Homogentisate 1,2-dioxygenase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G54080 AT5G54080 |
| fragaria_vesca | FvH4_3g19020 FvH4_3g19020 FvH4_3g19020 |
| malus_domestica | MD03G1237300.v1.1 MD03G1237500.v1.1 |
| prunus_persica | Prupe.4G172100_v2.0.a1 |
| pyrus_communis | pycom03g18320 |
| rosa_chinensis | RchiOBHm_Chr5g0031821 |
| rosa_laevigata | RLG00000033349 |
| rosa_multiflora | Rmu_co8454513.1_g000001 Rmu_sc0006847.1_g000029 |
| rosa_roxburghii | Rroxscaffold_1G00048450 |
| rosa_rugosa | Rorug05G0127800 Rorug05G0127900 |
| rosa_samantha | Rh5AG222100 Rh5BG222100 Rh5CG245400 Rh5DG227000 |
| rosa_wichuraiana | Rw5G020250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1391 |
| AccB1I | GGYRCC | 3 cut(s) | 191, 419, 674 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 756 |
| AccBSI | CCGCTC | 1 cut(s) | 280 |
| AccII | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| AciI | CCGC | 7 cut(s) | 241, 278, 439, 506, 564, 623, 1016 |
| AclWI | GGATC | 2 cut(s) | 557, 932 |
| AcoI | YGGCCR | 1 cut(s) | 660 |
| AcsI | RAATTY | 2 cut(s) | 576, 800 |
| AcuI | CTGAAG | 2 cut(s) | 256, 1401 |
| AcvI | CACGTG | 1 cut(s) | 1364 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AdeI | CACNNNGTG | 2 cut(s) | 414, 756 |
| AfaI | GTAC | 4 cut(s) | 77, 164, 372, 464 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 536, 650, 698, 756 |
| AflIII | ACRYGT | 2 cut(s) | 459, 1361 |
| AgsI | TTSAA | 4 cut(s) | 398, 686, 847, 1262 |
| AjnI | CCWGG | 5 cut(s) | 318, 583, 778, 979, 1132 |
| AluBI | AGCT | 8 cut(s) | 113, 125, 217, 301, 330, 349, 429, 1155 |
| AluI | AGCT | 8 cut(s) | 113, 125, 217, 301, 330, 349, 429, 1155 |
| Alw21I | GWGCWC | 2 cut(s) | 127, 431 |
| Alw26I | GTCTC | 4 cut(s) | 310, 725, 1094, 1308 |
| AlwI | GGATC | 2 cut(s) | 557, 932 |
| Ama87I | CYCGRG | 2 cut(s) | 281, 374 |
| AoxI | GGCC | 4 cut(s) | 166, 275, 640, 660 |
| ApeKI | GCWGC | 3 cut(s) | 144, 725, 1155 |
| ApoI | RAATTY | 2 cut(s) | 576, 800 |
| AspLEI | GCGC | 3 cut(s) | 422, 967, 1207 |
| AspS9I | GGNCC | 4 cut(s) | 641, 701, 1172, 1223 |
| AsuC2I | CCSGG | 2 cut(s) | 120, 424 |
| AsuII | TTCGAA | 1 cut(s) | 762 |
| AvaI | CYCGRG | 2 cut(s) | 281, 374 |
| AvaII | GGWCC | 3 cut(s) | 701, 1172, 1223 |
| BanI | GGYRCC | 3 cut(s) | 191, 419, 674 |
| BanII | GRGCYC | 4 cut(s) | 127, 270, 431, 1297 |
| BauI | CACGAG | 1 cut(s) | 263 |
| BbrPI | CACGTG | 1 cut(s) | 1364 |
| BbsI | GAAGAC | 1 cut(s) | 1389 |
| Bbv12I | GWGCWC | 2 cut(s) | 127, 431 |
| BbvI | GCAGC | 3 cut(s) | 156, 712, 1142 |
| BccI | CCATC | 5 cut(s) | 503, 632, 949, 1014, 1115 |
| BceAI | ACGGC | 2 cut(s) | 49, 181 |
| BciT130I | CCWGG | 5 cut(s) | 320, 585, 780, 981, 1134 |
| BclI | TGATCA | 1 cut(s) | 928 |
| BcnI | CCSGG | 2 cut(s) | 120, 424 |
| BcoDI | GTCTC | 4 cut(s) | 310, 725, 1094, 1308 |
| BfoI | RGCGCY | 2 cut(s) | 423, 968 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 165, 274 |
| BisI | GCNGC | 4 cut(s) | 145, 278, 726, 1156 |
| BlpI | GCTNAGC | 1 cut(s) | 1032 |
| BlsI | GCNGC | 4 cut(s) | 146, 279, 727, 1157 |
| Bme1390I | CCNGG | 7 cut(s) | 120, 320, 424, 585, 780, 981, 1134 |
| Bme18I | GGWCC | 3 cut(s) | 701, 1172, 1223 |
