MD11G1229000.v1.1

zinc finger

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
33281932 .. 33284301
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1229000.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGCCAACAGTATGGTTCTCTCTGAAGAAATCTCTGCACTGCCAATCAGAGCCATCAGATGTTCATGCTCCAAAAGCCAGGAAACAACTGAGCACAATCTTGACAAGAAAGGCAAGAGGAGGAAGATCAGGGTGCTCAAGATCCATAGCAAATCTCAAGGATGTGATTCATGGCAGCAAGAGGCATATGGAAAGGCCACCAAATAATTGCAGCCCAAGATCCATTGGAAGCAGTGAGTTTCTCAACCCAATAACCCATGAAGTAATTTTGAGCAACTCAAGGTGTGAGCTCAAAATCACCACCAGCCTTGGTGGCTTCCATGACGGTGTTGGGGGTGGAAATGCTAACAATGATGGCTGCGGTGGCGGTGGTGGTTCAACGTTTATGGATACCCTAAAGCCTGGGACACCTGGTCCTGGTGGGCACCCTACAATGCACTACTTCAATCCATCTTTTAGGACTTCCTCAACTCCTCCAAGAAAATGCCATTTTCTGGCTTCTGCTGATAGTACAGAAGGGCATGCTGGCTTCAAGGGTTCTGCTTTTTCTGGAAGTGCTGGCGGAATTAGACAAAGCAATAGGATTTCTTTCGACAAAGAAAATTATAATGGCTCTTCTGCAATTACTTGCCACAAATGTGGAGAGCATTTTAGCAAATGGGATGCTGCTGAAGCTCATCATCTCTCTAAACATGCTGTGACTGAACTGATGGAAGGCGACTCATCTCGAAAAATCGTTGAGATAATATGCCGGACAAGCTGGTTAAAATCCGAGAACCACTGCGGCCGGATTGAGAGAGTGCTCAAAGTCCACAACATGCAAAGAACTCTAGCGCGATTCGAAGAGTATCGAGAGATTGTGAAGATCAAAGCCAGCAAGCTGGCCAAGAAGCACCCTAGGTGCATTGCTGATGGGAATGAGCTCTTGAGGTTTTACGGCACCACTGTGGCCTGCTCTCTCGGCCTAAATGGATCCTCGAGCCTTTGCGTATCGGAGAAATGCAGCGTTTGTAGGATCATACGTAACGGGTTCTCTGCAAAAAAGGAGCTCAAGGAAGGTGTTGGTGTATTTACAACTTCTACAAGTGGAAGAGCTTTTGAAGCAATTGAAATATTGGAGGAAGATGCAAGTGTAAGGAAAGCTTTGATAGTGTGCAGAGTGATTGCTGGGAGGGTTCATAAGCCGTTGGAAAACATTCAGGAAATTGCTGGGCAAATGGGGTTTGATTCATTGGCTGGAAAAATGGGGCTTTATTCCAACATTGAAGAGCTTTATCTGCTAAATCCTAGAGCTCTCCTTCCCTGCTTTCTGGTCATCTGCAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

48.1

Weight (kDa)

9.29

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013269)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB1I GGYRCC 2 cut(s) 423, 938
AccB7I CCANNNNNTGG 1 cut(s) 493
AccII CGCG 1 cut(s) 835
AciI CCGC 4 cut(s) 360, 366, 561, 783
AclI AACGTT 1 cut(s) 380
AclWI GGATC 5 cut(s) 135, 213, 966, 979, 1022
AcoI YGGCCR 2 cut(s) 784, 882
AcuI CTGAAG 2 cut(s) 44, 690
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 2 cut(s) 416, 493
AgsI TTSAA 6 cut(s) 378, 445, 532, 1100, 1109, 1265
AhdI GACNNNNNGTC 1 cut(s) 411
AjnI CCWGG 4 cut(s) 77, 400, 409, 415
AleI CACNNNNGTG 2 cut(s) 636, 944
Alw21I GWGCWC 7 cut(s) 95, 137, 291, 804, 924, 1050, 1294
AlwI GGATC 5 cut(s) 135, 213, 966, 979, 1022
Ama87I CYCGRG 1 cut(s) 976
AoxI GGCC 5 cut(s) 194, 784, 882, 948, 961
ApeKI GCWGC 5 cut(s) 174, 210, 357, 665, 1002
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 896
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 840
AvaI CYCGRG 1 cut(s) 976
AvaII GGWCC 1 cut(s) 413
