MD03G1144800.v1.1

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0018498
Physical Location & Seq
Reverse (-)
15612370 .. 15612777
408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1144800.v1.1.491

Sequence Viewer

Length: 408 bp
ATGTTCGAGGTGGAAGAGGCAGTGGCCATGGAGTCGCAGACCATCAAGCACATGGTGGAGGACGGATGCGCCGACAATACCATTCCTTTGCCAAACGTGACGAGCGCCATCCTTGCGAAGGTCATTGAGTACTGTACAAAGCATCGTGAAGAGGACAGGGCTATTGCTACTGACAACGAGAATAATTTCAAGGAGTGGGATGCCGAGTTCATAAAGATCAACCAAAACACTCTCTATGACCTAATAATGGCGGCAAACTATCTTAACATCAAGGGCCTGCTTGACTTGACGTGTCAAATTGTGGTGGACATAATCAAGGGGAAGGCACCTGAAGAGATTCGCAAGATGTTCAACATCAAGAACGATTTCGCTCCAAAGGAAGAAGAAAAGATTCATAGGGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

4.75

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 2 - 49 5.7e-24 Skp1 family, tetramerisation domain
Skp1 PF01466 91 - 135 6.6e-22 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018498)

Species Orthologous Gene IDs
malus_domestica MD03G1144800.v1.1
pyrus_communis pycom10g10750
rosa_laevigata RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 2 cut(s) 131, 136
AfiI CCNNNNNNNGG 2 cut(s) 118, 247
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 190, 352
AjiI CACGTC 1 cut(s) 291
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AoxI GGCC 2 cut(s) 24, 274
Asp700I GAANNNNTTC 4 cut(s) 185, 336, 365, 390
AspLEI GCGC 2 cut(s) 71, 107
AspS9I GGNCC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 325
BccI CCATC 2 cut(s) 50, 116
BfaI CTAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 3 cut(s) 56, 151, 190
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 247
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 71, 108, 205
BseLI CCNNNNNNNGG 2 cut(s) 118, 247
BshFI GGCC 2 cut(s) 26, 276
BshNI GGYRCC 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 118, 247
BsnI GGCC 2 cut(s) 26, 276
Bsp1407I TGTACA 1 cut(s) 134
Bsp143I GATC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 26, 276
BspLI GGNNCC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 3 cut(s) 9, 144, 327
BstAUI TGTACA 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 3 cut(s) 71, 108, 205
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 71, 107
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 26, 276
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 291
BtsCI GGATG 3 cut(s) 71, 108, 205
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 278
CfoI GCGC 2 cut(s) 71, 107
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 130, 135
CviAII CATG 2 cut(s) 28, 52
CviJI RGCY 3 cut(s) 26, 161, 276
CviKI_1 RGCY 3 cut(s) 26, 161, 276
CviQI GTAC 2 cut(s) 130, 135
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 3 cut(s) 9, 144, 327
EarI CTCTTC 3 cut(s) 9, 144, 327
Eco130I CCWWGG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 351
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 31, 55
FaiI YATR 6 cut(s) 29, 53, 212, 237, 311, 396
FatI CATG 2 cut(s) 27, 51
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 3 cut(s) 78, 95, 212
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 406
GlaI GCGC 2 cut(s) 70, 106
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 26, 276
HhaI GCGC 2 cut(s) 71, 107
Hin1II CATG 2 cut(s) 31, 55
Hin6I GCGC 2 cut(s) 69, 105
HinP1I GCGC 2 cut(s) 69, 105
HinfI GANTC 3 cut(s) 32, 337, 391
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 146, 358
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 112, 316
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 96, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 96, 290
Hsp92II CATG 2 cut(s) 31, 55
HspAI GCGC 2 cut(s) 69, 105
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 3 cut(s) 142, 290, 342
LweI GCATC 3 cut(s) 56, 151, 190
MaeI CTAG 1 cut(s) 406
MaeII ACGT 2 cut(s) 96, 290
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 5 cut(s) 26, 161, 344, 392, 395
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 184, 297
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 10, 52, 145
Mox20I TGGCCA 1 cut(s) 26
MroXI GAANNNNTTC 4 cut(s) 185, 336, 365, 390
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 216
NlaIII CATG 2 cut(s) 31, 55
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 4 cut(s) 185, 336, 365, 390
PfeI GAWTC 2 cut(s) 337, 391
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 274
RsaI GTAC 2 cut(s) 131, 136
RsaNI GTAC 2 cut(s) 130, 135
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 1 cut(s) 41
SetI ASST 6 cut(s) 12, 99, 123, 243, 293, 331
SfaNI GCATC 3 cut(s) 56, 151, 190
Sse9I AATT 2 cut(s) 184, 297
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 99, 293
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 184, 297
TatI WGTACW 2 cut(s) 129, 134
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 337, 391
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 199, 383
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 4 cut(s) 185, 336, 365, 390
XspI CTAG 1 cut(s) 406
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.