Prupe.6G098800_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017273
Physical Location & Seq
Forward (+)
6877685 .. 6879530
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G098800.1

Sequence Viewer

Length: 1518 bp
ATGATGTCCGAAGATGGGCTCTCAATTCCCTCCACCATCAAAGGGTTAGCTCAAGAACTAAGTTCCAGCCCTAACCCTAACCCTAATACCGATAATCAGCTCAAGAGGAAGAGGAATTTACCTGGAACTCCAGGAAAGTATCCAGATGCAGAAGTCATAGCTTTGTCCCCAAAATCTCTAATGGCCACAAACCGATTCGTTTGCGAAATATGCAACAAGGGATTCCAGAGAGACCAGAACTTGCAGCTTCACCGACGCGGCCACAACCTTCCATGGAAGCTCAAACAAAGATCAAACAAAGAAGTGATTCGAAAAAAGGTGTACGTGTGCCCGGAAAGGACATGCGTGCACCACGAGCCTTCCCGAGCACTCGGAGACCTCACCGGAATCAAAAAGCACTTCAGCCGAAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAAATACGCAGTTCAATCGGATTGGAAGGCTCATAGCAAGGTTTGTGGGACTAGAGAGTATAGATGTGACTGTGGCACACTTTTTTCCAGGAAGGACAGCTTCATAACTCATCGAGCTTTCTGTGATGCATTGGCGGCTGAAGAAAGTGCAAGGTTTGGTTCAGCTTCAACTACCAATATGAATCCAAGCTTCATCAATGGGTGCAATAATATTACCAACATTAACCCTCATCATCAACCACCAAGAATCCCTCATTTTATACCAATGTTTCAGCAAGAATTTGCTGGCTCAGACCCTGCTGCCGCCAACAATTCTCATCTCAATTCCAATGCTTTTATGCCGGAATTGGTGGCGACAGCTTCTATGGACATGTTTGGATCTTCATCGTCATCACAGACGCAGTGGCTCATCAACAACACTAAGTTCCCGGAAGAGGCATCGTTTAATCTCTCCATGTCATCTTCGTCGTTGGCTCGGGGACTTAAGGAGGAATTAGAAGAATCCAAAGGAAGTTTGTCTGGAACGATAAGTGCTTCTGCTACCTCTTTCTATAACAACAACAATCACCAACACCAACCCATGTCAGCCACAGCACTTTTGCAAAAAGCAGCTCAAATGGGATCTACAAGAAGCAGCAACAACAACAACAACAACAACAACAACCCAGCGACAACATTCAACGACACTGCCTTTGGTTTCATGAGCACATCGTCCAATTCTTCCCACAATATGTCAAACCAGCTCAGTTCATATGGCCACCACCACAACAAAAATGAAGTTGAGAGCTTCAATGATTTGGTGAATTCCATGTCTTCTTCAACTCCAGCAACCACAATTCGAGACGGATCGTTGTTCTCTAGCTCCTTCTTGAGCAACAAACACTTGATGAATATGCCTGGAGCAGCCAATCTGATAAAACAAAGCCAAAGTGAGCAAAGTAGTCTAACTAGAGATTTTCTCGGAGTAGGAGGCGATGCGATTAGCGGAGTGCCCTTCTTTCAACAAGAGCTAGCCAAGTTAGCTTCAATGGGTGACTTGAGTCAATACACTAGTAGTGGTCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

506

Amino Acids

55.58

Weight (kDa)

