Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010004

Physical Location & Seq

Genomic Coordinates Forward (+)

32261489 .. 32266313

Gene Structure 4825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1237300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATCATCAGCAATCGGACATCAAAACCAACGGCTCTGATTTATCCTCCACCTCCTCCTCCTCCTTCTCCGACCTCCAGTACCAATCGGGCTTCCACAACCACTTCTCCTCCGAAGCTCTCCCCGGAGCTCTCCCCCACGGACAGAGCAGCCCCCTTGTCTGCCCGTACGGCGTCTACGCTGAACAAATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAACCTCCGATCATGGCTCTACCGCGTCAAGCCCTCCGTCACCCACGAGCCCTTCAGGCCGCTCGAGCCGAGCCACAGAAAGCTCGTTTCCGAGTTCACCCAGGCGAACAGCTCCACCACGCCGACTCAGCTCCGGTGGAAGCCCGTCGATGTACCCGAGTCCCCCACCGACTTTGTTGAAGGGTTGTTCACCGTGTGTGGCGCCGGGAGCTCGTTCCTCCGCCACGGTTTTGCTATTCACATGTACACTGCCAACAAATCAATGGATAATTGTGCGTTTTGCAACGCGGATGGCGATTTCTTGATCGTTCCCCAGACTGGAAACTCCCCATTCATTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004411 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016491 GO:0016701 GO:0016702 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051213 GO:0055114 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

HgmA

Protein Analysis

189

Amino Acids

20.72

Weight (kDa)

