zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54630 |
| fragaria_vesca | FvH4_3g21630 FvH4_3g21630 |
| malus_domestica | MD03G1214000.v1.1 MD11G1229000.v1.1 |
| prunus_persica | Prupe.4G200600_v2.0.a1 Prupe.4G200600_v2.0.a1 |
| pyrus_communis | pycom11g20330 |
| rosa_chinensis | RchiOBHm_Chr5g0037081 |
| rosa_laevigata | RLG00000033750 |
| rosa_multiflora | Rmu_ssc0000260.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00043870 |
| rosa_rugosa | Rorug05G0160300 |
| rosa_samantha | Rh5AG252400 Rh5BG254200 Rh5CG286800 Rh5DG262700 |
| rosa_wichuraiana | Rw5G023290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 429, 944 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 499 |
| AccII | CGCG | 1 cut(s) | 841 |
| AciI | CCGC | 4 cut(s) | 357, 567, 789, 793 |
| AclWI | GGATC | 4 cut(s) | 62, 135, 213, 1028 |
| AcoI | YGGCCR | 1 cut(s) | 790 |
| AcsI | RAATTY | 1 cut(s) | 607 |
| AcuI | CTGAAG | 2 cut(s) | 44, 696 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 422, 499 |
| AgsI | TTSAA | 6 cut(s) | 384, 451, 848, 1106, 1115, 1271 |
| AjnI | CCWGG | 4 cut(s) | 318, 406, 415, 421 |
| AleI | CACNNNNGTG | 2 cut(s) | 642, 950 |
| AluBI | AGCT | 9 cut(s) | 289, 680, 712, 886, 928, 1054, 1100, 1276, 1298 |
| AluI | AGCT | 9 cut(s) | 289, 680, 712, 886, 928, 1054, 1100, 1276, 1298 |
| Alw21I | GWGCWC | 7 cut(s) | 95, 137, 714, 810, 930, 1056, 1300 |
| Alw26I | GTCTC | 1 cut(s) | 968 |
| AlwI | GGATC | 4 cut(s) | 62, 135, 213, 1028 |
| Ama87I | CYCGRG | 1 cut(s) | 982 |
| AoxI | GGCC | 5 cut(s) | 194, 464, 790, 954, 967 |
| ApeKI | GCWGC | 5 cut(s) | 210, 354, 671, 886, 1008 |
| ApoI | RAATTY | 1 cut(s) | 607 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1110, 1200 |
| AspA2I | CCTAGG | 1 cut(s) | 902 |
| AspLEI | GCGC | 1 cut(s) | 841 |
| AspS9I | GGNCC | 1 cut(s) | 419 |
| AsuHPI | GGTGA | 4 cut(s) | 289, 674, 734, 877 |
| AvaI | CYCGRG | 1 cut(s) | 982 |
| AvaII | GGWCC | 1 cut(s) | 419 |
| AvrII | CCTAGG | 1 cut(s) | 902 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BanI | GGYRCC | 2 cut(s) | 429, 944 |
| BanII | GRGCYC | 4 cut(s) | 714, 930, 1056, 1300 |
| BauI | CACGAG | 1 cut(s) | 713 |
| BbsI | GAAGAC | 1 cut(s) | 875 |
| Bbv12I | GWGCWC | 7 cut(s) | 95, 137, 714, 810, 930, 1056, 1300 |
| BbvI | GCAGC | 5 cut(s) | 222, 366, 658, 873, 1020 |
| BccI | CCATC | 5 cut(s) | 61, 463, 693, 856, 911 |
| BceAI | ACGGC | 1 cut(s) | 631 |
| BciT130I | CCWGG | 4 cut(s) | 320, 408, 417, 423 |
| BcoDI | GTCTC | 1 cut(s) | 968 |
| BfaI | CTAG | 5 cut(s) | 105, 483, 836, 903, 1293 |
