa_roxburghii	Rroxscaffold_4G00288430
rosa_rugosa	Rorug01G0191000 Rorug02G0392000 Rorug03G0326400 Rorug03G0326500 Rorug03G0326600 Rorug05G0180300 Rorug05G0325000 Rorug05G0565300 Rorug05G0565300 Rorug06G0086600
rosa_samantha	Rh1BG313500 Rh1DG344900 Rh5BG150200 Rh7BG316500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	2 cut(s)	457, 573
AclWI	GGATC	2 cut(s)	220, 233
AcuI	CTGAAG	2 cut(s)	156, 174
AfiI	CCNNNNNNNGG	4 cut(s)	67, 211, 572, 573
AflIII	ACRYGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	409, 610
AluBI	AGCT	9 cut(s)	248, 275, 311, 320, 368, 422, 472, 607, 635
AluI	AGCT	9 cut(s)	248, 275, 311, 320, 368, 422, 472, 607, 635
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	220, 233
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	4 cut(s)	216, 498, 632, 635
AspLEI	GCGC	2 cut(s)	67, 289
AspS9I	GGNCC	2 cut(s)	77, 576
AsuHPI	GGTGA	2 cut(s)	234, 446
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	77, 576
AxyI	CCTNAGG	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	203, 510, 622, 644
BccI	CCATC	3 cut(s)	14, 260, 399
BciT130I	CCWGG	2 cut(s)	411, 612
BciVI	GTATCC	1 cut(s)	52
BclI	TGATCA	2 cut(s)	112, 358
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	217, 499, 633, 636
BlsI	GCNGC	4 cut(s)	218, 500, 634, 637
Bme1390I	CCNGG	2 cut(s)	411, 612
Bme18I	GGWCC	2 cut(s)	77, 576
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	77, 576
BmiI	GGNNCC	3 cut(s)	126, 227, 577
BmrFI	CCNGG	2 cut(s)	411, 612
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 211, 572, 573
Bse1I	ACTGG	2 cut(s)	90, 105
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	411, 612
BseGI	GGATG	3 cut(s)	76, 304, 410
BseLI	CCNNNNNNNGG	4 cut(s)	67, 211, 572, 573
BseMII	CTCAG	2 cut(s)	308, 327
BseNI	ACTGG	2 cut(s)	90, 105
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	203, 510, 622, 644
BshFI	GGCC	1 cut(s)	409
BshNI	GGYRCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	417
BslI	CCNNNNNNNGG	4 cut(s)	67, 211, 572, 573
BsmAI	GTCTC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	112, 225, 358
BspACI	CCGC	2 cut(s)	457, 573
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	307, 328
BspLI	GGNNCC	3 cut(s)	126, 227, 577
BspPI	GGATC	2 cut(s)	220, 233
BspQI	GCTCTTC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	90, 105
BssMI	GATC	3 cut(s)	112, 225, 358
Bst2UI	CCWGG	2 cut(s)	411, 612
Bst4CI	ACNGT	3 cut(s)	58, 452, 650
Bst6I	CTCTTC	2 cut(s)	175, 255
BstBAI	YACGTR	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	46, 294, 336
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	76, 304, 410
BstHHI	GCGC	2 cut(s)	67, 289
BstKTI	GATC	3 cut(s)	115, 228, 361
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	112, 225, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 317, 504
BstNI	CCWGG	2 cut(s)	411, 612
BstNSI	RCATGY	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	409, 610
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	203, 510, 622, 644
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	76, 304, 410
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	67, 289
Cfr13I	GGNCC	2 cut(s)	77, 576
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	3 cut(s)	62, 195, 345
DdeI	CTNAG	3 cut(s)	46, 294, 336
DpnI	GATC	3 cut(s)	114, 227, 360
DpnII	GATC	3 cut(s)	112, 225, 358
Eam1104I	CTCTTC	2 cut(s)	175, 255
EarI	CTCTTC	2 cut(s)	175, 255
Eco47I	GGWCC	2 cut(s)	77, 576
Eco57I	CTGAAG	2 cut(s)	156, 174
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	417
Eco91I	GGTNACC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	409, 610
FaeI	CATG	3 cut(s)	65, 198, 348
FatI	CATG	3 cut(s)	61, 194, 344
