Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454513.1

Orthogroup ID

OG0010004

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1749

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 848 bp

acggctcagattcctcctcctcctcctccgacctcccctaccagtccggcttccacaaccacttctcctccgaagctctccccggcgctctccccctcggccagagcaaccccctcctctgcccctacggcctctacgccgagcaactctccggcacctccttcacctccccccgcaagctcaacctccgcacctggctctaccgcgtcaagccctccgtcactcacgagcccttccagccgctccggcccagccacgggaggctcgtcagcgagttcaacgactccaacagctccaccactccgactcagctgaggtggaagccggtcgagattccggagacgccgaccgactttgtgcgggggttgtacaccgtgtgcggagctgggagctcgttcctccgccatggctttgctattcacatgtacactgcgaacaagtcgatggatgatcgtgccttttgcaatgctgatggagatttcttgatagtcccccaattaggaaggctctggatcactacagaatgcggaagattgatagtttctcctggtgaaattgctgtattacctcaaggatttagatttgcagtagatcttcctgatggcccttcacgaggttacgtagctgaggtttttggcacccattttcaactccctgatcttggcccaataggagctaatggccttgctgctccaagggattttcttgttcccacagcatggtttgaaaaaactacccgtccaggctacatcattatacaaaaatttggtggagaactttttactgcaaagcaggatttctctccatttaatgtagttgcttggcatggtaattatgctccatataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004411 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016491 GO:0016701 GO:0016702 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0051213 GO:0055114 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

HgmA

Protein Analysis

282

Amino Acids

31.05

Weight (kDa)