9.07

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017273)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32700
malus_domestica MD03G1114800.v1.1 MD11G1133100.v1.1
prunus_persica Prupe.6G098800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059771
rosa_laevigata RLG00000035327
rosa_roxburghii Rroxscaffold_1G00020810
rosa_rugosa Rorug05G0325000
rosa_samantha Rh5AG390400 Rh5BG401800 Rh5CG425900 Rh5DG418200
rosa_wichuraiana Rw5G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 258
AciI CCGC 4 cut(s) 258, 584, 753, 1434
AclWI GGATC 3 cut(s) 835, 1078, 1303
AcoI YGGCCR 3 cut(s) 183, 259, 1204
AcsI RAATTY 3 cut(s) 115, 728, 1252
AcuI CTGAAG 2 cut(s) 385, 609
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 3 cut(s) 15, 42, 883
AflII CTTAAG 1 cut(s) 932
AflIII ACRYGT 2 cut(s) 324, 819
AgsI TTSAA 7 cut(s) 464, 618, 1129, 1240, 1269, 1451, 1476
AhlI ACTAGT 1 cut(s) 1499
AjnI CCWGG 4 cut(s) 121, 130, 536, 1345
Alw21I GWGCWC 3 cut(s) 351, 370, 1157
Alw26I GTCTC 3 cut(s) 225, 369, 1284
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 3 cut(s) 835, 1078, 1303
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 2 cut(s) 363, 924
AoxI GGCC 3 cut(s) 183, 259, 1204
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 244, 749, 1058, 1083, 1352
ApoI RAATTY 3 cut(s) 115, 728, 1252
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
Asp700I GAANNNNTTC 1 cut(s) 306
AsuC2I CCSGG 2 cut(s) 332, 878
AsuHPI GGTGA 6 cut(s) 242, 373, 428, 1007, 1261, 1493
AsuII TTCGAA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 1459
AvaI CYCGRG 2 cut(s) 363, 924
BaeGI GKGCMC 3 cut(s) 332, 351, 1443
BalI TGGCCA 2 cut(s) 185, 1206
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 1254
Bbv12I GWGCWC 3 cut(s) 351, 370, 1157
BbvI GCAGC 5 cut(s) 256, 736, 1070, 1095, 1364
BccI CCATC 2 cut(s) 8, 44
BcgI CGANNNNNNTGC 4 cut(s) 183, 217, 447, 481
BciT130I CCWGG 4 cut(s) 123, 132, 538, 1347
BciVI GTATCC 1 cut(s) 150
BcnI CCSGG 2 cut(s) 332, 878
BcoDI GTCTC 3 cut(s) 225, 369, 1284
BcuI ACTAGT 1 cut(s) 1499
BfaI CTAG 5 cut(s) 501, 1308, 1398, 1460, 1500
BfrI CTTAAG 1 cut(s) 932
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 8 cut(s) 245, 259, 585, 750, 753, 1059, 1084, 1353
BlsI GCNGC 8 cut(s) 246, 260, 586, 751, 754, 1060, 1085, 1354
Bme1390I CCNGG 6 cut(s) 123, 132, 332, 538, 878, 1347
BmeT110I CYCGRG 2 cut(s) 363, 924
BmrFI CCNGG 6 cut(s) 123, 132, 332, 538, 878, 1347
BmsI GCATC 4 cut(s) 136, 565, 896, 1414
BmtI GCTAGC 1 cut(s) 1463
BoxI GACNNNNGTC 1 cut(s) 1488
BpiI GAAGAC 1 cut(s) 1254
BplI GAGNNNNNCTC 4 cut(s) 428, 460, 1392, 1424
BpmI CTGGAG 3 cut(s) 114, 1257, 1368
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 4 cut(s) 36, 86, 1339, 1507
BpuMI CCSGG 2 cut(s) 332, 878
BsaAI YACGTR 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 832
BsaI GGTCTC 2 cut(s) 225, 369
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 42, 883
Bse8I GATNNNNATC 1 cut(s) 832
BseBI CCWGG 4 cut(s) 123, 132, 538, 1347
BseDI CCNNGG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 832
BseLI CCNNNNNNNGG 3 cut(s) 15, 42, 883
BseMII CTCAG 2 cut(s) 753, 1207
BseSI GKGCMC 3 cut(s) 332, 351, 1443
BseXI GCAGC 5 cut(s) 256, 736, 1070, 1095, 1364
BseYI CCCAGC 1 cut(s) 1114
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 3 cut(s) 185, 261, 1206
BsiHKAI GWGCWC 3 cut(s) 351, 370, 1157
BsiHKCI CYCGRG 2 cut(s) 363, 924
BsiSI CCGG 4 cut(s) 332, 384, 791, 878
BslFI GGGAC 3 cut(s) 151, 511, 942
BslI CCNNNNNNNGG 3 cut(s) 15, 42, 883
BsmAI GTCTC 3 cut(s) 225, 369, 1284
BsmBI CGTCTC 1 cut(s) 1284
BsmFI GGGAC 3 cut(s) 151, 511, 942
BsnI GGCC 3 cut(s) 185, 261, 1206
Bso31I GGTCTC 2 cut(s) 225, 369
BsoBI CYCGRG 2 cut(s) 363, 924
