MD03G1224700.v1.1

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013040
Physical Location & Seq
Reverse (-)
31042152 .. 31043949
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1224700.v1.1.491

Sequence Viewer

Length: 147 bp
ATGAGGATTCTCTGGGCGTGTGCAATCGGCAGTGCTGTCAGCCTATATATGGTTGCTGTGGACAGACAACTAAAGAACAGGGAACGAGCGCTGGCTGAAGAGTTAAAAGCCATGGAGGCAGAATCAGGCAGCGGTGAGGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.25

Weight (kDa)

5.19

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 117
AfeI AGCGCT 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 49
Aor51HI AGCGCT 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 91
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 42, 95, 110
CviKI_1 RGCY 3 cut(s) 42, 95, 110
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 46, 48, 50, 113
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 92
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 2 cut(s) 7, 122
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 89
LpnPI CCDG 3 cut(s) 64, 77, 111
Lsp1109I GCAGC 1 cut(s) 141
MboII GAAGA 1 cut(s) 110
MnlI CCTC 2 cut(s) 109, 130
MseI TTAA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 116
NcoI CCATGG 1 cut(s) 111
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 2 cut(s) 7, 122
PkrI GCNGC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 130
SetI ASST 1 cut(s) 141
SgeI CNNG 7 cut(s) 25, 30, 91, 98, 104, 124, 138
SsiI CCGC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 111
TfiI GAWTC 2 cut(s) 7, 122
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 129
TspRI CASTG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.