6.43

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HgmA_N	PF20510	27 - 183	2.2e-66	Homogentisate 1,2-dioxygenase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54080 AT5G54080
fragaria_vesca	FvH4_3g19020 FvH4_3g19020 FvH4_3g19020
malus_domestica	MD03G1237300.v1.1 MD03G1237500.v1.1
prunus_persica	Prupe.4G172100_v2.0.a1
pyrus_communis	pycom03g18320
rosa_chinensis	RchiOBHm_Chr5g0031821
rosa_laevigata	RLG00000033349
rosa_multiflora	Rmu_co8454513.1_g000001 Rmu_sc0006847.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048450
rosa_rugosa	Rorug05G0127800 Rorug05G0127900
rosa_samantha	Rh5AG222100 Rh5BG222100 Rh5CG245400 Rh5DG227000
rosa_wichuraiana	Rw5G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 425
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	249, 512
AciI	CCGC	4 cut(s)	247, 284, 445, 512
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	262
AcyI	GRCGYC	2 cut(s)	174, 426
AdeI	CACNNNGTG	1 cut(s)	420
AfaI	GTAC	4 cut(s)	83, 170, 378, 470
AfiI	CCNNNNNNNGG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	7 cut(s)	119, 131, 223, 307, 336, 355, 435
AluI	AGCT	7 cut(s)	119, 131, 223, 307, 336, 355, 435
Alw21I	GWGCWC	2 cut(s)	133, 437
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	2 cut(s)	287, 380
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	428
AsuC2I	CCSGG	2 cut(s)	126, 430
AsuHPI	GGTGA	4 cut(s)	199, 256, 313, 406
AvaI	CYCGRG	2 cut(s)	287, 380
BanI	GGYRCC	2 cut(s)	197, 425
BanII	GRGCYC	3 cut(s)	133, 276, 437
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	133, 437
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	509
BceAI	ACGGC	2 cut(s)	49, 187
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	126, 430
BfoI	RGCGCY	1 cut(s)	429
BglI	GCCNNNNNGGC	2 cut(s)	171, 280
BisI	GCNGC	2 cut(s)	151, 284
BlsI	GCNGC	2 cut(s)	152, 285
Bme1390I	CCNGG	3 cut(s)	126, 326, 430
BmeT110I	CYCGRG	2 cut(s)	287, 380
BmiI	GGNNCC	2 cut(s)	199, 427
BmrFI	CCNGG	3 cut(s)	126, 326, 430
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	126, 430
BsaHI	GRCGYC	2 cut(s)	174, 426
BsaJI	CCNNGG	4 cut(s)	124, 139, 324, 448
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 95, 122, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	79, 547
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	4 cut(s)	124, 139, 324, 448
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	79, 547
BseRI	GAGGAG	4 cut(s)	46, 49, 52, 100
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	2 cut(s)	249, 512
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	2 cut(s)	197, 425
BsiHKAI	GWGCWC	2 cut(s)	133, 437
BsiHKCI	CYCGRG	2 cut(s)	287, 380
BsiSI	CCGG	4 cut(s)	126, 195, 358, 429
BsiWI	CGTACG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	2 cut(s)	287, 380
Bsp1286I	GDGCHC	3 cut(s)	133, 276, 437
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	4, 233, 528
BspACI	CCGC	4 cut(s)	247, 284, 445, 512
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	249, 512
BspLI	GGNNCC	2 cut(s)	199, 427
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	197, 425
BsrBI	CCGCTC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	79, 547
BssECI	CCNNGG	4 cut(s)	124, 139, 324, 448
BssMI	GATC	3 cut(s)	4, 233, 528
BssNI	GRCGYC	2 cut(s)	174, 426
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	418, 452
BstACI	GRCGYC	2 cut(s)	174, 426
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	139, 448
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	2 cut(s)	249, 512
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	7, 236, 531
BstMBI	GATC	3 cut(s)	4, 233, 528
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 280, 289, 352, 432
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	3 cut(s)	124, 324, 428
BstUI	CGCG	2 cut(s)	249, 512
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	2 cut(s)	139, 448
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	428
CseI	GACGC	2 cut(s)	163, 238
Csp6I	GTAC	4 cut(s)	82, 169, 377, 469
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	2 cut(s)	237, 466
CviQI	GTAC	4 cut(s)	82, 169, 377, 469
DdeI	CTNAG	1 cut(s)	351
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	3 cut(s)	6, 235, 530
DpnII	GATC	3 cut(s)	4, 233, 528
DraIII	CACNNNGTG	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	434
Ecl136II	GAGCTC	2 cut(s)	131, 435
Eco24I	GRGCYC	3 cut(s)	133, 276, 437
Eco53kI	GAGCTC	2 cut(s)	131, 435
Eco57I	CTGAAG	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	287, 380
EcoICRI	GAGCTC	2 cut(s)	131, 435
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	3 cut(s)	133, 276, 437
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
FaeI	CATG	2 cut(s)	240, 469
FaiI	YATR	2 cut(s)	238, 467
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	236, 465
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	151, 284
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	3 cut(s)	133, 276, 437
Fsp4HI	GCNGC	2 cut(s)	151, 284
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	151, 284
GsuI	CTGGAG	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	4 cut(s)	126, 195, 358, 429
HgaI	GACGC	2 cut(s)	163, 238
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	2 cut(s)	174, 426
Hin1II	CATG	2 cut(s)	240, 469
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	349, 383
HpaII	CCGG	4 cut(s)	126, 195, 358, 429
HphI	GGTGA	4 cut(s)	199, 256, 313, 406
Hpy166II	GTNNAC	4 cut(s)	178, 321, 414, 471
Hpy188I	TCNGA	6 cut(s)	19, 40, 73, 115, 233, 316
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	4 cut(s)	178, 321, 414, 471
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	76, 214, 286, 398
HpyCH4III	ACNGT	2 cut(s)	418, 452
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 280, 289, 352, 432
HpyF3I	CTNAG	1 cut(s)	351
Hsp92I	GRCGYC	2 cut(s)	174, 426
Hsp92II	CATG	2 cut(s)	240, 469
HspAI	GCGC	1 cut(s)	426
KasI	GGCGCC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	4, 233, 528
LmnI	GCTCC	4 cut(s)	128, 341, 360, 432
Lsp1109I	GCAGC	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	6, 235, 530
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	3 cut(s)	4, 233, 528
MhlI	GDGCHC	3 cut(s)	133, 276, 437
MluCI	AATT	1 cut(s)	493
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	2 cut(s)	343, 392
MmeI	TCCRAC	1 cut(s)	96
MspI	CCGG	4 cut(s)	126, 195, 358, 429
MspR9I	CCNGG	3 cut(s)	126, 326, 430
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	249, 512
MwoI	GCNNNNNNNGC	5 cut(s)	171, 280, 289, 352, 432
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	2 cut(s)	126, 430
NdeII	GATC	3 cut(s)	4, 233, 528
NlaIII	CATG	2 cut(s)	240, 469
NlaIV	GGNNCC	2 cut(s)	199, 427
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	287
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 516
Pfl23II	CGTACG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	152, 285
PleI	GAGTC	2 cut(s)	343, 391
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	2 cut(s)	343, 391
PscI	ACATGT	1 cut(s)	465
Psp124BI	GAGCTC	2 cut(s)	133, 437
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspLI	CGTACG	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	199, 427
PspXI	VCTCGAGB	1 cut(s)	287
RsaI	GTAC	4 cut(s)	83, 170, 378, 470
RsaNI	GTAC	4 cut(s)	82, 169, 377, 469
SacI	GAGCTC	2 cut(s)	133, 437
SatI	GCNGC	2 cut(s)	151, 284
Sau3AI	GATC	3 cut(s)	4, 233, 528
SchI	GAGTC	2 cut(s)	343, 392
ScrFI	CCNGG	3 cut(s)	126, 326, 430
SduI	GDGCHC	3 cut(s)	133, 276, 437
SfoI	GGCGCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	247, 284, 445, 512
SspDI	GGCGCC	1 cut(s)	425
SstI	GAGCTC	2 cut(s)	133, 437
StyD4I	CCNGG	3 cut(s)	124, 324, 428
TaaI	ACNGT	2 cut(s)	418, 452
TaqI	TCGA	2 cut(s)	288, 372
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	547
TspGWI	ACGGA	2 cut(s)	156, 250
TspRI	CASTG	1 cut(s)	478
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.