Prupe.4G172100_v2.0.a1

homogentisate 1,2-dioxygenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10193600 .. 10196933
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G172100.1

Sequence Viewer

Length: 1419 bp
ATGGATGATCATCAGCAACCGGTCATCAAAACCAACGGCCCAGATTCATCCTCGTCCTCCTTCTCCGACCTCCAGTACCAGTCGGGCTTCCACAACCACTTCTCCTCCGAAGCTCTCCCCGGAACTCTCCCCCACGGCCAGAGCAGCCCTCTCCTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCCGGCACCTCCTTCACTTCCCCTCGCAAGCTCAACCACCGGACATGGCTTTATCGCGTCAAGCCTTCAGTGACCCACGAGCCCTTCAAGCCGCTCGAGTCGAGCCACAGGAAGCTCGTCTCCGAGTTCACCGACTCGAACAGCTCCACCACGCCGACCCAGCTCCGGTGGAAGCCGGTTGATATACCCGAGACCCCCACAGACTTCGTTGAAGGGCTTTACACTGTGTGTGGTGCTGGGAGCTCGTTCCTCCGCCATGGTTTTGCTATTCACATGTACACTGCCAACAAATCAATGGATAATTGTGCATTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCACAAACTGGAAGGCTCTGGATCACTACCGAATGTGGAAAATTGCAAATTTCTCCTGGTGAAATTGCTGTATTACCTCAAGGATTTCGTTTTGCAGTTGATCTGCCTGATGGCCCTTCACGTGGCTATGTGGCCGAGGTTTTCGGCACCCATTTTCAACTCCCTGATCTTGGACCAATAGGAGCTAATGGTCTTGCTGCTCCAAGGGATTTTCTTGTTCCCACAGCATGGTTCGAAGATAGTTACCGTCCAGGCTACGTTATTATACAGAAATTTGGTGGGGAACTTTTTACTGCAAAGCAAGAATTCTCTCCCTTCAATGTAGTTGCTTGGCATGGCAATTATGCTCCATATAAGTATGATCTGACTACATTCTGCCCTTTCAACACTGTTTTATTTGATCATGGTGATCCATCAATCAATACAGTTTTGACAGCACCAACTGATAAACCTGGTGTTGCATTACTTGATTTTGTTATTTTCCCTCCGCGATGGTTGGTTGCCGAACATACATTCCGACCTCCATACTACCATCGTAATTGTATGAGCGAATTTATGGGCCTTATTTACGGAGGATATGAGGCGAAAGCTGATGGGTTTCTTCCAGGCGGTGCAAGCCTCCATAGCTGCATGACTCCCCATGGTCCTGATACCAAAACATATGAGGCTACCATTGCACGTGGAAATGAAGCAGGACCATCTAGAATTAGTGATACTTTGGCTTTCATGTTTGAATCTTGTTTGATCCCCAGAATATGCCCATGGGCTCTTGAGTCTCCCTTCATCGACCGTGATTATTACCAGTGTTGGATTGGTCTGAGATCACATTTCACACGGGAAGGGGCAAGTGCTAAAGATGGAGATATCCAGAATGGGGAGAAAGAGGATTAG

Protein Analysis

473

Amino Acids

52.42

Weight (kDa)