| BfmI | CTRYAG | 1 cut(s) | 507 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 975 |
| BisI | GCNGC | 7 cut(s) | 211, 355, 672, 790, 793, 887, 1009 |
| BlnI | CCTAGG | 1 cut(s) | 902 |
| BlsI | GCNGC | 7 cut(s) | 212, 356, 673, 791, 794, 888, 1010 |
| Bme1390I | CCNGG | 4 cut(s) | 320, 408, 417, 423 |
| Bme18I | GGWCC | 1 cut(s) | 419 |
| BmeT110I | CYCGRG | 1 cut(s) | 982 |
| BmgT120I | GGNCC | 1 cut(s) | 419 |
| BmiI | GGNNCC | 3 cut(s) | 431, 946, 979 |
| BmrFI | CCNGG | 4 cut(s) | 320, 408, 417, 423 |
| BmrI | ACTGGG | 1 cut(s) | 1224 |
| BmsI | GCATC | 2 cut(s) | 658, 1120 |
| BmuI | ACTGGG | 1 cut(s) | 1224 |
| BpiI | GAAGAC | 1 cut(s) | 875 |
| BpmI | CTGGAG | 1 cut(s) | 576 |
| BpuEI | CTTGAG | 5 cut(s) | 121, 140, 262, 952, 1040 |
| BsaAI | YACGTR | 1 cut(s) | 1028 |
| BsaJI | CCNNGG | 4 cut(s) | 71, 307, 902, 951 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 422, 499 |
| Bse1I | ACTGG | 1 cut(s) | 1219 |
| Bse3DI | GCAATG | 1 cut(s) | 909 |
| BseBI | CCWGG | 4 cut(s) | 320, 408, 417, 423 |
| BseDI | CCNNGG | 4 cut(s) | 71, 307, 902, 951 |
| BseGI | GGATG | 2 cut(s) | 166, 673 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 422, 499 |
| BseMI | GCAATG | 1 cut(s) | 909 |
| BseMII | CTCAG | 2 cut(s) | 80, 699 |
| BseNI | ACTGG | 1 cut(s) | 1219 |
| BseRI | GAGGAG | 3 cut(s) | 132, 468, 970 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseX3I | CGGCCG | 1 cut(s) | 790 |
| BseXI | GCAGC | 5 cut(s) | 222, 366, 658, 873, 1020 |
| BseYI | CCCAGC | 1 cut(s) | 1172 |
| BsgI | GTGCAG | 1 cut(s) | 1180 |
| Bsh1236I | CGCG | 1 cut(s) | 841 |
| Bsh1285I | CGRYCG | 1 cut(s) | 793 |
| BshFI | GGCC | 5 cut(s) | 196, 466, 792, 956, 969 |
| BshNI | GGYRCC | 2 cut(s) | 429, 944 |
| BsiEI | CGRYCG | 1 cut(s) | 793 |
| BsiHKAI | GWGCWC | 7 cut(s) | 95, 137, 714, 810, 930, 1056, 1300 |
| BsiHKCI | CYCGRG | 1 cut(s) | 982 |
| BsiSI | CCGG | 1 cut(s) | 757 |
| BslFI | GGGAC | 1 cut(s) | 1266 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 422, 499 |
| BsmAI | GTCTC | 1 cut(s) | 968 |
| BsmFI | GGGAC | 1 cut(s) | 1266 |
| BsnI | GGCC | 5 cut(s) | 196, 466, 792, 956, 969 |
| BsoBI | CYCGRG | 1 cut(s) | 982 |
| Bsp1286I | GDGCHC | 8 cut(s) | 95, 137, 432, 714, 810, 930, 1056, 1300 |
| Bsp143I | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| BspACI | CCGC | 4 cut(s) | 357, 567, 789, 793 |
| BspANI | GGCC | 5 cut(s) | 196, 466, 792, 956, 969 |
| BspCNI | CTCAG | 2 cut(s) | 81, 700 |
| BspFNI | CGCG | 1 cut(s) | 841 |
| BspHI | TCATGA | 1 cut(s) | 64 |
| BspLI | GGNNCC | 3 cut(s) | 431, 946, 979 |
| BspMAI | CTGCAG | 1 cut(s) | 511 |
