Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010004

Physical Location & Seq

Genomic Coordinates Reverse (-)

11334070 .. 11359712

Gene Structure 25643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0127800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGCTCTCAAACTCTTCAGTTTTTTCCCTGTTTCTTCTTATTTTGTTATCATCTTCATCAGCAAAACCACCATCTTCAAAACAAAACAGTTTTATCCAATGCCTCTCATATCATTCTAAGGCTTCTATTCCATTCTCTAGTACCTTTTTCACTCCAAACAGTTCTGCATTCACTACCGTCCTAAATTCAACTGCACAAAACCTCAGGTGCTTGATCCCTTCAAAGCCAAAGCCAGAGTTCATTTTCACACCAACAGATGATTCCCAAGTTCAAAATGCTGTTATTTGTTCAAAACAGCTTGGAATACATATCAGGGTCCGAAGTGGAGGGCATGATTATGAAGGTCTCTCGTATGTTTCCCAAATTGAGACACCTTTCATTGTTGTAGACCTTGCCAAGCTTCGATCAGTTAATGTTAATATCCAAGCCAATAGTGCATGGATTCAAGCTGGAGCCACTATTGGTGAAGTTTACTACAGAATTGCAGAGAAAAGCAGAACCCACGGCTTCCCAGCTGGTCTTTGCACAAGTTTAGGGGTGGGCGGCCATATAACTGGAGGTGCATATGGTACTATGATGAGGAAATATGGCCTTGCAGCTGATAACGTCCTGGATGCCCGAATAGTTGATGTCAACGGCAGAATTCTTGACCGAAAGACCATGGGAGAAGACCTGTTTTGGGCAATCAGAGGTGGTGGAGGAGCAAGCTTTGGAATCATCCTGTGGTGGAAGATAAAGTTGGTTCCCGTTCCATCAACTGTGACGGTTTTTACAGTTTCCAAGACATTGGAACAGGGTGCCACAAAGCTCCTCCATAGATGGCAACAAGTAGCTGCTACTAAGCTCGACAAAGATCTCAACATTAGAGTTATGATACAACCAACAGTAGCTGACAGCAAAAGTGGCAAGAGAACTGTCACAACTCTTTACCAAGGTCAATTCCTTGGAGGTGTTAAAAGGCTCCTCAATGTTATGCAAACAGGGTTCCCCGAACTGAATTTGACAAGAAAAGATTGTACACAAACGAGTTGGCTCAAGTCTGTGATGTACATAGCAGGTTACGCAACTGGAACTCCGCCCCAGGTTTTGCTTCAAGGAAAACCCACATTCAAGAGCTACTTCAAAGCCAAATCAGACTTTGTCAAAGACCCGATTCCTGAAACTGGGCTTGAGGGGCTATGGAAAAGGTTGTTGGAAGAAACCACTCCTGTGATTATTTGGAATCCATATGGGGGAGTGATGAGCGAAATTTCCGAGTCAGCAATACCCTTCCCGCACAGAAATGTTCTCTTCAAAATTCAGTACATCACTGTATGGCTAGCTGAAGATGAAAACGAGGCAAAGCACATAGATTGGATTAGGAAGCTCTACAGCTACATGGCTCCTTATGTTACAAAGTCCCCAAGGCAAGCATATGTGAATTATAGGGATCTTGATTTGGGGATAAACAATAAAAAGAACACTAGCATCACTGAAGCAAGTGCTTGGGGTAACAGGTATTTCAAGGACAACTTTGACAGATTGATAAAGACTAAAACCAAAGTTGATCCTCACAACTTCTTCAGGCACGAACAGAGCATCCCACCTCTTGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004411 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016491 GO:0016701 GO:0016702 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051213 GO:0055114 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

HgmA

Protein Analysis

532

Amino Acids

59.36

Weight (kDa)