5.55

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 191, 674
AccB7I CCANNNNNTGG 2 cut(s) 536, 756
AccBSI CCGCTC 1 cut(s) 280
AccII CGCG 2 cut(s) 243, 1018
AciI CCGC 4 cut(s) 278, 439, 1016, 1137
AclWI GGATC 3 cut(s) 557, 932, 1267
AcoI YGGCCR 2 cut(s) 136, 660
AcsI RAATTY 4 cut(s) 576, 800, 833, 1079
AcuI CTGAAG 1 cut(s) 237
AcvI CACGTG 2 cut(s) 650, 1208
AdeI CACNNNGTG 1 cut(s) 414
AfaI GTAC 3 cut(s) 77, 164, 464
AfiI CCNNNNNNNGG 6 cut(s) 351, 536, 650, 698, 756, 1402
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 19
AgsI TTSAA 6 cut(s) 274, 398, 686, 847, 913, 1262
AjnI CCWGG 4 cut(s) 583, 778, 979, 1132
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
AluBI AGCT 9 cut(s) 113, 217, 301, 330, 349, 429, 713, 1118, 1155
AluI AGCT 9 cut(s) 113, 217, 301, 330, 349, 429, 713, 1118, 1155
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 3 cut(s) 310, 371, 1308
AlwI GGATC 3 cut(s) 557, 932, 1267
Ama87I CYCGRG 2 cut(s) 281, 374
AoxI GGCC 6 cut(s) 37, 136, 166, 640, 660, 1087
ApeKI GCWGC 3 cut(s) 144, 725, 1155
ApoI RAATTY 4 cut(s) 576, 800, 833, 1079
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 6 cut(s) 38, 641, 701, 1087, 1172, 1223
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 4 cut(s) 307, 524, 599, 947
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 2 cut(s) 281, 374
AvaII GGWCC 3 cut(s) 701, 1172, 1223
BanI GGYRCC 2 cut(s) 191, 674
BanII GRGCYC 3 cut(s) 270, 431, 1297
BauI CACGAG 1 cut(s) 263
BbrPI CACGTG 2 cut(s) 650, 1208
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 156, 712, 1142
BccI CCATC 8 cut(s) 503, 632, 949, 1014, 1068, 1115, 1234, 1379
BceAI ACGGC 3 cut(s) 52, 151, 181
BciT130I CCWGG 4 cut(s) 585, 780, 981, 1134
BclI TGATCA 2 cut(s) 7, 928
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 310, 371, 1308
BfaI CTAG 1 cut(s) 1230
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 4 cut(s) 145, 278, 726, 1156
BlsI GCNGC 4 cut(s) 146, 279, 727, 1157
Bme1390I CCNGG 5 cut(s) 120, 585, 780, 981, 1134
Bme18I GGWCC 3 cut(s) 701, 1172, 1223
BmeT110I CYCGRG 2 cut(s) 281, 374
BmgT120I GGNCC 6 cut(s) 38, 641, 701, 1087, 1172, 1223
BmiI GGNNCC 2 cut(s) 193, 676
BmrFI CCNGG 5 cut(s) 120, 585, 780, 981, 1134
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 170, 202
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 591, 1319
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 2 cut(s) 650, 1208
BsaBI GATNNNNATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 7 cut(s) 118, 133, 442, 663, 731, 1168, 1289
BsaWI WCCGGW 3 cut(s) 19, 225, 351
BsaXI ACNNNNNCTCC 4 cut(s) 86, 89, 116, 119
Bsc4I CCNNNNNNNGG 6 cut(s) 351, 536, 650, 698, 756, 1402
Bse118I RCCGGY 2 cut(s) 19, 361
Bse1I ACTGG 4 cut(s) 73, 79, 541, 1330
Bse3DI GCAATG 2 cut(s) 508, 1200
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 4 cut(s) 585, 780, 981, 1134