| BspPI | GGATC | 4 cut(s) | 62, 135, 213, 1028 |
| BspQI | GCTCTTC | 3 cut(s) | 625, 1090, 1266 |
| BspT107I | GGYRCC | 2 cut(s) | 429, 944 |
| BsrDI | GCAATG | 1 cut(s) | 909 |
| BsrI | ACTGG | 1 cut(s) | 1219 |
| BssECI | CCNNGG | 4 cut(s) | 71, 307, 902, 951 |
| BssMI | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| BssSI | CACGAG | 1 cut(s) | 713 |
| BssT1I | CCWWGG | 3 cut(s) | 71, 307, 902 |
| Bst2BI | CACGAG | 1 cut(s) | 713 |
| Bst2UI | CCWGG | 4 cut(s) | 320, 408, 417, 423 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 952 |
| Bst6I | CTCTTC | 5 cut(s) | 39, 625, 843, 1090, 1266 |
| BstBAI | YACGTR | 1 cut(s) | 1028 |
| BstC8I | GCNNGC | 5 cut(s) | 532, 565, 880, 884, 958 |
| BstDEI | CTNAG | 3 cut(s) | 89, 708, 1139 |
| BstDSI | CCRYGG | 1 cut(s) | 951 |
| BstF5I | GGATG | 2 cut(s) | 166, 673 |
| BstFNI | CGCG | 1 cut(s) | 841 |
| BstHHI | GCGC | 1 cut(s) | 841 |
| BstKTI | GATC | 5 cut(s) | 70, 128, 143, 221, 1023 |
| BstMAI | GTCTC | 1 cut(s) | 968 |
| BstMBI | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| BstMCI | CGRYCG | 1 cut(s) | 793 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 363, 677, 895, 966, 975, 984, 1106, 1282 |
| BstNI | CCWGG | 4 cut(s) | 320, 408, 417, 423 |
| BstNSI | RCATGY | 2 cut(s) | 701, 826 |
| BstSCI | CCNGG | 4 cut(s) | 318, 406, 415, 421 |
| BstSFI | CTRYAG | 1 cut(s) | 507 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstSNI | TACGTA | 1 cut(s) | 1028 |
| BstUI | CGCG | 1 cut(s) | 841 |
| BstV1I | GCAGC | 5 cut(s) | 222, 366, 658, 873, 1020 |
| BstV2I | GAAGAC | 1 cut(s) | 875 |
| BstX2I | RGATCY | 2 cut(s) | 140, 218 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 12, 644 |
| BstYI | RGATCY | 2 cut(s) | 140, 218 |
| BstZI | CGGCCG | 1 cut(s) | 790 |
| BsuRI | GGCC | 5 cut(s) | 196, 466, 792, 956, 969 |
| BtgI | CCRYGG | 1 cut(s) | 951 |
| BtsCI | GGATG | 2 cut(s) | 166, 673 |
| BtsI | GCAGTG | 4 cut(s) | 37, 238, 373, 784 |
| BtsIMutI | CAGTG | 5 cut(s) | 15, 37, 238, 373, 784 |
| Cac8I | GCNNGC | 5 cut(s) | 532, 565, 880, 884, 958 |
| CciI | TCATGA | 1 cut(s) | 64 |
| CciNI | GCGGCCGC | 1 cut(s) | 790 |
| CfoI | GCGC | 1 cut(s) | 841 |
| Cfr13I | GGNCC | 1 cut(s) | 419 |
| CsiI | ACCWGGT | 1 cut(s) | 415 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 289, 292, 324, 327 |
| CviAII | CATG | 4 cut(s) | 65, 257, 698, 823 |
| DdeI | CTNAG | 3 cut(s) | 89, 708, 1139 |
| DpnI | GATC | 5 cut(s) | 69, 127, 142, 220, 1022 |
| DpnII | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| EaeI | YGGCCR | 1 cut(s) | 790 |