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 6 cut(s) 21, 332, 351, 370, 1157, 1443
Bsp143I GATC 4 cut(s) 290, 827, 1070, 1295
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 4 cut(s) 258, 584, 753, 1434
BspANI GGCC 3 cut(s) 185, 261, 1206
BspCNI CTCAG 2 cut(s) 752, 1206
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 1149
BspOI GCTAGC 1 cut(s) 1463
BspPI GGATC 3 cut(s) 835, 1078, 1303
BspT104I TTCGAA 1 cut(s) 310
BspTI CTTAAG 1 cut(s) 932
BspTNI GGTCTC 2 cut(s) 225, 369
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 4 cut(s) 290, 827, 1070, 1295
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 4 cut(s) 123, 132, 538, 1347
Bst4CI ACNGT 2 cut(s) 416, 521
Bst6I CTCTTC 2 cut(s) 104, 876
BstAFI CTTAAG 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 347, 736, 1461
BstDEI CTNAG 4 cut(s) 59, 739, 870, 1193
BstDSI CCRYGG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 4 cut(s) 293, 830, 1073, 1298
BstMAI GTCTC 3 cut(s) 225, 369, 1284
BstMBI GATC 4 cut(s) 290, 827, 1070, 1295
BstMWI GCNNNNNNNGC 4 cut(s) 210, 355, 584, 1469
BstNI CCWGG 4 cut(s) 123, 132, 538, 1347
BstNSI RCATGY 2 cut(s) 345, 823
BstPAI GACNNNNGTC 1 cut(s) 1488
BstSCI CCNGG 6 cut(s) 121, 130, 330, 536, 876, 1345
BstSLI GKGCMC 3 cut(s) 332, 351, 1443
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 5 cut(s) 256, 736, 1070, 1095, 1364
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 2 cut(s) 827, 1070
BstYI RGATCY 2 cut(s) 827, 1070
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 185, 261, 1206
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 1437
BtsI GCAGTG 2 cut(s) 857, 1134
BtsIMutI CAGTG 2 cut(s) 857, 1134
Cac8I GCNNGC 3 cut(s) 347, 736, 1461
CaiI CAGNNNCTG 1 cut(s) 746
CciI TCATGA 1 cut(s) 1149
CseI GACGC 2 cut(s) 264, 856
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 7 cut(s) 273, 342, 820, 904, 1030, 1150, 1258
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 4 cut(s) 59, 739, 870, 1193
DpnI GATC 4 cut(s) 292, 829, 1072, 1297
DpnII GATC 4 cut(s) 290, 827, 1070, 1295
EaeI YGGCCR 3 cut(s) 183, 259, 1204
Eam1104I CTCTTC 2 cut(s) 104, 876
EarI CTCTTC 2 cut(s) 104, 876
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 2 cut(s) 225, 369
Eco57I CTGAAG 2 cut(s) 385, 609
Eco88I CYCGRG 2 cut(s) 363, 924
EcoRI GAATTC 1 cut(s) 1252
EcoRII CCWGG 4 cut(s) 121, 130, 536, 1345
EcoT14I CCWWGG 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 1284
FaeI CATG 7 cut(s) 276, 345, 823, 907, 1033, 1153, 1261
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 3 cut(s) 151, 511, 942
FatI CATG 7 cut(s) 272, 341, 819, 903, 1029, 1149, 1257
FauNDI CATATG 1 cut(s) 1201
Fnu4HI GCNGC 8 cut(s) 245, 259, 585, 750, 753, 1059, 1084, 1353
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 8 cut(s) 245, 259, 585, 750, 753, 1059, 1084, 1353
FspBI CTAG 5 cut(s) 501, 1308, 1398, 1460, 1500
GluI GCNGC 8 cut(s) 245, 259, 585, 750, 753, 1059, 1084, 1353
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 3 cut(s) 114, 1257, 1368
HaeIII GGCC 3 cut(s) 185, 261, 1206
HapII CCGG 4 cut(s) 332, 384, 791, 878
HgaI GACGC 2 cut(s) 264, 856
Hin1II CATG 7 cut(s) 276, 345, 823, 907, 1033, 1153, 1261
HindIII AAGCTT 1 cut(s) 637
HinfI GANTC 8 cut(s) 195, 222, 307, 387, 631, 696, 950, 1489
HpaII CCGG 4 cut(s) 332, 384, 791, 878
HphI GGTGA 6 cut(s) 242, 373, 428, 1007, 1261, 1493
Hpy166II GTNNAC 2 cut(s) 322, 349
Hpy188I TCNGA 6 cut(s) 10, 374, 469, 742, 1362, 1412
Hpy188III TCNNGA 9 cut(s) 53, 103, 143, 226, 363, 969, 1150, 1289, 1318
Hpy8I GTNNAC 2 cut(s) 322, 349
Hpy99I CGWCG 2 cut(s) 258, 919
HpyAV CCTTC 6 cut(s) 278, 369, 469, 535, 1324, 1453
HpyCH4III ACNGT 2 cut(s) 416, 521