BseDI CCNNGG 7 cut(s) 118, 133, 442, 663, 731, 1168, 1289
BseGI GGATG 2 cut(s) 10, 47
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 6 cut(s) 351, 536, 650, 698, 756, 1402
BseMI GCAATG 2 cut(s) 508, 1200
BseMII CTCAG 1 cut(s) 1337
BseNI ACTGG 4 cut(s) 73, 79, 541, 1330
BseRI GAGGAG 2 cut(s) 94, 143
BseXI GCAGC 3 cut(s) 156, 712, 1142
BseYI CCCAGC 2 cut(s) 345, 422
Bsh1236I CGCG 2 cut(s) 243, 1018
Bsh1285I CGRYCG 1 cut(s) 1318
BshFI GGCC 6 cut(s) 39, 138, 168, 642, 662, 1089
BshNI GGYRCC 2 cut(s) 191, 674
BshTI ACCGGT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 1318
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 281, 374
BsiSI CCGG 6 cut(s) 20, 120, 189, 226, 352, 362
BsiWI CGTACG 1 cut(s) 162
BslI CCNNNNNNNGG 6 cut(s) 351, 536, 650, 698, 756, 1402
BsmAI GTCTC 3 cut(s) 310, 371, 1308
BsmBI CGTCTC 1 cut(s) 310
BsnI GGCC 6 cut(s) 39, 138, 168, 642, 662, 1089
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 2 cut(s) 281, 374
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 3 cut(s) 270, 431, 1297
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
Bsp19I CCATGG 3 cut(s) 442, 1168, 1289
BspACI CCGC 4 cut(s) 278, 439, 1016, 1137
BspANI GGCC 6 cut(s) 39, 138, 168, 642, 662, 1089
BspCNI CTCAG 1 cut(s) 1338
BspFNI CGCG 2 cut(s) 243, 1018
BspLI GGNNCC 2 cut(s) 193, 676
BspPI GGATC 3 cut(s) 557, 932, 1267
BspT104I TTCGAA 1 cut(s) 762
BspT107I GGYRCC 2 cut(s) 191, 674
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 508, 1200
BsrFI RCCGGY 2 cut(s) 19, 361
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 4 cut(s) 73, 79, 541, 1330
BssAI RCCGGY 2 cut(s) 19, 361
BssECI CCNNGG 7 cut(s) 118, 133, 442, 663, 731, 1168, 1289
BssMI GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 4 cut(s) 442, 731, 1168, 1289
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 4 cut(s) 585, 780, 981, 1134
Bst4CI ACNGT 5 cut(s) 412, 776, 919, 955, 1319
BstAUI TGTACA 1 cut(s) 462
BstBAI YACGTR 2 cut(s) 650, 1208
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 2 cut(s) 215, 1144
BstDEI CTNAG 1 cut(s) 1346
BstDSI CCRYGG 4 cut(s) 133, 442, 1168, 1289
BstF5I GGATG 2 cut(s) 10, 47
BstFNI CGCG 2 cut(s) 243, 1018
BstKTI GATC 9 cut(s) 10, 552, 631, 697, 892, 931, 940, 1275, 1352
BstMAI GTCTC 3 cut(s) 310, 371, 1308
BstMBI GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
BstMCI CGRYCG 1 cut(s) 1318
BstMWI GCNNNNNNNGC 7 cut(s) 144, 165, 274, 346, 1143, 1152, 1202
BstNI CCWGG 4 cut(s) 585, 780, 981, 1134
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 5 cut(s) 118, 583, 778, 979, 1132
BstUI CGCG 2 cut(s) 243, 1018
BstV1I GCAGC 3 cut(s) 156, 712, 1142
BsuRI GGCC 6 cut(s) 39, 138, 168, 642, 662, 1089
BtgI CCRYGG 4 cut(s) 133, 442, 1168, 1289
BtgZI GCGATG 1 cut(s) 1033
BtsCI GGATG 2 cut(s) 10, 47