9.56

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	78 - 216	8.3e-26	FAD binding domain
BBE	PF08031	471 - 528	5.5e-20	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54080 AT5G54080
fragaria_vesca	FvH4_3g19020 FvH4_3g19020 FvH4_3g19020
malus_domestica	MD03G1237300.v1.1 MD03G1237500.v1.1
prunus_persica	Prupe.4G172100_v2.0.a1
pyrus_communis	pycom03g18320
rosa_chinensis	RchiOBHm_Chr5g0031821
rosa_laevigata	RLG00000033349
rosa_multiflora	Rmu_co8454513.1_g000001 Rmu_sc0006847.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048450
rosa_rugosa	Rorug05G0127800 Rorug05G0127900
rosa_samantha	Rh5AG222100 Rh5BG222100 Rh5CG245400 Rh5DG227000
rosa_wichuraiana	Rw5G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	3 cut(s)	543, 1076, 1274
AclWI	GGATC	3 cut(s)	208, 1437, 1541
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	5 cut(s)	184, 642, 997, 1248, 1296
AcuI	CTGAAG	3 cut(s)	1344, 1494, 1546
AfaI	GTAC	5 cut(s)	142, 571, 1018, 1049, 1304
AfiI	CCNNNNNNNGG	3 cut(s)	679, 1163, 1232
AjnI	CCWGG	2 cut(s)	609, 1080
AjuI	GAANNNNNNNTTGG	6 cut(s)	244, 276, 722, 754, 1175, 1207
AleI	CACNNNNGTG	1 cut(s)	1208
AloI	GAACNNNNNNTCC	2 cut(s)	1563, 1595
Alw26I	GTCTC	2 cut(s)	350, 362
AlwI	GGATC	3 cut(s)	208, 1437, 1541
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	2 cut(s)	544, 589
ApeKI	GCWGC	2 cut(s)	596, 833
ApoI	RAATTY	5 cut(s)	184, 642, 997, 1248, 1296
AspLEI	GCGC	1 cut(s)	1594
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	476
AsuNHI	GCTAGC	1 cut(s)	1318
AvaII	GGWCC	1 cut(s)	316
AxyI	CCTNAGG	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	675
BbvI	GCAGC	2 cut(s)	608, 820
BccI	CCATC	3 cut(s)	79, 760, 813
BceAI	ACGGC	2 cut(s)	520, 652
BciT130I	CCWGG	2 cut(s)	611, 1082
BcoDI	GTCTC	2 cut(s)	350, 362
BfaI	CTAG	4 cut(s)	138, 1319, 1464, 1597
BfmI	CTRYAG	2 cut(s)	475, 1369
BfuAI	ACCTGC	1 cut(s)	1046
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	3 cut(s)	544, 597, 834
BlsI	GCNGC	3 cut(s)	545, 598, 835
Bme1390I	CCNGG	2 cut(s)	611, 1082
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	7 cut(s)	317, 454, 744, 799, 962, 986, 1383
BmrFI	CCNGG	2 cut(s)	611, 1082
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	3 cut(s)	604, 1476, 1587
BmtI	GCTAGC	1 cut(s)	1322
BmuI	ACTGGG	1 cut(s)	1173
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	2 cut(s)	471, 576
BpuEI	CTTGAG	2 cut(s)	1019, 1190
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	502, 660, 931, 943, 1080, 1403
BsaXI	ACNNNNNCTCC	2 cut(s)	1057, 1087
Bsc4I	CCNNNNNNNGG	3 cut(s)	679, 1163, 1232
Bse1I	ACTGG	3 cut(s)	559, 1072, 1168
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	611, 1082
BseDI	CCNNGG	6 cut(s)	502, 660, 931, 943, 1080, 1403
BseGI	GGATG	3 cut(s)	619, 717, 1578
BseLI	CCNNNNNNNGG	3 cut(s)	679, 1163, 1232
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	3 cut(s)	559, 1072, 1168
BseRI	GAGGAG	3 cut(s)	714, 800, 953
BseXI	GCAGC	2 cut(s)	608, 820
BseYI	CCCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	546, 591
BshNI	GGYRCC	1 cut(s)	797
BslFI	GGGAC	1 cut(s)	1384
BslI	CCNNNNNNNGG	3 cut(s)	679, 1163, 1232
BsmAI	GTCTC	2 cut(s)	350, 362
BsmFI	GGGAC	1 cut(s)	1384
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	546, 591
Bso31I	GGTCTC	1 cut(s)	350
Bsp1407I	TGTACA	2 cut(s)	1016, 1047
Bsp143I	GATC	5 cut(s)	213, 404, 853, 1429, 1546
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	3 cut(s)	543, 1076, 1274
BspANI	GGCC	2 cut(s)	546, 591
