Rh5DG189300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018498
Physical Location & Seq
Forward (+)
21011058 .. 21011300
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG189300.1

Sequence Viewer

Length: 243 bp
ATGAAGCTAAAGTGGTTGCGGTCTGGTGATGAGGAAGACGGTGCTGATGAATCTCAGGTCGTTGAGAGCTCTTTGCGCGCTCAATCTCGTCCTTTGAAGCTTCGTCTTCAGCCTCCTCACCTCGCGTCGAGGGACTATCAAGTTGCCGGAGTTGGACGACACGGCGATGGGTTTGCCGTTTGGATTCGAAGATCTGAGGCCGAACTACTCCAGCTCGTCTCTGTTCGGGCCAGCTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.88

Weight (kDa)

8.23

Isoelectric Point (pI)

75.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018498)

Species Orthologous Gene IDs
malus_domestica MD03G1144800.v1.1
pyrus_communis pycom10g10750
rosa_laevigata RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 78, 125
AciI CCGC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 5 cut(s) 7, 69, 100, 214, 234
AluI AGCT 5 cut(s) 7, 69, 100, 214, 234
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 223
AoxI GGCC 2 cut(s) 198, 228
AspLEI GCGC 2 cut(s) 78, 80
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 38, 110
AsuII TTCGAA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 42, 98
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 1 cut(s) 161
BceAI ACGGC 2 cut(s) 161, 178
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcoDI GTCTC 1 cut(s) 223
BglII AGATCT 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 42, 98
BpmI CTGGAG 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 187
BseMII CTCAG 2 cut(s) 68, 186
BsePI GCGCGC 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 78, 125
BshFI GGCC 2 cut(s) 200, 230
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 223
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 200, 230
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 200, 230
BspCNI CTCAG 2 cut(s) 67, 187
BspFNI CGCG 2 cut(s) 78, 125
BspT104I TTCGAA 1 cut(s) 187
BssHII GCGCGC 1 cut(s) 76
BssMI GATC 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 78, 232
BstDEI CTNAG 2 cut(s) 54, 195
BstFNI CGCG 2 cut(s) 78, 125
BstHHI GCGC 2 cut(s) 78, 80
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstUI CGCG 2 cut(s) 78, 125
BstV2I GAAGAC 2 cut(s) 42, 98
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 200, 230
BtgZI GCGATG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 78, 232
CfoI GCGC 2 cut(s) 78, 80
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 1 cut(s) 114
CviJI RGCY 8 cut(s) 7, 69, 100, 112, 200, 214, 230, 234
CviKI_1 RGCY 8 cut(s) 7, 69, 100, 112, 200, 214, 230, 234
DdeI CTNAG 2 cut(s) 54, 195
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 223
FaqI GGGAC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 71
GlaI GCGC 2 cut(s) 77, 79
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 200, 230
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 78, 80
Hin6I GCGC 2 cut(s) 76, 78
HinP1I GCGC 2 cut(s) 76, 78
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 50, 184
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 38, 110
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 2 cut(s) 54, 195
HspAI GCGC 2 cut(s) 76, 78
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 9, 41, 160, 222, 224
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 47, 98, 201
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 6 cut(s) 25, 123, 123, 126, 131, 190
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 147
MvnI CGCG 2 cut(s) 78, 125
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 1 cut(s) 191
NspV TTCGAA 1 cut(s) 187
PauI GCGCGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 50, 184
Psp124BI GAGCTC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 191
PteI GCGCGC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 165
SacI GAGCTC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 9, 60, 71, 102, 123, 216, 236
SfuI TTCGAA 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 165
SsiI CCGC 1 cut(s) 19
SstI GAGCTC 1 cut(s) 71
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 128, 187
TfiI GAWTC 2 cut(s) 50, 184
TspDTI ATGAA 2 cut(s) 17, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.