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 5 cut(s) 261, 408, 465, 915, 1337
Cac8I GCNNGC 2 cut(s) 215, 1144
Cfr10I RCCGGY 2 cut(s) 19, 361
Cfr13I GGNCC 6 cut(s) 38, 641, 701, 1087, 1172, 1223
CseI GACGC 1 cut(s) 232
CsiI ACCWGGT 1 cut(s) 979
Csp6I GTAC 3 cut(s) 76, 163, 463
CspAI ACCGGT 1 cut(s) 19
CviQI GTAC 3 cut(s) 76, 163, 463
DdeI CTNAG 1 cut(s) 1346
DpnI GATC 9 cut(s) 9, 551, 630, 696, 891, 930, 939, 1274, 1351
DpnII GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
DraIII CACNNNGTG 1 cut(s) 414
EaeI YGGCCR 2 cut(s) 136, 660
EciI GGCGGA 1 cut(s) 428
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 4 cut(s) 442, 731, 1168, 1289
Eco24I GRGCYC 3 cut(s) 270, 431, 1297
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 1393
Eco47I GGWCC 3 cut(s) 701, 1172, 1223
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 237
Eco72I CACGTG 2 cut(s) 650, 1208
Eco88I CYCGRG 2 cut(s) 281, 374
EcoICRI GAGCTC 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 4 cut(s) 583, 778, 979, 1132
EcoRV GATATC 1 cut(s) 1393
EcoT14I CCWWGG 4 cut(s) 442, 731, 1168, 1289
EcoT38I GRGCYC 3 cut(s) 270, 431, 1297
ErhI CCWWGG 4 cut(s) 442, 731, 1168, 1289
Esp3I CGTCTC 1 cut(s) 310
FauNDI CATATG 1 cut(s) 1189
FbaI TGATCA 2 cut(s) 7, 928
Fnu4HI GCNGC 4 cut(s) 145, 278, 726, 1156
FokI GGATG 2 cut(s) 17, 34
FriOI GRGCYC 3 cut(s) 270, 431, 1297
Fsp4HI GCNGC 4 cut(s) 145, 278, 726, 1156
FspBI CTAG 1 cut(s) 1230
GluI GCNGC 4 cut(s) 145, 278, 726, 1156
GsaI CCCAGC 2 cut(s) 349, 426
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 6 cut(s) 39, 138, 168, 642, 662, 1089
HapII CCGG 6 cut(s) 20, 120, 189, 226, 352, 362
HgaI GACGC 1 cut(s) 232
HinfI GANTC 6 cut(s) 44, 284, 320, 1162, 1262, 1301
HpaII CCGG 6 cut(s) 20, 120, 189, 226, 352, 362
HphI GGTGA 4 cut(s) 307, 524, 599, 947
Hpy166II GTNNAC 2 cut(s) 315, 465
Hpy188I TCNGA 6 cut(s) 67, 109, 310, 894, 1046, 1347
Hpy188III TCNNGA 6 cut(s) 520, 547, 1175, 1230, 1298, 1396
Hpy8I GTNNAC 2 cut(s) 315, 465
HpyCH4III ACNGT 5 cut(s) 412, 776, 919, 955, 1319
HpyCH4IV ACGT 3 cut(s) 649, 786, 1207
HpyCH4V TGCA 9 cut(s) 494, 501, 574, 623, 824, 989, 1142, 1158, 1205
HpyF10VI GCNNNNNNNGC 7 cut(s) 144, 165, 274, 346, 1143, 1152, 1202
HpyF3I CTNAG 1 cut(s) 1346
HpySE526I ACGT 3 cut(s) 649, 786, 1207
Ksp22I TGATCA 2 cut(s) 7, 928
Kzo9I GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
LmnI GCTCC 6 cut(s) 335, 354, 426, 710, 733, 880
Lsp1109I GCAGC 3 cut(s) 156, 712, 1142
MabI ACCWGGT 1 cut(s) 979
MaeI CTAG 1 cut(s) 1230
MaeII ACGT 3 cut(s) 649, 786, 1207
MaeIII GTNAC 3 cut(s) 256, 512, 770
MalI GATC 9 cut(s) 9, 551, 630, 696, 891, 930, 939, 1274, 1351
MbiI CCGCTC 1 cut(s) 280
MboI GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
MboII GAAGA 2 cut(s) 776, 1121
MhlI GDGCHC 3 cut(s) 270, 431, 1297
MlyI GAGTC 4 cut(s) 293, 314, 1156, 1310
