pycom03g17300

endonuclease activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
18499093 .. 18500560
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17300.3

Sequence Viewer

Length: 318 bp
ATGGGCAGGCATTTTGTTCTTACCAGTGAAGATTCTCTCATTTCTCTCCTTCCCTCCGCCGCTCCCTCCTCCATCTCCGTCACAAACGCTTGCTTTCTCCCTCGCTCTCTCTCTCTCTCTCTCATATTACAAGGTATGGCAGGCAGAGGAGTTATCGGGGATCGATGGTCCATGAGGATTCTCTGGGCGTGTGCAATCGGCAGTGCTGTCAGCCTATATATGGTTGCTGTGGACAGACAACTAAAGAACAGGGAACGAGCGCTGGCTGAAGAGTTAAAAGCCATGGAGGCAGAATCAGGCAGTGGTGAGGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.25

Weight (kDa)

6.56

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 2 cut(s) 57, 60
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 288
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 220
AlwI GGATC 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 168
BccI CCATC 2 cut(s) 80, 159
BfoI RGCGCY 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 58, 162
BshVI ATCGAT 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 220
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 2 cut(s) 57, 60
BspDI ATCGAT 1 cut(s) 163
BspPI GGATC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 4 cut(s) 8, 91, 142, 264
BstDSI CCRYGG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 287
Bsu15I ATCGAT 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 282
BtsI GCAGTG 2 cut(s) 208, 307
BtsIMutI CAGTG 3 cut(s) 31, 208, 307
Cac8I GCNNGC 4 cut(s) 8, 91, 142, 264
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 163
CviAII CATG 2 cut(s) 172, 283
CviJI RGCY 3 cut(s) 213, 266, 281
CviKI_1 RGCY 3 cut(s) 213, 266, 281
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 168
Eco47III AGCGCT 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 175, 286
FaiI YATR 7 cut(s) 125, 137, 173, 217, 219, 221, 284
FatI CATG 2 cut(s) 171, 282
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 263
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 175, 286
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 3 cut(s) 32, 178, 293
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 175, 286
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 37, 126, 169, 235, 248, 282
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 162
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 41, 281
MnlI CCTC 8 cut(s) 64, 76, 79, 111, 140, 168, 280, 301
MseI TTAA 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 175, 286
NmuCI GTSAC 1 cut(s) 79
PfeI GAWTC 3 cut(s) 32, 178, 293
PkrI GCNGC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 168
SetI ASST 2 cut(s) 136, 312
SinI GGWCC 1 cut(s) 168
SsiI CCGC 2 cut(s) 57, 60
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 163
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 32, 178, 293
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 3 cut(s) 31, 208, 307
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 3 cut(s) 31, 208, 307
VpaK11BI GGWCC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.