6.77

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54080 AT5G54080
fragaria_vesca	FvH4_3g19020 FvH4_3g19020 FvH4_3g19020
malus_domestica	MD03G1237300.v1.1 MD03G1237500.v1.1
prunus_persica	Prupe.4G172100_v2.0.a1
pyrus_communis	pycom03g18320
rosa_chinensis	RchiOBHm_Chr5g0031821
rosa_laevigata	RLG00000033349
rosa_multiflora	Rmu_co8454513.1_g000001 Rmu_sc0006847.1_g000029
rosa_roxburghii	Rroxscaffold_1G00048450
rosa_rugosa	Rorug05G0127800 Rorug05G0127900
rosa_samantha	Rh5AG222100 Rh5BG222100 Rh5CG245400 Rh5DG227000
rosa_wichuraiana	Rw5G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	154, 637
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	8 cut(s)	174, 189, 204, 241, 360, 380, 402, 527
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	763
AcyI	GRCGYC	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	370, 427
AfiI	CCNNNNNNNGG	6 cut(s)	256, 257, 499, 613, 661, 719
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	279, 649, 727
AjnI	CCWGG	3 cut(s)	193, 546, 741
AluBI	AGCT	8 cut(s)	76, 180, 293, 312, 385, 392, 625, 676
AluI	AGCT	8 cut(s)	76, 180, 293, 312, 385, 392, 625, 676
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	520
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	6 cut(s)	99, 129, 247, 603, 663, 681
ApeKI	GCWGC	1 cut(s)	688
ApoI	RAATTY	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	3 cut(s)	248, 604, 664
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	156, 562
BanI	GGYRCC	2 cut(s)	154, 637
BanII	GRGCYC	2 cut(s)	233, 394
BauI	CACGAG	2 cut(s)	226, 611
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	2 cut(s)	313, 626
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	3 cut(s)	438, 466, 595
BceAI	ACGGC	2 cut(s)	18, 144
BciT130I	CCWGG	3 cut(s)	195, 548, 743
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	89
BglI	GCCNNNNNGGC	2 cut(s)	128, 246
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	2 cut(s)	241, 689
BlsI	GCNGC	2 cut(s)	242, 690
Bme1390I	CCNGG	4 cut(s)	83, 195, 548, 743
BmgT120I	GGNCC	3 cut(s)	248, 604, 664
BmiI	GGNNCC	2 cut(s)	156, 639
BmrFI	CCNGG	4 cut(s)	83, 195, 548, 743
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
Bpu10I	CCTNAGC	2 cut(s)	313, 626
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	5 cut(s)	81, 96, 255, 405, 694
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 52, 79, 82
Bsc4I	CCNNNNNNNGG	6 cut(s)	256, 257, 499, 613, 661, 719
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	3 cut(s)	195, 548, 743
BseDI	CCNNGG	5 cut(s)	81, 96, 255, 405, 694
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	6 cut(s)	256, 257, 499, 613, 661, 719
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	4 cut(s)	20, 304, 322, 617
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	6 cut(s)	6, 9, 12, 15, 57, 106
BseXI	GCAGC	1 cut(s)	675
BseYI	CCCAGC	2 cut(s)	250, 385
Bsh1236I	CGCG	1 cut(s)	206
Bsh1285I	CGRYCG	2 cut(s)	329, 350
BshFI	GGCC	6 cut(s)	101, 131, 249, 605, 665, 683
BshNI	GGYRCC	2 cut(s)	154, 637
BsiEI	CGRYCG	2 cut(s)	329, 350
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	6 cut(s)	47, 83, 152, 246, 325, 337
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	6 cut(s)	256, 257, 499, 613, 661, 719
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	6 cut(s)	101, 131, 249, 605, 665, 683
Bsp1286I	GDGCHC	2 cut(s)	233, 394
Bsp13I	TCCGGA	1 cut(s)	336
Bsp1407I	TGTACA	2 cut(s)	368, 425
Bsp143I	GATC	4 cut(s)	450, 512, 591, 657
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	8 cut(s)	174, 189, 204, 241, 360, 380, 402, 527
BspANI	GGCC	6 cut(s)	101, 131, 249, 605, 665, 683
BspCNI	CTCAG	4 cut(s)	19, 305, 321, 618
BspEI	TCCGGA	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	156, 639
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	2 cut(s)	154, 637
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	324
BsrGI	TGTACA	2 cut(s)	368, 425
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	5 cut(s)	81, 96, 255, 405, 694
BssMI	GATC	4 cut(s)	450, 512, 591, 657
BssNI	GRCGYC	1 cut(s)	343
BssSI	CACGAG	2 cut(s)	226, 611
BssT1I	CCWWGG	2 cut(s)	405, 694
Bst2BI	CACGAG	2 cut(s)	226, 611
Bst2UI	CCWGG	3 cut(s)	195, 548, 743
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	343
BstAUI	TGTACA	2 cut(s)	368, 425
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	4 cut(s)	6, 308, 313, 626
BstDSI	CCRYGG	2 cut(s)	255, 405
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	4 cut(s)	453, 515, 594, 660
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	450, 512, 591, 657
BstMCI	CGRYCG	2 cut(s)	329, 350
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 237, 246
BstNI	CCWGG	3 cut(s)	195, 548, 743
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	4 cut(s)	81, 193, 546, 741
BstSFI	CTRYAG	1 cut(s)	518
BstSNI	TACGTA	1 cut(s)	621