FauI	CCCGC	1 cut(s)	566
FbaI	TGATCA	2 cut(s)	112, 358
Fnu4HI	GCNGC	4 cut(s)	217, 499, 633, 636
FokI	GGATG	3 cut(s)	83, 311, 417
Fsp4HI	GCNGC	4 cut(s)	217, 499, 633, 636
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	2 cut(s)	66, 288
GluI	GCNGC	4 cut(s)	217, 499, 633, 636
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	67, 289
Hin1II	CATG	3 cut(s)	65, 198, 348
Hin6I	GCGC	2 cut(s)	65, 287
HinP1I	GCGC	2 cut(s)	65, 287
HincII	GTYRAC	3 cut(s)	439, 520, 662
HindII	GTYRAC	3 cut(s)	439, 520, 662
HinfI	GANTC	4 cut(s)	239, 302, 341, 601
HphI	GGTGA	2 cut(s)	234, 446
Hpy166II	GTNNAC	5 cut(s)	439, 520, 579, 653, 662
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	296, 335, 362, 643
Hpy8I	GTNNAC	5 cut(s)	439, 520, 579, 653, 662
HpyAV	CCTTC	3 cut(s)	264, 613, 649
HpyCH4III	ACNGT	3 cut(s)	58, 452, 650
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	7 cut(s)	219, 379, 395, 401, 498, 554, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 317, 504
HpyF3I	CTNAG	3 cut(s)	46, 294, 336
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	3 cut(s)	65, 198, 348
HspAI	GCGC	2 cut(s)	65, 287
Ksp22I	TGATCA	2 cut(s)	112, 358
Kzo9I	GATC	3 cut(s)	112, 225, 358
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	325, 469
Lsp1109I	GCAGC	4 cut(s)	203, 510, 622, 644
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	2 cut(s)	197, 452
MalI	GATC	3 cut(s)	114, 227, 360
MboI	GATC	3 cut(s)	112, 225, 358
MboII	GAAGA	2 cut(s)	162, 242
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	5 cut(s)	6, 105, 117, 278, 477
MlyI	GAGTC	2 cut(s)	296, 350
MnlI	CCTC	3 cut(s)	178, 331, 583
MseI	TTAA	5 cut(s)	120, 182, 281, 474, 669
MspA1I	CMGCKG	1 cut(s)	635
MspR9I	CCNGG	2 cut(s)	411, 612
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	411, 612
MwoI	GCNNNNNNNGC	3 cut(s)	71, 317, 504
NdeII	GATC	3 cut(s)	112, 225, 358
NlaIII	CATG	3 cut(s)	65, 198, 348
NlaIV	GGNNCC	3 cut(s)	126, 227, 577
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	417
PciI	ACATGT	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	239, 601
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	218, 500, 634, 637
PleI	GAGTC	2 cut(s)	296, 349
PpsI	GAGTC	2 cut(s)	296, 349
Ppu21I	YACGTR	1 cut(s)	656
PscI	ACATGT	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	409, 610
PspEI	GGTNACC	1 cut(s)	452
PspGI	CCWGG	2 cut(s)	409, 610
PspN4I	GGNNCC	3 cut(s)	126, 227, 577
PspPI	GGNCC	2 cut(s)	77, 576
PspXI	VCTCGAGB	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	5 cut(s)	120, 182, 281, 474, 669
SatI	GCNGC	4 cut(s)	217, 499, 633, 636
Sau3AI	GATC	3 cut(s)	112, 225, 358
Sau96I	GGNCC	2 cut(s)	77, 576
SchI	GAGTC	2 cut(s)	296, 350
ScrFI	CCNGG	2 cut(s)	411, 612
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	2 cut(s)	77, 576
SlaI	CTCGAG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	417, 587
SmoI	CTYRAG	2 cut(s)	417, 587
Sse9I	AATT	5 cut(s)	6, 105, 117, 278, 477
SsiI	CCGC	2 cut(s)	457, 573
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	2 cut(s)	409, 610
TaaI	ACNGT	3 cut(s)	58, 452, 650
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	2 cut(s)	418, 544
TasI	AATT	5 cut(s)	6, 105, 117, 278, 477
TfiI	GAWTC	2 cut(s)	239, 601
Tru1I	TTAA	5 cut(s)	120, 182, 281, 474, 669
Tru9I	TTAA	5 cut(s)	120, 182, 281, 474, 669
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	4 cut(s)	216, 498, 632, 635
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	168, 641
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	77, 576
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	417
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.