AvrII CCTAGG 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 426
BalI TGGCCA 1 cut(s) 884
BamHI GGATCC 1 cut(s) 971
BanI GGYRCC 2 cut(s) 423, 938
BanII GRGCYC 4 cut(s) 291, 924, 1050, 1294
Bbv12I GWGCWC 7 cut(s) 95, 137, 291, 804, 924, 1050, 1294
BbvI GCAGC 5 cut(s) 186, 222, 344, 652, 1014
BccI CCATC 5 cut(s) 61, 347, 457, 703, 905
BceAI ACGGC 2 cut(s) 952, 1168
BciT130I CCWGG 4 cut(s) 79, 402, 411, 417
BciVI GTATCC 1 cut(s) 382
BfaI CTAG 3 cut(s) 830, 897, 1287
BfuI GTATCC 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 312
BisI GCNGC 6 cut(s) 175, 211, 358, 666, 784, 1003
BlnI CCTAGG 1 cut(s) 896
BlsI GCNGC 6 cut(s) 176, 212, 359, 667, 785, 1004
Bme1390I CCNGG 4 cut(s) 79, 402, 411, 417
Bme18I GGWCC 1 cut(s) 413
BmeRI GACNNNNNGTC 1 cut(s) 411
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 3 cut(s) 425, 940, 973
BmrFI CCNGG 4 cut(s) 79, 402, 411, 417
BmsI GCATC 2 cut(s) 652, 1114
Bpu14I TTCGAA 1 cut(s) 840
BpuEI CTTGAG 5 cut(s) 121, 140, 262, 946, 1034
BsaAI YACGTR 1 cut(s) 1022
BsaJI CCNNGG 3 cut(s) 307, 401, 896
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 493
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 4 cut(s) 79, 402, 411, 417
BseDI CCNNGG 3 cut(s) 307, 401, 896
BseGI GGATG 2 cut(s) 166, 667
BseLI CCNNNNNNNGG 2 cut(s) 416, 493
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 2 cut(s) 132, 462
BseSI GKGCMC 1 cut(s) 426
BseX3I CGGCCG 1 cut(s) 784
BseXI GCAGC 5 cut(s) 186, 222, 344, 652, 1014
BseYI CCCAGC 2 cut(s) 1166, 1208
BsgI GTGCAG 2 cut(s) 20, 1174
Bsh1236I CGCG 1 cut(s) 835
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 5 cut(s) 196, 786, 884, 950, 963
BshNI GGYRCC 2 cut(s) 423, 938
BsiEI CGRYCG 1 cut(s) 787
BsiHKAI GWGCWC 7 cut(s) 95, 137, 291, 804, 924, 1050, 1294
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 2 cut(s) 751, 787
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 416, 493
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 5 cut(s) 196, 786, 884, 950, 963
BsoBI CYCGRG 1 cut(s) 976
Bsp119I TTCGAA 1 cut(s) 840
Bsp1286I GDGCHC 8 cut(s) 95, 137, 291, 426, 804, 924, 1050, 1294
Bsp143I GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
BspACI CCGC 4 cut(s) 360, 366, 561, 783
BspANI GGCC 5 cut(s) 196, 786, 884, 950, 963
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 835
BspLI GGNNCC 3 cut(s) 425, 940, 973
BspPI GGATC 5 cut(s) 135, 213, 966, 979, 1022
BspQI GCTCTTC 3 cut(s) 619, 1084, 1260
BspT104I TTCGAA 1 cut(s) 840
BspT107I GGYRCC 2 cut(s) 423, 938
BsrDI GCAATG 1 cut(s) 903
BssECI CCNNGG 3 cut(s) 307, 401, 896
BssMI GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
BssT1I CCWWGG 2 cut(s) 307, 896
