Rw5G025930

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
37164791 .. 37165845
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025930.1

Sequence Viewer

Length: 210 bp
ATGAAGAAAGGATTACACCCTCAGATGCAATGGGTATCCTATGTGACACAGAGCGGGAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGCAAAGTCTACCACTTGAAGGCCAAGCGCCAAATGGCTGAGAACCTTGGGCAGGTTGCTAAGTTCAGGCAACGTTATGAGAAGGCGGCTCCTACTCGGAAAGATGAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.15

Weight (kDa)

10.45

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 105
AciI CCGC 2 cut(s) 54, 182
AclI AACGTT 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 115, 148
AgsI TTSAA 1 cut(s) 115
AoxI GGCC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 2 cut(s) 15, 54
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 148
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 115, 148
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 35, 126
BshFI GGCC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 115, 148
BsnI GGCC 1 cut(s) 119
BspACI CCGC 2 cut(s) 54, 182
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 34, 127
BspLI GGNNCC 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 21, 135, 156
BstENI CCTNNNNNAGG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 119
BveI ACCTGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 126
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 119, 134, 185
CviKI_1 RGCY 3 cut(s) 119, 134, 185
DdeI CTNAG 3 cut(s) 21, 135, 156
Eco130I CCWWGG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 95
FaiI YATR 4 cut(s) 42, 74, 93, 174
FatI CATG 1 cut(s) 91
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 24, 195
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 109, 172
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 69, 169
HpyCH4V TGCA 2 cut(s) 28, 67
HpyF3I CTNAG 3 cut(s) 21, 135, 156
HpySE526I ACGT 2 cut(s) 69, 169
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 134, 148
LweI GCATC 2 cut(s) 15, 54
MaeII ACGT 2 cut(s) 69, 169
MaeIII GTNAC 1 cut(s) 43
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 1 cut(s) 16
MnlI CCTC 1 cut(s) 30
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 186
SatI GCNGC 1 cut(s) 183
SetI ASST 4 cut(s) 72, 144, 153, 172
SfaNI GCATC 2 cut(s) 15, 54
SsiI CCGC 2 cut(s) 54, 182
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 72, 172
TauI GCSGC 1 cut(s) 185
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.