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 8 cut(s) 149, 213, 244, 349, 578, 599, 654, 1051
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 355, 584, 1469
HpyF3I CTNAG 4 cut(s) 59, 739, 870, 1193
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 7 cut(s) 276, 345, 823, 907, 1033, 1153, 1261
Kzo9I GATC 4 cut(s) 290, 827, 1070, 1295
LmnI GCTCC 2 cut(s) 1316, 1349
Lsp1109I GCAGC 5 cut(s) 256, 736, 1070, 1095, 1364
LweI GCATC 4 cut(s) 136, 565, 896, 1414
MaeI CTAG 5 cut(s) 501, 1308, 1398, 1460, 1500
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 515, 1481
MalI GATC 4 cut(s) 292, 829, 1072, 1297
MboI GATC 4 cut(s) 290, 827, 1070, 1295
MflI RGATCY 2 cut(s) 827, 1070
MhlI GDGCHC 6 cut(s) 21, 332, 351, 370, 1157, 1443
MlsI TGGCCA 2 cut(s) 185, 1206
MluNI TGGCCA 2 cut(s) 185, 1206
MlyI GAGTC 1 cut(s) 1498
Mox20I TGGCCA 2 cut(s) 185, 1206
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 2 cut(s) 185, 1206
MseI TTAA 3 cut(s) 672, 894, 933
Msp20I TGGCCA 2 cut(s) 185, 1206
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 4 cut(s) 332, 384, 791, 878
MspR9I CCNGG 6 cut(s) 123, 132, 332, 538, 878, 1347
MvaI CCWGG 4 cut(s) 123, 132, 538, 1347
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 210, 355, 584, 1469
NciI CCSGG 2 cut(s) 332, 878
NcoI CCATGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 1201
NdeII GATC 4 cut(s) 290, 827, 1070, 1295
NheI GCTAGC 1 cut(s) 1459
NlaIII CATG 7 cut(s) 276, 345, 823, 907, 1033, 1153, 1261
NmuCI GTSAC 2 cut(s) 515, 1481
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 2 cut(s) 345, 823
NspV TTCGAA 1 cut(s) 310
PagI TCATGA 1 cut(s) 1149
PciI ACATGT 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 7 cut(s) 195, 222, 307, 387, 631, 696, 950
PfoI TCCNGGA 3 cut(s) 130, 536, 876
PkrI GCNGC 8 cut(s) 246, 260, 586, 751, 754, 1060, 1085, 1354
PleI GAGTC 1 cut(s) 1497
PpsI GAGTC 1 cut(s) 1497
Ppu21I YACGTR 1 cut(s) 325
PscI ACATGT 1 cut(s) 819
PshAI GACNNNNGTC 1 cut(s) 1488
Psp6I CCWGG 4 cut(s) 121, 130, 536, 1345
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 4 cut(s) 121, 130, 536, 1345
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 2 cut(s) 827, 1070
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 3 cut(s) 672, 894, 933
SatI GCNGC 8 cut(s) 245, 259, 585, 750, 753, 1059, 1084, 1353
Sau3AI GATC 4 cut(s) 290, 827, 1070, 1295
SchI GAGTC 1 cut(s) 1498
ScrFI CCNGG 6 cut(s) 123, 132, 332, 538, 878, 1347
SduI GDGCHC 6 cut(s) 21, 332, 351, 370, 1157, 1443
SfaNI GCATC 4 cut(s) 136, 565, 896, 1414
SfuI TTCGAA 1 cut(s) 310
SmlI CTYRAG 5 cut(s) 51, 101, 932, 1318, 1486
SmoI CTYRAG 5 cut(s) 51, 101, 932, 1318, 1486
SpeI ACTAGT 1 cut(s) 1499
SsiI CCGC 4 cut(s) 258, 584, 753, 1434
SspI AATATT 1 cut(s) 661
SspMI CTAG 5 cut(s) 501, 1308, 1398, 1460, 1500
StyD4I CCNGG 6 cut(s) 121, 130, 330, 536, 876, 1345
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 416, 521
TaiI ACGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 310, 562, 1288
TauI GCSGC 3 cut(s) 261, 587, 755
TfiI GAWTC 7 cut(s) 195, 222, 307, 387, 631, 696, 950
Tru1I TTAA 3 cut(s) 672, 894, 933
Tru9I TTAA 3 cut(s) 672, 894, 933
TscAI CASTG 2 cut(s) 857, 1141
TseFI GTSAC 2 cut(s) 515, 1481
TseI GCWGC 5 cut(s) 244, 749, 1058, 1083, 1352
Tsp45I GTSAC 2 cut(s) 515, 1481
TspDTI ATGAA 8 cut(s) 541, 631, 644, 822, 1138, 1188, 1239, 1352
TspGWI ACGGA 1 cut(s) 1308
TspRI CASTG 2 cut(s) 857, 1141
Vha464I CTTAAG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 347
XapI RAATTY 3 cut(s) 115, 728, 1252
XceI RCATGY 2 cut(s) 345, 823
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 5 cut(s) 501, 1308, 1398, 1460, 1500
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.