Bst2UI CCWGG 4 cut(s) 79, 402, 411, 417
Bst4CI ACNGT 3 cut(s) 10, 326, 946
Bst6I CTCTTC 4 cut(s) 619, 837, 1084, 1260
BstBAI YACGTR 1 cut(s) 1022
BstBI TTCGAA 1 cut(s) 840
BstC8I GCNNGC 7 cut(s) 522, 526, 559, 874, 878, 882, 952
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 166, 667
BstFNI CGCG 1 cut(s) 835
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 6 cut(s) 128, 143, 221, 867, 974, 1017
BstMBI GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 8 cut(s) 74, 312, 363, 671, 756, 960, 1100, 1276
BstNI CCWGG 4 cut(s) 79, 402, 411, 417
BstNSI RCATGY 3 cut(s) 524, 695, 820
BstSCI CCNGG 4 cut(s) 77, 400, 409, 415
BstSLI GKGCMC 1 cut(s) 426
BstSNI TACGTA 1 cut(s) 1022
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 5 cut(s) 186, 222, 344, 652, 1014
BstX2I RGATCY 3 cut(s) 140, 218, 971
BstXI CCANNNNNNTGG 3 cut(s) 12, 638, 880
BstYI RGATCY 3 cut(s) 140, 218, 971
BstZI CGGCCG 1 cut(s) 784
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 5 cut(s) 196, 786, 884, 950, 963
BtsCI GGATG 2 cut(s) 166, 667
BtsI GCAGTG 3 cut(s) 37, 238, 778
BtsIMutI CAGTG 4 cut(s) 37, 238, 778, 942
Cac8I GCNNGC 7 cut(s) 522, 526, 559, 874, 878, 882, 952
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 409
Csp6I GTAC 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 7 cut(s) 65, 170, 257, 320, 521, 692, 817
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 1 cut(s) 89
DpnI GATC 6 cut(s) 127, 142, 220, 866, 973, 1016
DpnII GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
DriI GACNNNNNGTC 1 cut(s) 411
EaeI YGGCCR 2 cut(s) 784, 882
EagI CGGCCG 1 cut(s) 784
Eam1104I CTCTTC 4 cut(s) 619, 837, 1084, 1260
Eam1105I GACNNNNNGTC 1 cut(s) 411
EarI CTCTTC 4 cut(s) 619, 837, 1084, 1260
EciI GGCGGA 1 cut(s) 576
Ecl136II GAGCTC 4 cut(s) 289, 922, 1048, 1292
EclXI CGGCCG 1 cut(s) 784
Eco105I TACGTA 1 cut(s) 1022
Eco130I CCWWGG 2 cut(s) 307, 896
Eco24I GRGCYC 4 cut(s) 291, 924, 1050, 1294
Eco47I GGWCC 1 cut(s) 413
Eco52I CGGCCG 1 cut(s) 784
Eco53kI GAGCTC 4 cut(s) 289, 922, 1048, 1292
Eco57I CTGAAG 2 cut(s) 44, 690
Eco88I CYCGRG 1 cut(s) 976
EcoICRI GAGCTC 4 cut(s) 289, 922, 1048, 1292
EcoRII CCWGG 4 cut(s) 77, 400, 409, 415
EcoT14I CCWWGG 2 cut(s) 307, 896
EcoT38I GRGCYC 4 cut(s) 291, 924, 1050, 1294
ErhI CCWWGG 2 cut(s) 307, 896
FaeI CATG 7 cut(s) 68, 173, 260, 323, 524, 695, 820
FalI AAGNNNNNCTT 2 cut(s) 1126, 1158
FaqI GGGAC 1 cut(s) 418
FatI CATG 7 cut(s) 64, 169, 256, 319, 520, 691, 816
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 6 cut(s) 175, 211, 358, 666, 784, 1003
FokI GGATG 2 cut(s) 173, 674
FriOI GRGCYC 4 cut(s) 291, 924, 1050, 1294