| EagI | CGGCCG | 1 cut(s) | 790 |
| Eam1104I | CTCTTC | 5 cut(s) | 39, 625, 843, 1090, 1266 |
| EarI | CTCTTC | 5 cut(s) | 39, 625, 843, 1090, 1266 |
| EciI | GGCGGA | 1 cut(s) | 582 |
| Ecl136II | GAGCTC | 4 cut(s) | 712, 928, 1054, 1298 |
| EclXI | CGGCCG | 1 cut(s) | 790 |
| Eco105I | TACGTA | 1 cut(s) | 1028 |
| Eco130I | CCWWGG | 3 cut(s) | 71, 307, 902 |
| Eco147I | AGGCCT | 1 cut(s) | 466 |
| Eco24I | GRGCYC | 4 cut(s) | 714, 930, 1056, 1300 |
| Eco47I | GGWCC | 1 cut(s) | 419 |
| Eco52I | CGGCCG | 1 cut(s) | 790 |
| Eco53kI | GAGCTC | 4 cut(s) | 712, 928, 1054, 1298 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 696 |
| Eco88I | CYCGRG | 1 cut(s) | 982 |
| EcoICRI | GAGCTC | 4 cut(s) | 712, 928, 1054, 1298 |
| EcoRII | CCWGG | 4 cut(s) | 318, 406, 415, 421 |
| EcoT14I | CCWWGG | 3 cut(s) | 71, 307, 902 |
| EcoT38I | GRGCYC | 4 cut(s) | 714, 930, 1056, 1300 |
| ErhI | CCWWGG | 3 cut(s) | 71, 307, 902 |
| FaeI | CATG | 4 cut(s) | 68, 260, 701, 826 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1132, 1164 |
| FaqI | GGGAC | 1 cut(s) | 1266 |
| FatI | CATG | 4 cut(s) | 64, 256, 697, 822 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 7 cut(s) | 211, 355, 672, 790, 793, 887, 1009 |
| FokI | GGATG | 2 cut(s) | 173, 680 |
| FriOI | GRGCYC | 4 cut(s) | 714, 930, 1056, 1300 |
| Fsp4HI | GCNGC | 7 cut(s) | 211, 355, 672, 790, 793, 887, 1009 |
| FspBI | CTAG | 5 cut(s) | 105, 483, 836, 903, 1293 |
| GlaI | GCGC | 1 cut(s) | 840 |
| GluI | GCNGC | 7 cut(s) | 211, 355, 672, 790, 793, 887, 1009 |
| GsaI | CCCAGC | 1 cut(s) | 1176 |
| GsuI | CTGGAG | 1 cut(s) | 576 |
| HaeIII | GGCC | 5 cut(s) | 196, 466, 792, 956, 969 |
| HapII | CCGG | 1 cut(s) | 757 |
| HhaI | GCGC | 1 cut(s) | 841 |
| Hin1II | CATG | 4 cut(s) | 68, 260, 701, 826 |
| Hin6I | GCGC | 1 cut(s) | 839 |
| HinP1I | GCGC | 1 cut(s) | 839 |
| HinfI | GANTC | 3 cut(s) | 166, 725, 1232 |
| HpaII | CCGG | 1 cut(s) | 757 |
| HphI | GGTGA | 4 cut(s) | 289, 674, 734, 877 |
| Hpy166II | GTNNAC | 1 cut(s) | 817 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 49, 58, 778 |
| Hpy188III | TCNNGA | 8 cut(s) | 65, 100, 138, 555, 732, 857, 931, 1205 |
| Hpy8I | GTNNAC | 1 cut(s) | 817 |
| HpyAV | CCTTC | 6 cut(s) | 477, 515, 713, 1055, 1138, 1313 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 952 |
| HpyCH4IV | ACGT | 1 cut(s) | 1027 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 363, 677, 895, 966, 975, 984, 1106, 1282 |
| HpyF3I | CTNAG | 3 cut(s) | 89, 708, 1139 |
| HpySE526I | ACGT | 1 cut(s) | 1027 |
| Hsp92II | CATG | 4 cut(s) | 68, 260, 701, 826 |
