Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018498

Physical Location & Seq

Genomic Coordinates Forward (+)

80997869 .. 80999291

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAGCTAAAGTGGTTGTGGTTTGGTGATGAGGAAGACGGTGCCGATGAATCTCAGGCCGTTGAGAGCTCTTTGCTCTCCCGATCTCGTCCTTTGAAGCTTCGTCTTCAGCCTCCTCACCTCGCGTCGTGGGATCGTCAGGTTGCCGGAGTTGGACGACACGGCGATGGGGTTGCCGTTTGGATTCGAAGATCCGAGGCCGAACTACTCCAGCTCGTCTCCGTTCGGACCATCAGGGATATGGTTGAGGCTCTAGAGGATCATATCGATGAGATTACTATCCCGAATGTCACTAGCATGATCTTACAAAAGGTAGTCGATTACCTTGTAATGCACGAGGAGCGGAGTACTGCTTCCTGTGTTGGCACTCTGGCTCTCATCAAATTTGACTCTGACTTTGTCAAGGTCGACAAGGACACACTCTTTGAGCTCACTAAGGTGGCAAACATTCTGAACATTAAGGGCATGAAGGATCTGATAATTGGGGATGTGCATAAGAAGAGAAGCTCCGTGTGGAGAACCGAATTGTCATTGAGGAAATCATGGCAAATTAGCGTGGTGAAGGTATGGATCAACTGTCATTTGAAGAGCGTTCTGAAAGAGCTTTCAAGGACTTTCTACGCACGCAGTATTATGAACGGAAATCTCATATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019005 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

220

Amino Acids

25.12

Weight (kDa)

8.48

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	76 - 113	1.7e-06	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018498)

Species	Orthologous Gene IDs
malus_domestica	MD03G1144800.v1.1
pyrus_communis	pycom10g10750
rosa_laevigata	RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha	Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	5 cut(s)	141, 186, 267, 480, 578
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	97, 586, 609
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	7 cut(s)	7, 69, 100, 214, 430, 507, 604
AluI	AGCT	7 cut(s)	7, 69, 100, 214, 430, 507, 604
Alw21I	GWGCWC	2 cut(s)	71, 432
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	5 cut(s)	141, 186, 267, 480, 578
AoxI	GGCC	2 cut(s)	57, 198
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	4 cut(s)	380, 407, 412, 439
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	38, 110, 571
AsuII	TTCGAA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	2 cut(s)	71, 432
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	42, 98
Bbv12I	GWGCWC	2 cut(s)	71, 432
BccI	CCATC	2 cut(s)	161, 239
BceAI	ACGGC	3 cut(s)	44, 161, 178
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	254, 294
BmcAI	AGTACT	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	42, 98
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	105, 353
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	59, 200
BshNI	GGYRCC	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	71, 432
BsiSI	CCGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	59, 200
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	71, 432
Bsp143I	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	59, 200
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	5 cut(s)	141, 186, 267, 480, 578
BspQI	GCTCTTC	1 cut(s)	581
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	41, 578
Bst6I	CTCTTC	2 cut(s)	494, 581
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	2 cut(s)	54, 435
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	7 cut(s)	86, 136, 194, 262, 303, 475, 573
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	42, 98
BstX2I	RGATCY	2 cut(s)	191, 472
BstYI	RGATCY	2 cut(s)	191, 472
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	59, 200
BsuTUI	ATCGAT	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	298, 466, 543
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	54, 435
DpnI	GATC	7 cut(s)	85, 135, 193, 261, 302, 474, 572
DpnII	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
Eam1104I	CTCTTC	2 cut(s)	494, 581
EarI	CTCTTC	2 cut(s)	494, 581
Ecl136II	GAGCTC	2 cut(s)	69, 430
Eco24I	GRGCYC	2 cut(s)	71, 432
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	2 cut(s)	69, 430
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	2 cut(s)	69, 430
EcoT38I	GRGCYC	2 cut(s)	71, 432
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	3 cut(s)	301, 469, 546
FatI	CATG	3 cut(s)	297, 465, 542
FblI	GTMKAC	1 cut(s)	408
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	2 cut(s)	71, 432
FspBI	CTAG	2 cut(s)	254, 294
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	59, 200
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	301, 469, 546
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	50, 184, 389
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	38, 110, 571
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	6 cut(s)	196, 228, 394, 453, 477, 597
Hpy188III	TCNNGA	3 cut(s)	81, 254, 283
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	463, 556
HpyCH4III	ACNGT	2 cut(s)	41, 578
HpyCH4V	TGCA	2 cut(s)	334, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	54, 435
Hsp92II	CATG	3 cut(s)	301, 469, 546
Kzo9I	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	2 cut(s)	340, 512
LpnPI	CCDG	7 cut(s)	41, 125, 160, 220, 224, 356, 370
MaeI	CTAG	2 cut(s)	254, 294
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	7 cut(s)	85, 135, 193, 261, 302, 474, 572
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
MboII	GAAGA	5 cut(s)	47, 98, 201, 511, 598
MflI	RGATCY	2 cut(s)	191, 472
MhlI	GDGCHC	2 cut(s)	71, 432
MluCI	AATT	4 cut(s)	383, 480, 524, 549
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	9 cut(s)	25, 123, 126, 131, 190, 241, 250, 331, 528
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	4 cut(s)	165, 267, 296, 437
MspI	CCGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
NlaIII	CATG	3 cut(s)	301, 469, 546
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	50, 184
PflFI	GACNNNGTC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp124BI	GAGCTC	2 cut(s)	71, 432
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	228
PsuI	RGATCY	2 cut(s)	191, 472
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	4 cut(s)	165, 267, 296, 437
SacI	GAGCTC	2 cut(s)	71, 432
SalI	GTCGAC	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	459
Sau3AI	GATC	7 cut(s)	83, 133, 191, 259, 300, 472, 570
Sau96I	GGNCC	1 cut(s)	228
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	71, 432
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	4 cut(s)	165, 267, 296, 437
Sse9I	AATT	4 cut(s)	383, 480, 524, 549
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	2 cut(s)	254, 294
SstI	GAGCTC	2 cut(s)	71, 432
TaaI	ACNGT	2 cut(s)	41, 578
TaqI	TCGA	4 cut(s)	187, 267, 318, 408
TasI	AATT	4 cut(s)	383, 480, 524, 549
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	50, 184
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	17, 63, 482, 650
TspGWI	ACGGA	3 cut(s)	211, 499, 654
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	254, 294
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.