Rroxscaffold_1G00039550

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
57193676 .. 57194833
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039550.1

Sequence Viewer

Length: 210 bp
ATGAAGAAAGGATTGCACCCTCAGATGCAATGGGTATCCTATGTGACACAGAGTGGGAGATTGATGCACGTTATGATGACCAAGATACACCATGTCGGTAAAGTCTATCACTTGAAGGCGAAGCGTCAAATGGCTGAGAACCTTGGGCAGGTTGCTAAGTTCAGGCAACGTTATGAGAAGGCGGCTCCTACTCGGAAAGATGAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.15

Weight (kDa)

10.45

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AciI CCGC 1 cut(s) 182
AclI AACGTT 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 115
BciVI GTATCC 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 2 cut(s) 15, 54
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 35, 126
BslI CCNNNNNNNGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 34, 127
BspLI GGNNCC 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 21, 135, 156
BstENI CCTNNNNNAGG 1 cut(s) 146
BsuI GTATCC 1 cut(s) 46
BveI ACCTGC 1 cut(s) 139
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 92
CviJI RGCY 2 cut(s) 134, 185
CviKI_1 RGCY 2 cut(s) 134, 185
DdeI CTNAG 3 cut(s) 21, 135, 156
DraIII CACNNNGTG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 95
FaiI YATR 4 cut(s) 42, 74, 93, 174
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HgaI GACGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 24, 195
HpyAV CCTTC 2 cut(s) 109, 172
HpyCH4IV ACGT 2 cut(s) 69, 169
HpyCH4V TGCA 3 cut(s) 16, 28, 67
HpyF3I CTNAG 3 cut(s) 21, 135, 156
HpySE526I ACGT 2 cut(s) 69, 169
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 134, 148
LweI GCATC 2 cut(s) 15, 54
MaeII ACGT 2 cut(s) 69, 169
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 1 cut(s) 16
MnlI CCTC 1 cut(s) 30
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 186
SatI GCNGC 1 cut(s) 183
SetI ASST 5 cut(s) 72, 144, 153, 172, 208
SfaNI GCATC 2 cut(s) 15, 54
SgeI CNNG 8 cut(s) 80, 94, 104, 124, 155, 161, 175, 204
SsiI CCGC 1 cut(s) 182
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 2 cut(s) 72, 172
TauI GCSGC 1 cut(s) 185
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.