| BmeT110I | CYCGRG | 2 cut(s) | 281, 374 |
| BmgT120I | GGNCC | 4 cut(s) | 641, 701, 1172, 1223 |
| BmiI | GGNNCC | 3 cut(s) | 193, 421, 676 |
| BmrFI | CCNGG | 7 cut(s) | 120, 320, 424, 585, 780, 981, 1134 |
| BmsI | GCATC | 1 cut(s) | 16 |
| BpiI | GAAGAC | 1 cut(s) | 1389 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1032 |
| Bpu14I | TTCGAA | 1 cut(s) | 762 |
| BpuEI | CTTGAG | 2 cut(s) | 591, 1319 |
| BpuMI | CCSGG | 2 cut(s) | 120, 424 |
| BsaAI | YACGTR | 1 cut(s) | 1364 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaI | GGTCTC | 2 cut(s) | 725, 1094 |
| BsaJI | CCNNGG | 7 cut(s) | 118, 133, 318, 442, 663, 731, 1168 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 86, 89, 116, 119 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 536, 650, 698, 756 |
| Bse1I | ACTGG | 4 cut(s) | 73, 541, 1330, 1345 |
| BseBI | CCWGG | 5 cut(s) | 320, 585, 780, 981, 1134 |
| BseDI | CCNNGG | 7 cut(s) | 118, 133, 318, 442, 663, 731, 1168 |
| BseGI | GGATG | 1 cut(s) | 514 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 536, 650, 698, 756 |
| BseMII | CTCAG | 2 cut(s) | 359, 1023 |
| BseNI | ACTGG | 4 cut(s) | 73, 541, 1330, 1345 |
| BseRI | GAGGAG | 4 cut(s) | 43, 46, 94, 1296 |
| BseXI | GCAGC | 3 cut(s) | 156, 712, 1142 |
| Bsh1236I | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| BshFI | GGCC | 4 cut(s) | 168, 277, 642, 662 |
| BshNI | GGYRCC | 3 cut(s) | 191, 419, 674 |
| BsiHKAI | GWGCWC | 2 cut(s) | 127, 431 |
| BsiHKCI | CYCGRG | 2 cut(s) | 281, 374 |
| BsiSI | CCGG | 4 cut(s) | 120, 189, 352, 423 |
| BsiWI | CGTACG | 1 cut(s) | 162 |
| BslFI | GGGAC | 1 cut(s) | 364 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 536, 650, 698, 756 |
| BsmAI | GTCTC | 4 cut(s) | 310, 725, 1094, 1308 |
| BsmBI | CGTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 364 |
| BsmI | GAATGC | 2 cut(s) | 566, 1381 |
| BsnI | GGCC | 4 cut(s) | 168, 277, 642, 662 |
| Bso31I | GGTCTC | 2 cut(s) | 725, 1094 |
| BsoBI | CYCGRG | 2 cut(s) | 281, 374 |
| Bsp119I | TTCGAA | 1 cut(s) | 762 |
| Bsp1286I | GDGCHC | 4 cut(s) | 127, 270, 431, 1297 |
| Bsp1407I | TGTACA | 1 cut(s) | 462 |
| Bsp143I | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1032 |
| Bsp19I | CCATGG | 1 cut(s) | 1168 |
| BspACI | CCGC | 7 cut(s) | 241, 278, 439, 506, 564, 623, 1016 |
| BspANI | GGCC | 4 cut(s) | 168, 277, 642, 662 |
| BspCNI | CTCAG | 2 cut(s) | 358, 1024 |
| BspFNI | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| BspHI | TCATGA | 1 cut(s) | 1318 |
| BspLI | GGNNCC | 3 cut(s) | 193, 421, 676 |
| BspPI | GGATC | 2 cut(s) | 557, 932 |
| BspT104I | TTCGAA | 1 cut(s) | 762 |
| BspT107I | GGYRCC | 3 cut(s) | 191, 419, 674 |
| BspTNI | GGTCTC | 2 cut(s) | 725, 1094 |
| BsrBI | CCGCTC | 1 cut(s) | 280 |
| BsrGI | TGTACA | 1 cut(s) | 462 |
| BsrI | ACTGG | 4 cut(s) | 73, 541, 1330, 1345 |
| BssECI | CCNNGG | 7 cut(s) | 118, 133, 318, 442, 663, 731, 1168 |
| BssMI | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| BssSI | CACGAG | 1 cut(s) | 263 |
| BssT1I | CCWWGG | 2 cut(s) | 731, 1168 |
| Bst2BI | CACGAG | 1 cut(s) | 263 |
| Bst2UI | CCWGG | 5 cut(s) | 320, 585, 780, 981, 1134 |