Fsp4HI GCNGC 6 cut(s) 175, 211, 358, 666, 784, 1003
FspBI CTAG 3 cut(s) 830, 897, 1287
GlaI GCGC 1 cut(s) 834
GluI GCNGC 6 cut(s) 175, 211, 358, 666, 784, 1003
GsaI CCCAGC 2 cut(s) 1170, 1212
HaeIII GGCC 5 cut(s) 196, 786, 884, 950, 963
HapII CCGG 2 cut(s) 751, 787
HhaI GCGC 1 cut(s) 835
Hin1II CATG 7 cut(s) 68, 173, 260, 323, 524, 695, 820
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HindIII AAGCTT 1 cut(s) 1140
HinfI GANTC 4 cut(s) 166, 719, 837, 1226
HpaII CCGG 2 cut(s) 751, 787
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 811
Hpy188I TCNGA 5 cut(s) 24, 49, 58, 772, 994
Hpy188III TCNNGA 7 cut(s) 100, 138, 549, 726, 851, 925, 1199
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 4 cut(s) 509, 707, 1049, 1307
HpyCH4III ACNGT 3 cut(s) 10, 326, 946
HpyCH4IV ACGT 2 cut(s) 380, 1021
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 312, 363, 671, 756, 960, 1100, 1276
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 2 cut(s) 380, 1021
Hsp92II CATG 7 cut(s) 68, 173, 260, 323, 524, 695, 820
HspAI GCGC 1 cut(s) 833
Kzo9I GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
LguI GCTCTTC 3 cut(s) 619, 1084, 1260
LmnI GCTCC 2 cut(s) 73, 1045
Lsp1109I GCAGC 5 cut(s) 186, 222, 344, 652, 1014
LweI GCATC 2 cut(s) 652, 1114
MabI ACCWGGT 1 cut(s) 409
MaeI CTAG 3 cut(s) 830, 897, 1287
MaeII ACGT 2 cut(s) 380, 1021
MaeIII GTNAC 2 cut(s) 697, 1022
MalI GATC 6 cut(s) 127, 142, 220, 866, 973, 1016
MboI GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
MboII GAAGA 8 cut(s) 37, 135, 606, 854, 874, 1101, 1133, 1277
MfeI CAATTG 1 cut(s) 1104
MflI RGATCY 3 cut(s) 140, 218, 971
MhlI GDGCHC 8 cut(s) 95, 137, 291, 426, 804, 924, 1050, 1294
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 7 cut(s) 205, 264, 564, 601, 621, 1104, 1203
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 1167, 1281
MnlI CCTC 9 cut(s) 110, 113, 174, 475, 483, 921, 985, 1111, 1164
Mox20I TGGCCA 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 1194
MscI TGGCCA 1 cut(s) 884
MseI TTAA 1 cut(s) 764
MslI CAYNNNNRTG 3 cut(s) 324, 636, 944
Msp20I TGGCCA 1 cut(s) 884
MspI CCGG 2 cut(s) 751, 787
MspR9I CCNGG 4 cut(s) 79, 402, 411, 417
MunI CAATTG 1 cut(s) 1104
MvaI CCWGG 4 cut(s) 79, 402, 411, 417
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 8 cut(s) 74, 312, 363, 671, 756, 960, 1100, 1276
NdeI CATATG 1 cut(s) 186
NdeII GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
NlaIII CATG 7 cut(s) 68, 173, 260, 323, 524, 695, 820
NlaIV GGNNCC 3 cut(s) 425, 940, 973
NmeAIII GCCGAG 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 697
NspI RCATGY 3 cut(s) 524, 695, 820
NspV TTCGAA 1 cut(s) 840