| HspAI | GCGC | 1 cut(s) | 839 |
| Kzo9I | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| LguI | GCTCTTC | 3 cut(s) | 625, 1090, 1266 |
| LmnI | GCTCC | 2 cut(s) | 983, 1051 |
| Lsp1109I | GCAGC | 5 cut(s) | 222, 366, 658, 873, 1020 |
| LweI | GCATC | 2 cut(s) | 658, 1120 |
| MabI | ACCWGGT | 1 cut(s) | 415 |
| MaeI | CTAG | 5 cut(s) | 105, 483, 836, 903, 1293 |
| MaeII | ACGT | 1 cut(s) | 1027 |
| MaeIII | GTNAC | 3 cut(s) | 703, 722, 1028 |
| MalI | GATC | 5 cut(s) | 69, 127, 142, 220, 1022 |
| MboI | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| MboII | GAAGA | 9 cut(s) | 26, 37, 135, 612, 860, 880, 1107, 1139, 1283 |
| MflI | RGATCY | 2 cut(s) | 140, 218 |
| MhlI | GDGCHC | 8 cut(s) | 95, 137, 432, 714, 810, 930, 1056, 1300 |
| MluCI | AATT | 7 cut(s) | 205, 264, 570, 607, 627, 1110, 1209 |
| MlyI | GAGTC | 1 cut(s) | 719 |
| MnlI | CCTC | 9 cut(s) | 110, 113, 174, 481, 489, 551, 927, 991, 1117 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1110, 1200 |
| MseI | TTAA | 3 cut(s) | 461, 537, 770 |
| MslI | CAYNNNNRTG | 2 cut(s) | 642, 950 |
| MspA1I | CMGCKG | 1 cut(s) | 357 |
| MspI | CCGG | 1 cut(s) | 757 |
| MspR9I | CCNGG | 4 cut(s) | 320, 408, 417, 423 |
| MvaI | CCWGG | 4 cut(s) | 320, 408, 417, 423 |
| MvnI | CGCG | 1 cut(s) | 841 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 363, 677, 895, 966, 975, 984, 1106, 1282 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| NlaIII | CATG | 4 cut(s) | 68, 260, 701, 826 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 946, 979 |
| NmeAIII | GCCGAG | 1 cut(s) | 945 |
| NmuCI | GTSAC | 1 cut(s) | 722 |
| NotI | GCGGCCGC | 1 cut(s) | 790 |
| NspI | RCATGY | 2 cut(s) | 701, 826 |
| OliI | CACNNNNGTG | 2 cut(s) | 642, 950 |
| PaeR7I | CTCGAG | 1 cut(s) | 982 |
| PagI | TCATGA | 1 cut(s) | 64 |
| PceI | AGGCCT | 1 cut(s) | 466 |
| PciSI | GCTCTTC | 3 cut(s) | 625, 1090, 1266 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1110, 1200 |
| PfeI | GAWTC | 2 cut(s) | 166, 1232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 499 |
| PfoI | TCCNGGA | 1 cut(s) | 318 |
| PkrI | GCNGC | 7 cut(s) | 212, 356, 673, 791, 794, 888, 1010 |
| PleI | GAGTC | 1 cut(s) | 719 |
| PpsI | GAGTC | 1 cut(s) | 719 |
| Ppu21I | YACGTR | 1 cut(s) | 1028 |
| Psp124BI | GAGCTC | 4 cut(s) | 714, 930, 1056, 1300 |
| Psp6I | CCWGG | 4 cut(s) | 318, 406, 415, 421 |
| PspFI | CCCAGC | 1 cut(s) | 1172 |
| PspGI | CCWGG | 4 cut(s) | 318, 406, 415, 421 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 946, 979 |
| PspPI | GGNCC | 1 cut(s) | 419 |
