Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018498

Physical Location & Seq

Genomic Coordinates Forward (+)

10938016 .. 10938603

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATGAAACAGAGGTGGTGTGGGAAGGGACGTCAACGACACCGCATCAAAGAAGCAAATTGGAGCTCAGATATGCAATCTCAGATCCTGACGGATTTAAATCAGAGCTCAGATGCAATCTCAGATCTCGGCGGTAGGAACGAGGTCGAAACCACCAGAAGAGCTAGTCTCCGTTCGGGCCAGCTCCGGCTGAGAAAGGTAATGGAGAACGGAATCGACGACAGAGTTGTCGCATCCGACGGTCCTGTGTTGCCGGAGCCGAACGAGATGGTGAGGAAGGATGCTGCCGGAGCTGACCAAGATCGTGAGGATGGTTTTCTCGCCGGAGAGAGAGAGAGAGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

5.93

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018498)

Species	Orthologous Gene IDs
malus_domestica	MD03G1144800.v1.1
pyrus_communis	pycom10g10750
rosa_laevigata	RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha	Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	34
AciI	CCGC	2 cut(s)	43, 132
AclWI	GGATC	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	31
AluBI	AGCT	5 cut(s)	66, 108, 164, 184, 293
AluI	AGCT	5 cut(s)	66, 108, 164, 184, 293
Alw21I	GWGCWC	2 cut(s)	68, 110
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	178, 242
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	68, 110
Bbv12I	GWGCWC	2 cut(s)	68, 110
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	262, 305
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	178, 242
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	4 cut(s)	54, 103, 242, 271
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	99
BseGI	GGATG	3 cut(s)	233, 286, 316
BseJI	GATNNNNATC	1 cut(s)	99
BseMII	CTCAG	5 cut(s)	81, 95, 123, 135, 182
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	68, 110
BsiSI	CCGG	4 cut(s)	187, 254, 288, 324
BslFI	GGGAC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	68, 110
Bsp143I	GATC	3 cut(s)	84, 124, 301
BspACI	CCGC	2 cut(s)	43, 132
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	5 cut(s)	80, 94, 122, 134, 183
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	154
BssMI	GATC	3 cut(s)	84, 124, 301
BssNI	GRCGYC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	5 cut(s)	67, 81, 109, 121, 191
BstF5I	GGATG	3 cut(s)	233, 286, 316
BstKTI	GATC	3 cut(s)	87, 127, 304
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	84, 124, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	84, 124
BstYI	RGATCY	2 cut(s)	84, 124
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	233, 286, 316
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	178, 242
CviJI	RGCY	8 cut(s)	66, 108, 164, 180, 184, 190, 259, 293
CviKI_1	RGCY	8 cut(s)	66, 108, 164, 180, 184, 190, 259, 293
DdeI	CTNAG	5 cut(s)	67, 81, 109, 121, 191
DpnI	GATC	3 cut(s)	86, 126, 303
DpnII	GATC	3 cut(s)	84, 124, 301
DraI	TTTAAA	1 cut(s)	99
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	2 cut(s)	66, 108
Eco24I	GRGCYC	2 cut(s)	68, 110
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	2 cut(s)	66, 108
EcoICRI	GAGCTC	2 cut(s)	66, 108
EcoT38I	GRGCYC	2 cut(s)	68, 110
FaiI	YATR	1 cut(s)	74
FaqI	GGGAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	3 cut(s)	220, 293, 323
FriOI	GRGCYC	2 cut(s)	68, 110
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	4 cut(s)	187, 254, 288, 324
Hin1I	GRCGYC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	4 cut(s)	187, 254, 288, 324
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	6 cut(s)	70, 84, 105, 112, 124, 238
Hpy188III	TCNNGA	2 cut(s)	88, 305
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	2 cut(s)	221, 242
HpyAV	CCTTC	2 cut(s)	19, 271
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	76, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	5 cut(s)	67, 81, 109, 121, 191
HpySE526I	ACGT	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	84, 124, 301
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	63, 189, 256, 290
LpnPI	CCDG	8 cut(s)	101, 169, 194, 200, 258, 267, 301, 337
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	4 cut(s)	54, 103, 242, 271
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	31
MalI	GATC	3 cut(s)	86, 126, 303
MboI	GATC	3 cut(s)	84, 124, 301
MboII	GAAGA	1 cut(s)	171
MflI	RGATCY	2 cut(s)	84, 124
MhlI	GDGCHC	2 cut(s)	68, 110
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	6, 136, 267, 301
MseI	TTAA	1 cut(s)	98
MspI	CCGG	4 cut(s)	187, 254, 288, 324
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	3 cut(s)	84, 124, 301
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	286
Psp124BI	GAGCTC	2 cut(s)	68, 110
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	178, 242
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	84, 124
SacI	GAGCTC	2 cut(s)	68, 110
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	84, 124, 301
Sau96I	GGNCC	2 cut(s)	178, 242
SduI	GDGCHC	2 cut(s)	68, 110
SetI	ASST	9 cut(s)	17, 34, 68, 110, 147, 166, 186, 201, 295
SfaNI	GCATC	4 cut(s)	54, 103, 242, 271
SinI	GGWCC	1 cut(s)	242
SmiI	ATTTAAAT	1 cut(s)	99
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	43, 132
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	2 cut(s)	68, 110
SwaI	ATTTAAAT	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	147, 216
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	3 cut(s)	107, 161, 225
VpaK11BI	GGWCC	1 cut(s)	242
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.