MmeI TCCRAC 3 cut(s) 90, 1069, 1316
MspI CCGG 6 cut(s) 20, 120, 189, 226, 352, 362
MspR9I CCNGG 5 cut(s) 120, 585, 780, 981, 1134
MvaI CCWGG 4 cut(s) 585, 780, 981, 1134
MvnI CGCG 2 cut(s) 243, 1018
MwoI GCNNNNNNNGC 7 cut(s) 144, 165, 274, 346, 1143, 1152, 1202
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 3 cut(s) 442, 1168, 1289
NdeI CATATG 1 cut(s) 1189
NdeII GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
NlaIV GGNNCC 2 cut(s) 193, 676
NmeAIII GCCGAG 2 cut(s) 202, 688
NmuCI GTSAC 2 cut(s) 256, 512
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 281
PciI ACATGT 1 cut(s) 459
PfeI GAWTC 2 cut(s) 44, 1262
Pfl23II CGTACG 1 cut(s) 162
PflMI CCANNNNNTGG 2 cut(s) 536, 756
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 4 cut(s) 146, 279, 727, 1157
PleI GAGTC 4 cut(s) 292, 314, 1156, 1309
PmaCI CACGTG 2 cut(s) 650, 1208
PmlI CACGTG 2 cut(s) 650, 1208
PpsI GAGTC 4 cut(s) 292, 314, 1156, 1309
Ppu21I YACGTR 2 cut(s) 650, 1208
PscI ACATGT 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 4 cut(s) 583, 778, 979, 1132
PspCI CACGTG 2 cut(s) 650, 1208
PspFI CCCAGC 2 cut(s) 345, 422
PspGI CCWGG 4 cut(s) 583, 778, 979, 1132
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 193, 676
PspPI GGNCC 6 cut(s) 38, 641, 701, 1087, 1172, 1223
PspXI VCTCGAGB 1 cut(s) 281
RsaI GTAC 3 cut(s) 77, 164, 464
RsaNI GTAC 3 cut(s) 76, 163, 463
SacI GAGCTC 1 cut(s) 431
SatI GCNGC 4 cut(s) 145, 278, 726, 1156
Sau3AI GATC 9 cut(s) 7, 549, 628, 694, 889, 928, 937, 1272, 1349
Sau96I GGNCC 6 cut(s) 38, 641, 701, 1087, 1172, 1223
SchI GAGTC 4 cut(s) 293, 314, 1156, 1310
ScrFI CCNGG 5 cut(s) 120, 585, 780, 981, 1134
SduI GDGCHC 3 cut(s) 270, 431, 1297
SexAI ACCWGGT 1 cut(s) 979
Sfr274I CTCGAG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 3 cut(s) 701, 1172, 1223
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 281, 606, 1298
SmoI CTYRAG 3 cut(s) 281, 606, 1298
SsiI CCGC 4 cut(s) 278, 439, 1016, 1137
SspMI CTAG 1 cut(s) 1230
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 5 cut(s) 118, 583, 778, 979, 1132
StyI CCWWGG 4 cut(s) 442, 731, 1168, 1289
TaaI ACNGT 5 cut(s) 412, 776, 919, 955, 1319
TaiI ACGT 3 cut(s) 652, 789, 1210
TaqI TCGA 5 cut(s) 282, 287, 323, 762, 1314
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 2 cut(s) 44, 1262
TscAI CASTG 5 cut(s) 261, 415, 472, 922, 1337
TseFI GTSAC 2 cut(s) 256, 512
TseI GCWGC 3 cut(s) 144, 725, 1155
Tsp45I GTSAC 2 cut(s) 256, 512
TspDTI ATGAA 4 cut(s) 36, 1230, 1243, 1300
TspGWI ACGGA 1 cut(s) 1113
TspRI CASTG 5 cut(s) 261, 415, 472, 922, 1337
Van91I CCANNNNNTGG 2 cut(s) 536, 756
VpaK11BI GGWCC 3 cut(s) 701, 1172, 1223
XapI RAATTY 4 cut(s) 576, 800, 833, 1079
XbaI TCTAGA 1 cut(s) 1229
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 1337
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.