RLG00000019611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018498
Physical Location & Seq
Forward (+)
54228181 .. 54228620
440 bp
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UTR
Exon/CDS
Intron
RLM00000019611

Sequence Viewer

Length: 363 bp
ATGAAGCTAAAGTGGTTGCGGTCTGGTGATGAGGAAGACGGTGCCGATGAATCTCAGTCCGTTGAGAGCTCTTTGCGCTCTCAATCTCGTCCTTTGAAGCTTCATCTTCAGCCTCATCACCTCGCGTCGTGGGAACGTCAGGTTGCTGGAGTTGGACGACTTGGCGATGGGTTTGCCGTTTGGATTCGAAGATCCGAGGACGAACTACTCCAACTCGTCTCCGTTTGGGAGCCGAGCGAGATGGTGAGGAAGGATGCTGCCGGAGCTGAACAAGATCATGAGGAAGTTCTCGCCGGGGGGAGAGGAGAGAGAGAGAGAGGAAAGGAAGAGAATGATTTTCTTTTTGCAATAGAAAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

4.97

Isoelectric Point (pI)

73.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018498)

Species Orthologous Gene IDs
malus_domestica MD03G1144800.v1.1
pyrus_communis pycom10g10750
rosa_laevigata RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 19
AclWI GGATC 1 cut(s) 186
AcuI CTGAAG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 4 cut(s) 7, 69, 100, 266
AluI AGCT 4 cut(s) 7, 69, 100, 266
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 3 cut(s) 38, 110, 256
AsuII TTCGAA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 161, 235
BceAI ACGGC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 223
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 43, 231
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 195, 294
BseDI CCNNGG 2 cut(s) 195, 294
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 261, 294
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 191, 274
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 43, 231
BspPI GGATC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 195, 294
BssMI GATC 2 cut(s) 191, 274
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 2 cut(s) 194, 277
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 191, 274
BstMWI GCNNNNNNNGC 2 cut(s) 75, 263
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 259
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 78
CseI GACGC 1 cut(s) 114
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 7, 69, 100, 112, 232, 266
CviKI_1 RGCY 6 cut(s) 7, 69, 100, 112, 232, 266
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 193, 276
DpnII GATC 2 cut(s) 191, 274
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 1 cut(s) 281
FaiI YATR 1 cut(s) 279
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 258
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 2 cut(s) 261, 294
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 50, 184
HpaII CCGG 2 cut(s) 261, 294
HphI GGTGA 3 cut(s) 38, 110, 256
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 263
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 191, 274
LmnI GCTCC 2 cut(s) 229, 263
LpnPI CCDG 5 cut(s) 9, 125, 132, 274, 307
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 136
MalI GATC 2 cut(s) 193, 276
MboI GATC 2 cut(s) 191, 274
MboII GAAGA 4 cut(s) 47, 98, 201, 338
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 133, 235
MnlI CCTC 8 cut(s) 25, 123, 131, 190, 240, 274, 296, 311
MspI CCGG 2 cut(s) 261, 294
MspR9I CCNGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 75, 263
NciI CCSGG 1 cut(s) 295
NdeII GATC 2 cut(s) 191, 274
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 43, 231
NmeAIII GCCGAG 1 cut(s) 258
NspV TTCGAA 1 cut(s) 187
PagI TCATGA 1 cut(s) 277
PfeI GAWTC 2 cut(s) 50, 184
PkrI GCNGC 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 43, 231
PsuI RGATCY 1 cut(s) 191
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 191, 274
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 9, 71, 102, 123, 139, 144, 268
SfaNI GCATC 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 187
SsiI CCGC 1 cut(s) 19
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 187
TfiI GAWTC 2 cut(s) 50, 184
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 17, 63, 92
TspGWI ACGGA 2 cut(s) 49, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.