RLG00000007686

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018498
Physical Location & Seq
Forward (+)
19882489 .. 19882939
451 bp
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UTR
Exon/CDS
Intron
RLM00000007686

Sequence Viewer

Length: 366 bp
ATGAAACAGAGGTGGTGTGGGAAGGGACGTCAACAACACCGCATCAAAGAAGCAAATCAGAGCTCAGATATGCAATCTCAGATCCTGATGGATTCAAATAGGAGCTCAGATGCAATCTCAGATCTCGGCAGTAGGAACAAGGTCGAAGTCGCCAGAAGAGACGGTGCCGATGAATCTCAGGTAGTTGAGAGCTCTTTGCGCTCTCGATCTCGTCCTTTGAAGCTTCGTCTTCAGCCTCCTCACCTCGCGTCGAGGGACTATCAAGTTACCGGAGTTGGACGACGCGGCGATGGGTTTGCCGTTTGGATTCGAAGATCTGAGGCCAAACTACTCCAGCTCATCTCAGTTCGAGCCAACTCCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.7

Weight (kDa)

10.79

Isoelectric Point (pI)

82.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018498)

Species Orthologous Gene IDs
malus_domestica MD03G1144800.v1.1
pyrus_communis pycom10g10750
rosa_laevigata RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 2 cut(s) 248, 285
AciI CCGC 2 cut(s) 40, 285
AclWI GGATC 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 28
AgsI TTSAA 2 cut(s) 96, 220
AluBI AGCT 5 cut(s) 63, 105, 192, 223, 337
AluI AGCT 5 cut(s) 63, 105, 192, 223, 337
Alw21I GWGCWC 3 cut(s) 65, 107, 194
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 3 cut(s) 65, 107, 194
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 3 cut(s) 65, 107, 194
BccI CCATC 2 cut(s) 82, 284
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BcoDI GTCTC 1 cut(s) 153
BglII AGATCT 2 cut(s) 121, 314
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 51, 100
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 269
BseMII CTCAG 7 cut(s) 78, 92, 120, 132, 191, 309, 357
BseRI GAGGAG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 248, 285
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 3 cut(s) 65, 107, 194
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 2 cut(s) 39, 269
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 2 cut(s) 39, 269
BsnI GGCC 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 3 cut(s) 65, 107, 194
Bsp143I GATC 4 cut(s) 81, 121, 206, 314
BspACI CCGC 2 cut(s) 40, 285
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 7 cut(s) 77, 91, 119, 131, 190, 310, 356
BspFNI CGCG 2 cut(s) 248, 285
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 164
BssMI GATC 4 cut(s) 81, 121, 206, 314
BssNI GRCGYC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 310
BstDEI CTNAG 7 cut(s) 64, 78, 106, 118, 177, 318, 343
BstFNI CGCG 2 cut(s) 248, 285
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 4 cut(s) 84, 124, 209, 317
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 4 cut(s) 81, 121, 206, 314
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstUI CGCG 2 cut(s) 248, 285
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 3 cut(s) 81, 121, 314
BstYI RGATCY 3 cut(s) 81, 121, 314
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 201
CseI GACGC 2 cut(s) 237, 291
CviJI RGCY 8 cut(s) 63, 105, 192, 223, 235, 323, 337, 353
CviKI_1 RGCY 8 cut(s) 63, 105, 192, 223, 235, 323, 337, 353
DdeI CTNAG 7 cut(s) 64, 78, 106, 118, 177, 318, 343
DpnI GATC 4 cut(s) 83, 123, 208, 316
DpnII GATC 4 cut(s) 81, 121, 206, 314
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 3 cut(s) 63, 105, 192
Eco24I GRGCYC 3 cut(s) 65, 107, 194
Eco53kI GAGCTC 3 cut(s) 63, 105, 192
Eco57I CTGAAG 1 cut(s) 215
EcoICRI GAGCTC 3 cut(s) 63, 105, 192
EcoT38I GRGCYC 3 cut(s) 65, 107, 194
Esp3I CGTCTC 1 cut(s) 153
FaiI YATR 1 cut(s) 71
FaqI GGGAC 2 cut(s) 39, 269
Fnu4HI GCNGC 1 cut(s) 286
FriOI GRGCYC 3 cut(s) 65, 107, 194
Fsp4HI GCNGC 1 cut(s) 286
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 270
HgaI GACGC 2 cut(s) 237, 291
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 28
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 92, 173, 307
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 7 cut(s) 60, 67, 81, 109, 121, 319, 361
Hpy188III TCNNGA 2 cut(s) 85, 204
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 2 cut(s) 253, 285
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 73, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 7 cut(s) 64, 78, 106, 118, 177, 318, 343
HpySE526I ACGT 1 cut(s) 28
Hsp92I GRCGYC 1 cut(s) 28
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 4 cut(s) 81, 121, 206, 314
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 98, 164, 166, 283, 347
LweI GCATC 2 cut(s) 51, 100
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 83, 123, 208, 316
MboI GATC 4 cut(s) 81, 121, 206, 314
MboII GAAGA 3 cut(s) 168, 221, 324
MflI RGATCY 3 cut(s) 81, 121, 314
MhlI GDGCHC 3 cut(s) 65, 107, 194
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 6 cut(s) 3, 246, 246, 249, 254, 313
MspI CCGG 1 cut(s) 270
MvnI CGCG 2 cut(s) 248, 285
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 4 cut(s) 81, 121, 206, 314
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 105
NspV TTCGAA 1 cut(s) 310
PfeI GAWTC 3 cut(s) 92, 173, 307
PkrI GCNGC 1 cut(s) 287
Psp124BI GAGCTC 3 cut(s) 65, 107, 194
PspN4I GGNNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 81, 121, 314
SacI GAGCTC 3 cut(s) 65, 107, 194
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 4 cut(s) 81, 121, 206, 314
SduI GDGCHC 3 cut(s) 65, 107, 194
SfaNI GCATC 2 cut(s) 51, 100
SfuI TTCGAA 1 cut(s) 310
SsiI CCGC 2 cut(s) 40, 285
SstI GAGCTC 3 cut(s) 65, 107, 194
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 31
TaqI TCGA 5 cut(s) 144, 205, 251, 310, 349
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 3 cut(s) 92, 173, 307
TspDTI ATGAA 2 cut(s) 17, 186
ZraI GACGTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.