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BsuRI	GGCC	6 cut(s)	101, 131, 249, 605, 665, 683
BtgI	CCRYGG	2 cut(s)	255, 405
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	248, 604, 664
CseI	GACGC	2 cut(s)	195, 351
Csp6I	GTAC	2 cut(s)	369, 426
CviAII	CATG	4 cut(s)	406, 423, 719, 826
CviQI	GTAC	2 cut(s)	369, 426
DdeI	CTNAG	4 cut(s)	6, 308, 313, 626
DpnI	GATC	4 cut(s)	452, 514, 593, 659
DpnII	GATC	4 cut(s)	450, 512, 591, 657
DraIII	CACNNNGTG	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	392
Eco105I	TACGTA	1 cut(s)	621
Eco130I	CCWWGG	2 cut(s)	405, 694
Eco24I	GRGCYC	2 cut(s)	233, 394
Eco53kI	GAGCTC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoRII	CCWGG	3 cut(s)	193, 546, 741
EcoT14I	CCWWGG	2 cut(s)	405, 694
EcoT38I	GRGCYC	2 cut(s)	233, 394
ErhI	CCWWGG	2 cut(s)	405, 694
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	4 cut(s)	409, 426, 722, 829
FaiI	YATR	8 cut(s)	407, 424, 720, 757, 827, 836, 843, 845
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	405, 422, 718, 825
FauI	CCCGC	2 cut(s)	181, 353
Fnu4HI	GCNGC	2 cut(s)	241, 689
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	2 cut(s)	233, 394
Fsp4HI	GCNGC	2 cut(s)	241, 689
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	2 cut(s)	241, 689
GsaI	CCCAGC	2 cut(s)	254, 389
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	6 cut(s)	101, 131, 249, 605, 665, 683
HapII	CCGG	6 cut(s)	47, 83, 152, 246, 325, 337
HgaI	GACGC	2 cut(s)	195, 351
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	409, 426, 722, 829
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	4 cut(s)	10, 283, 306, 333
HpaII	CCGG	6 cut(s)	47, 83, 152, 246, 325, 337
HphI	GGTGA	2 cut(s)	156, 562
Hpy166II	GTNNAC	2 cut(s)	371, 428
Hpy188I	TCNGA	4 cut(s)	9, 30, 72, 305
Hpy188III	TCNNGA	7 cut(s)	226, 330, 337, 483, 510, 598, 611
Hpy8I	GTNNAC	2 cut(s)	371, 428
HpyAV	CCTTC	4 cut(s)	171, 243, 497, 617
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	3 cut(s)	464, 586, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 237, 246
HpyF3I	CTNAG	4 cut(s)	6, 308, 313, 626
HpySE526I	ACGT	1 cut(s)	620
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	409, 426, 722, 829
HspAI	GCGC	1 cut(s)	86
Kpn2I	TCCGGA	1 cut(s)	336
Kzo9I	GATC	4 cut(s)	450, 512, 591, 657
LmnI	GCTCC	7 cut(s)	248, 298, 382, 389, 673, 696, 843
Lsp1109I	GCAGC	1 cut(s)	675
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	2 cut(s)	219, 616
MalI	GATC	4 cut(s)	452, 514, 593, 659
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	4 cut(s)	450, 512, 591, 657
MboII	GAAGA	2 cut(s)	542, 586
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	233, 394
MluCI	AATT	4 cut(s)	496, 554, 763, 831
MlyI	GAGTC	2 cut(s)	277, 300
MmeI	TCCRAC	3 cut(s)	53, 311, 328
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	6 cut(s)	47, 83, 152, 246, 325, 337
MspR9I	CCNGG	4 cut(s)	83, 195, 548, 743
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	3 cut(s)	195, 548, 743
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	128, 237, 246
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	4 cut(s)	450, 512, 591, 657
NlaIII	CATG	4 cut(s)	409, 426, 722, 829
NlaIV	GGNNCC	2 cut(s)	156, 639
NmeAIII	GCCGAG	2 cut(s)	77, 165
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	426
PciI	ACATGT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	10, 333
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	2 cut(s)	242, 690
PleI	GAGTC	2 cut(s)	277, 300
PpsI	GAGTC	2 cut(s)	277, 300
Ppu21I	YACGTR	1 cut(s)	621
PscI	ACATGT	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	193, 546, 741
PspFI	CCCAGC	2 cut(s)	250, 385
PspGI	CCWGG	3 cut(s)	193, 546, 741
PspN4I	GGNNCC	2 cut(s)	156, 639
PspPI	GGNCC	3 cut(s)	248, 604, 664
PsuI	RGATCY	1 cut(s)	591
PvuII	CAGCTG	1 cut(s)	312
RsaI	GTAC	2 cut(s)	370, 427
RsaNI	GTAC	2 cut(s)	369, 426
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	809
SatI	GCNGC	2 cut(s)	241, 689
Sau3AI	GATC	4 cut(s)	450, 512, 591, 657
Sau96I	GGNCC	3 cut(s)	248, 604, 664
SchI	GAGTC	2 cut(s)	277, 300
ScrFI	CCNGG	4 cut(s)	83, 195, 548, 743
SduI	GDGCHC	2 cut(s)	233, 394
SfcI	CTRYAG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SnaBI	TACGTA	1 cut(s)	621
Sse9I	AATT	4 cut(s)	496, 554, 763, 831
SsiI	CCGC	8 cut(s)	174, 189, 204, 241, 360, 380, 402, 527
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	4 cut(s)	81, 193, 546, 741
StyI	CCWWGG	2 cut(s)	405, 694
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	2 cut(s)	329, 442
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	4 cut(s)	496, 554, 763, 831
TatI	WGTACW	2 cut(s)	368, 425
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	10, 333
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	763
XceI	RCATGY	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.