OliI CACNNNNGTG 2 cut(s) 636, 944
PaeI GCATGC 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 976
PciSI GCTCTTC 3 cut(s) 619, 1084, 1260
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 3 cut(s) 166, 837, 1226
PflMI CCANNNNNTGG 1 cut(s) 493
PkrI GCNGC 6 cut(s) 176, 212, 359, 667, 785, 1004
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
Ppu21I YACGTR 1 cut(s) 1022
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 4 cut(s) 291, 924, 1050, 1294
Psp1406I AACGTT 1 cut(s) 380
Psp6I CCWGG 4 cut(s) 77, 400, 409, 415
PspFI CCCAGC 2 cut(s) 1166, 1208
PspGI CCWGG 4 cut(s) 77, 400, 409, 415
PspN4I GGNNCC 3 cut(s) 425, 940, 973
PspPI GGNCC 1 cut(s) 413
PspXI VCTCGAGB 1 cut(s) 976
PsuI RGATCY 3 cut(s) 140, 218, 971
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 3 cut(s) 324, 636, 944
SacI GAGCTC 4 cut(s) 291, 924, 1050, 1294
SapI GCTCTTC 3 cut(s) 619, 1084, 1260
SaqAI TTAA 1 cut(s) 764
SatI GCNGC 6 cut(s) 175, 211, 358, 666, 784, 1003
Sau3AI GATC 6 cut(s) 125, 140, 218, 864, 971, 1014
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 4 cut(s) 79, 402, 411, 417
SduI GDGCHC 8 cut(s) 95, 137, 291, 426, 804, 924, 1050, 1294
SexAI ACCWGGT 1 cut(s) 409
SfaNI GCATC 2 cut(s) 652, 1114
Sfr274I CTCGAG 1 cut(s) 976
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 976
SmiMI CAYNNNNRTG 3 cut(s) 324, 636, 944
SmlI CTYRAG 6 cut(s) 136, 155, 277, 925, 976, 1049
SmoI CTYRAG 6 cut(s) 136, 155, 277, 925, 976, 1049
SnaBI TACGTA 1 cut(s) 1022
SphI GCATGC 1 cut(s) 524
Sse9I AATT 7 cut(s) 205, 264, 564, 601, 621, 1104, 1203
SsiI CCGC 4 cut(s) 360, 366, 561, 783
SspI AATATT 1 cut(s) 1113
SspMI CTAG 3 cut(s) 830, 897, 1287
SstI GAGCTC 4 cut(s) 291, 924, 1050, 1294
StyD4I CCNGG 4 cut(s) 77, 400, 409, 415
StyI CCWWGG 2 cut(s) 307, 896
TaaI ACNGT 3 cut(s) 10, 326, 946
TaiI ACGT 2 cut(s) 383, 1024
TaqI TCGA 5 cut(s) 591, 727, 840, 850, 977
TasI AATT 7 cut(s) 205, 264, 564, 601, 621, 1104, 1203
TatI WGTACW 1 cut(s) 509
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 3 cut(s) 166, 837, 1226
Tru1I TTAA 1 cut(s) 764
Tru9I TTAA 1 cut(s) 764
TscAI CASTG 4 cut(s) 44, 238, 785, 949
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 5 cut(s) 174, 210, 357, 665, 1002
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 5 cut(s) 53, 158, 273, 1166, 1218
TspRI CASTG 4 cut(s) 44, 238, 785, 949
Van91I CCANNNNNTGG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 413
XceI RCATGY 3 cut(s) 524, 695, 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 976
XmaJI CCTAGG 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 3 cut(s) 830, 897, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.