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	7 cut(s)	317, 454, 744, 799, 962, 986, 1383
BspMI	ACCTGC	1 cut(s)	1046
BspOI	GCTAGC	1 cut(s)	1322
BspPI	GGATC	3 cut(s)	208, 1437, 1541
BspT107I	GGYRCC	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	350
BsrGI	TGTACA	2 cut(s)	1016, 1047
BsrI	ACTGG	3 cut(s)	559, 1072, 1168
BssECI	CCNNGG	6 cut(s)	502, 660, 931, 943, 1080, 1403
BssMI	GATC	5 cut(s)	213, 404, 853, 1429, 1546
BssT1I	CCWWGG	4 cut(s)	660, 931, 943, 1403
Bst2UI	CCWGG	2 cut(s)	611, 1082
Bst4CI	ACNGT	9 cut(s)	89, 161, 178, 760, 766, 775, 886, 916, 1312
Bst6I	CTCTTC	2 cut(s)	19, 1295
BstAUI	TGTACA	2 cut(s)	1016, 1047
BstC8I	GCNNGC	3 cut(s)	706, 1320, 1410
BstDEI	CTNAG	3 cut(s)	117, 203, 840
BstDSI	CCRYGG	2 cut(s)	502, 660
BstF5I	GGATG	3 cut(s)	619, 717, 1578
BstHHI	GCGC	1 cut(s)	1594
BstKTI	GATC	5 cut(s)	216, 407, 856, 1432, 1549
BstMAI	GTCTC	2 cut(s)	350, 362
BstMBI	GATC	5 cut(s)	213, 404, 853, 1429, 1546
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 903, 1061, 1174
BstNI	CCWGG	2 cut(s)	611, 1082
BstSCI	CCNGG	2 cut(s)	609, 1080
BstSFI	CTRYAG	2 cut(s)	475, 1369
BstV1I	GCAGC	2 cut(s)	608, 820
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	2 cut(s)	853, 1429
BstXI	CCANNNNNNTGG	2 cut(s)	554, 787
BstYI	RGATCY	2 cut(s)	853, 1429
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	546, 591
BtgI	CCRYGG	2 cut(s)	502, 660
BtsCI	GGATG	3 cut(s)	619, 717, 1578
BtsIMutI	CAGTG	2 cut(s)	1308, 1470
BveI	ACCTGC	1 cut(s)	1046
Cac8I	GCNNGC	3 cut(s)	706, 1320, 1410
CaiI	CAGNNNCTG	1 cut(s)	890
CfoI	GCGC	1 cut(s)	1594
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	5 cut(s)	141, 570, 1017, 1048, 1303
CviAII	CATG	4 cut(s)	332, 438, 661, 1378
CviQI	GTAC	5 cut(s)	141, 570, 1017, 1048, 1303
DdeI	CTNAG	3 cut(s)	117, 203, 840
DpnI	GATC	5 cut(s)	215, 406, 855, 1431, 1548
DpnII	GATC	5 cut(s)	213, 404, 853, 1429, 1546
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	19, 1295
EarI	CTCTTC	2 cut(s)	19, 1295
EciI	GGCGGA	1 cut(s)	1065
Eco130I	CCWWGG	4 cut(s)	660, 931, 943, 1403
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	3 cut(s)	1344, 1494, 1546
Eco81I	CCTNAGG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	609, 1080
EcoT14I	CCWWGG	4 cut(s)	660, 931, 943, 1403
ErhI	CCWWGG	4 cut(s)	660, 931, 943, 1403
FaeI	CATG	4 cut(s)	335, 441, 664, 1381
FalI	AAGNNNNNCTT	4 cut(s)	1103, 1135, 1496, 1528
FaqI	GGGAC	1 cut(s)	1384
FatI	CATG	4 cut(s)	331, 437, 660, 1377
FauI	CCCGC	1 cut(s)	1281
FauNDI	CATATG	3 cut(s)	565, 1228, 1414
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	544, 597, 834
FokI	GGATG	3 cut(s)	626, 704, 1565
Fsp4HI	GCNGC	3 cut(s)	544, 597, 834
FspBI	CTAG	4 cut(s)	138, 1319, 1464, 1597
GlaI	GCGC	1 cut(s)	1593
GluI	GCNGC	3 cut(s)	544, 597, 834
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	471, 576
HaeIII	GGCC	2 cut(s)	546, 591
HhaI	GCGC	1 cut(s)	1594
Hin1II	CATG	4 cut(s)	335, 441, 664, 1381
Hin6I	GCGC	1 cut(s)	1592
HinP1I	GCGC	1 cut(s)	1592
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	398, 706
HinfI	GANTC	6 cut(s)	260, 442, 714, 1153, 1222, 1256
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	4 cut(s)	388, 472, 634, 1019
Hpy188I	TCNGA	4 cut(s)	320, 689, 1135, 1255
Hpy188III	TCNNGA	4 cut(s)	647, 1111, 1157, 1433
Hpy8I	GTNNAC	4 cut(s)	388, 472, 634, 1019
HpyAV	CCTTC	3 cut(s)	228, 335, 1279
HpyCH4III	ACNGT	9 cut(s)	89, 161, 178, 760, 766, 775, 886, 916, 1312
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	8 cut(s)	167, 194, 437, 485, 525, 563, 596, 976
