MD03G1195200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0009402
Physical Location & Seq
Reverse (-)
26730390 .. 26731379
990 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1195200.v1.1.491

Sequence Viewer

Length: 183 bp
ATGCAATGGATATCGTACGTGACGCAGAGCGGCAGATTGATGCAGGTTATGATGACCAAAATCCACCCCGTTGGTAAAGTCTACCACTTGAAGGCGAAACGCCAAATGGCTGAGAACATCGGCCAGGTTGCCAAGTTTAAGCAGCGGTACGAGAAGCAGATTGCCCCGAAAGACGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.08

Weight (kDa)

10.07

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 30, 145
AcoI YGGCCR 1 cut(s) 121
AfaI GTAC 2 cut(s) 17, 149
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 123
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 2 cut(s) 31, 143
BlsI GCNGC 2 cut(s) 32, 144
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 123
BsiWI CGTACG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 1 cut(s) 123
BspACI CCGC 2 cut(s) 30, 145
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 111
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 71
BsuRI GGCC 1 cut(s) 123
BveI ACCTGC 1 cut(s) 34
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 16, 148
CviJI RGCY 3 cut(s) 110, 123, 178
CviKI_1 RGCY 3 cut(s) 110, 123, 178
CviQI GTAC 2 cut(s) 16, 148
DdeI CTNAG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 121
Eco32I GATATC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 12
FaiI YATR 1 cut(s) 50
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 31, 143
Fsp4HI GCNGC 2 cut(s) 31, 143
GluI GCNGC 2 cut(s) 31, 143
HaeIII GGCC 1 cut(s) 123
HgaI GACGC 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 4, 43
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 18
LpnPI CCDG 3 cut(s) 29, 110, 137
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 19
MbiI CCGCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 19
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 2 cut(s) 32, 144
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspLI CGTACG 1 cut(s) 15
RsaI GTAC 2 cut(s) 17, 149
RsaNI GTAC 2 cut(s) 16, 148
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 31, 143
ScrFI CCNGG 1 cut(s) 125
SetI ASST 3 cut(s) 21, 48, 129
SfaNI GCATC 1 cut(s) 30
SgeI CNNG 9 cut(s) 31, 56, 80, 100, 136, 137, 145, 163, 178
SsiI CCGC 2 cut(s) 30, 145
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 21
TauI GCSGC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.