| PspXI | VCTCGAGB | 1 cut(s) | 982 |
| PstI | CTGCAG | 1 cut(s) | 511 |
| PsuI | RGATCY | 2 cut(s) | 140, 218 |
| RseI | CAYNNNNRTG | 2 cut(s) | 642, 950 |
| SacI | GAGCTC | 4 cut(s) | 714, 930, 1056, 1300 |
| SapI | GCTCTTC | 3 cut(s) | 625, 1090, 1266 |
| SaqAI | TTAA | 3 cut(s) | 461, 537, 770 |
| SatI | GCNGC | 7 cut(s) | 211, 355, 672, 790, 793, 887, 1009 |
| Sau3AI | GATC | 5 cut(s) | 67, 125, 140, 218, 1020 |
| Sau96I | GGNCC | 1 cut(s) | 419 |
| SchI | GAGTC | 1 cut(s) | 719 |
| ScrFI | CCNGG | 4 cut(s) | 320, 408, 417, 423 |
| SduI | GDGCHC | 8 cut(s) | 95, 137, 432, 714, 810, 930, 1056, 1300 |
| SexAI | ACCWGGT | 1 cut(s) | 415 |
| SfaNI | GCATC | 2 cut(s) | 658, 1120 |
| SfcI | CTRYAG | 1 cut(s) | 507 |
| Sfr274I | CTCGAG | 1 cut(s) | 982 |
| SinI | GGWCC | 1 cut(s) | 419 |
| SlaI | CTCGAG | 1 cut(s) | 982 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 642, 950 |
| SmlI | CTYRAG | 6 cut(s) | 136, 155, 277, 931, 982, 1055 |
| SmoI | CTYRAG | 6 cut(s) | 136, 155, 277, 931, 982, 1055 |
| SnaBI | TACGTA | 1 cut(s) | 1028 |
| Sse9I | AATT | 7 cut(s) | 205, 264, 570, 607, 627, 1110, 1209 |
| SseBI | AGGCCT | 1 cut(s) | 466 |
| SsiI | CCGC | 4 cut(s) | 357, 567, 789, 793 |
| SspI | AATATT | 2 cut(s) | 1119, 1201 |
| SspMI | CTAG | 5 cut(s) | 105, 483, 836, 903, 1293 |
| SstI | GAGCTC | 4 cut(s) | 714, 930, 1056, 1300 |
| StuI | AGGCCT | 1 cut(s) | 466 |
| StyD4I | CCNGG | 4 cut(s) | 318, 406, 415, 421 |
| StyI | CCWWGG | 3 cut(s) | 71, 307, 902 |
| TaaI | ACNGT | 2 cut(s) | 10, 952 |
| TaiI | ACGT | 1 cut(s) | 1030 |
| TaqI | TCGA | 5 cut(s) | 101, 733, 856, 983, 1230 |
| TasI | AATT | 7 cut(s) | 205, 264, 570, 607, 627, 1110, 1209 |
| TauI | GCSGC | 2 cut(s) | 792, 795 |
| TfiI | GAWTC | 2 cut(s) | 166, 1232 |
| Tru1I | TTAA | 3 cut(s) | 461, 537, 770 |
| Tru9I | TTAA | 3 cut(s) | 461, 537, 770 |
| TscAI | CASTG | 5 cut(s) | 15, 44, 238, 373, 791 |
| TseFI | GTSAC | 1 cut(s) | 722 |
| TseI | GCWGC | 5 cut(s) | 210, 354, 671, 886, 1008 |
| Tsp45I | GTSAC | 1 cut(s) | 722 |
| TspDTI | ATGAA | 3 cut(s) | 53, 273, 1224 |
| TspGWI | ACGGA | 2 cut(s) | 186, 339 |
| TspRI | CASTG | 5 cut(s) | 15, 44, 238, 373, 791 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 499 |
| VpaK11BI | GGWCC | 1 cut(s) | 419 |
| XapI | RAATTY | 1 cut(s) | 607 |
| XceI | RCATGY | 2 cut(s) | 701, 826 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 326 |
| XhoI | CTCGAG | 1 cut(s) | 982 |
| XmaJI | CCTAGG | 1 cut(s) | 902 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1110, 1200 |
| XspI | CTAG | 5 cut(s) | 105, 483, 836, 903, 1293 |