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 903, 1061, 1174
HpyF3I	CTNAG	3 cut(s)	117, 203, 840
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	335, 441, 664, 1381
HspAI	GCGC	1 cut(s)	1592
Kzo9I	GATC	5 cut(s)	213, 404, 853, 1429, 1546
LmnI	GCTCC	5 cut(s)	452, 701, 813, 966, 1387
Lsp1109I	GCAGC	2 cut(s)	608, 820
LweI	GCATC	3 cut(s)	604, 1476, 1587
MaeI	CTAG	4 cut(s)	138, 1319, 1464, 1597
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	5 cut(s)	760, 916, 1058, 1390, 1490
MalI	GATC	5 cut(s)	215, 406, 855, 1431, 1548
MboI	GATC	5 cut(s)	213, 404, 853, 1429, 1546
MflI	RGATCY	2 cut(s)	853, 1429
MluCI	AATT	9 cut(s)	184, 363, 480, 642, 938, 997, 1248, 1296, 1420
MlyI	GAGTC	1 cut(s)	1265
MmeI	TCCRAC	1 cut(s)	1173
MseI	TTAA	3 cut(s)	411, 417, 954
MslI	CAYNNNNRTG	3 cut(s)	336, 1208, 1281
MspA1I	CMGCKG	2 cut(s)	515, 599
MspR9I	CCNGG	2 cut(s)	611, 1082
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	611, 1082
MwoI	GCNNNNNNNGC	4 cut(s)	434, 903, 1061, 1174
NcoI	CCATGG	1 cut(s)	660
NdeI	CATATG	3 cut(s)	565, 1228, 1414
NdeII	GATC	5 cut(s)	213, 404, 853, 1429, 1546
NheI	GCTAGC	1 cut(s)	1318
NlaIII	CATG	4 cut(s)	335, 441, 664, 1381
NlaIV	GGNNCC	7 cut(s)	317, 454, 744, 799, 962, 986, 1383
NmuCI	GTSAC	2 cut(s)	760, 916
OliI	CACNNNNGTG	1 cut(s)	1208
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	5 cut(s)	260, 442, 714, 1153, 1222
PflFI	GACNNNGTC	1 cut(s)	1139
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	3 cut(s)	545, 598, 835
PleI	GAGTC	1 cut(s)	1264
PpsI	GAGTC	1 cut(s)	1264
Psp6I	CCWGG	2 cut(s)	609, 1080
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	609, 1080
PspN4I	GGNNCC	7 cut(s)	317, 454, 744, 799, 962, 986, 1383
PspPI	GGNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	2 cut(s)	853, 1429
PsyI	GACNNNGTC	1 cut(s)	1139
PvuII	CAGCTG	2 cut(s)	515, 599
RsaI	GTAC	5 cut(s)	142, 571, 1018, 1049, 1304
RsaNI	GTAC	5 cut(s)	141, 570, 1017, 1048, 1303
RseI	CAYNNNNRTG	3 cut(s)	336, 1208, 1281
SaqAI	TTAA	3 cut(s)	411, 417, 954
SatI	GCNGC	3 cut(s)	544, 597, 834
Sau3AI	GATC	5 cut(s)	213, 404, 853, 1429, 1546
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	1265
ScrFI	CCNGG	2 cut(s)	611, 1082
SfaNI	GCATC	3 cut(s)	604, 1476, 1587
SfcI	CTRYAG	2 cut(s)	475, 1369
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	3 cut(s)	336, 1208, 1281
SmlI	CTYRAG	2 cut(s)	1034, 1169
SmoI	CTYRAG	2 cut(s)	1034, 1169
Sse9I	AATT	9 cut(s)	184, 363, 480, 642, 938, 997, 1248, 1296, 1420
SsiI	CCGC	3 cut(s)	543, 1076, 1274
SspMI	CTAG	4 cut(s)	138, 1319, 1464, 1597
StyD4I	CCNGG	2 cut(s)	609, 1080
StyI	CCWWGG	4 cut(s)	660, 931, 943, 1403
TaaI	ACNGT	9 cut(s)	89, 161, 178, 760, 766, 775, 886, 916, 1312
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	403, 846
TaqII	GACCGA	1 cut(s)	666
TasI	AATT	9 cut(s)	184, 363, 480, 642, 938, 997, 1248, 1296, 1420
TatI	WGTACW	3 cut(s)	1016, 1047, 1302
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	5 cut(s)	260, 442, 714, 1153, 1222
Tru1I	TTAA	3 cut(s)	411, 417, 954
Tru9I	TTAA	3 cut(s)	411, 417, 954
TscAI	CASTG	2 cut(s)	1315, 1477
TseFI	GTSAC	2 cut(s)	760, 916
TseI	GCWGC	2 cut(s)	596, 833
Tsp45I	GTSAC	2 cut(s)	760, 916
TspDTI	ATGAA	5 cut(s)	45, 229, 354, 367, 1344
TspRI	CASTG	2 cut(s)	1315, 1477
Tth111I	GACNNNGTC	1 cut(s)	1139
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	5 cut(s)	184, 642, 997, 1248, 1296
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	4 cut(s)	138, 1319, 1464, 1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.