| Bst4CI | ACNGT | 5 cut(s) | 412, 446, 919, 955, 1100 |
| Bst6I | CTCTTC | 1 cut(s) | 759 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstAUI | TGTACA | 1 cut(s) | 462 |
| BstBAI | YACGTR | 1 cut(s) | 1364 |
| BstBI | TTCGAA | 1 cut(s) | 762 |
| BstC8I | GCNNGC | 2 cut(s) | 215, 1144 |
| BstDEI | CTNAG | 2 cut(s) | 345, 1032 |
| BstDSI | CCRYGG | 3 cut(s) | 133, 442, 1168 |
| BstF5I | GGATG | 1 cut(s) | 514 |
| BstFNI | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| BstH2I | RGCGCY | 2 cut(s) | 423, 968 |
| BstHHI | GCGC | 3 cut(s) | 422, 967, 1207 |
| BstKTI | GATC | 8 cut(s) | 230, 525, 552, 631, 697, 892, 931, 940 |
| BstMAI | GTCTC | 4 cut(s) | 310, 725, 1094, 1308 |
| BstMBI | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 165, 274, 283, 346, 426, 1152, 1202 |
| BstNI | CCWGG | 5 cut(s) | 320, 585, 780, 981, 1134 |
| BstNSI | RCATGY | 1 cut(s) | 463 |
| BstSCI | CCNGG | 7 cut(s) | 118, 318, 422, 583, 778, 979, 1132 |
| BstUI | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| BstV1I | GCAGC | 3 cut(s) | 156, 712, 1142 |
| BstV2I | GAAGAC | 1 cut(s) | 1389 |
| BsuRI | GGCC | 4 cut(s) | 168, 277, 642, 662 |
| BtgI | CCRYGG | 3 cut(s) | 133, 442, 1168 |
| BtgZI | GCGATG | 1 cut(s) | 1033 |
| BtsCI | GGATG | 1 cut(s) | 514 |
| BtsI | GCAGTG | 2 cut(s) | 465, 750 |
| BtsIMutI | CAGTG | 5 cut(s) | 465, 750, 915, 1236, 1337 |
| Cac8I | GCNNGC | 2 cut(s) | 215, 1144 |
| CciI | TCATGA | 1 cut(s) | 1318 |
| CfoI | GCGC | 3 cut(s) | 422, 967, 1207 |
| Cfr13I | GGNCC | 4 cut(s) | 641, 701, 1172, 1223 |
| CseI | GACGC | 1 cut(s) | 232 |
| CsiI | ACCWGGT | 1 cut(s) | 979 |
| Csp6I | GTAC | 4 cut(s) | 76, 163, 371, 463 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 373, 408 |
| CviAII | CATG | 8 cut(s) | 231, 460, 863, 932, 1159, 1169, 1290, 1319 |
| CviQI | GTAC | 4 cut(s) | 76, 163, 371, 463 |
| DdeI | CTNAG | 2 cut(s) | 345, 1032 |
| DinI | GGCGCC | 1 cut(s) | 421 |
| DpnI | GATC | 8 cut(s) | 229, 524, 551, 630, 696, 891, 930, 939 |
| DpnII | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| DraIII | CACNNNGTG | 2 cut(s) | 414, 756 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1391 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1391 |
| EaeI | YGGCCR | 1 cut(s) | 660 |
| Eam1104I | CTCTTC | 1 cut(s) | 759 |
| EarI | CTCTTC | 1 cut(s) | 759 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Ecl136II | GAGCTC | 2 cut(s) | 125, 429 |
| Eco130I | CCWWGG | 2 cut(s) | 731, 1168 |
| Eco24I | GRGCYC | 4 cut(s) | 127, 270, 431, 1297 |
| Eco31I | GGTCTC | 2 cut(s) | 725, 1094 |
| Eco47I | GGWCC | 3 cut(s) | 701, 1172, 1223 |
| Eco53kI | GAGCTC | 2 cut(s) | 125, 429 |
| Eco57I | CTGAAG | 2 cut(s) | 256, 1401 |
| Eco72I | CACGTG | 1 cut(s) | 1364 |
| Eco88I | CYCGRG | 2 cut(s) | 281, 374 |
| EcoICRI | GAGCTC | 2 cut(s) | 125, 429 |
| EcoRII | CCWGG | 5 cut(s) | 318, 583, 778, 979, 1132 |
| EcoT14I | CCWWGG | 2 cut(s) | 731, 1168 |
| EcoT38I | GRGCYC | 4 cut(s) | 127, 270, 431, 1297 |
| EgeI | GGCGCC | 1 cut(s) | 421 |
| EheI | GGCGCC | 1 cut(s) | 421 |
| ErhI | CCWWGG | 2 cut(s) | 731, 1168 |
| Esp3I | CGTCTC | 1 cut(s) | 310 |
| FaeI | CATG | 8 cut(s) | 234, 463, 866, 935, 1162, 1172, 1293, 1322 |
| FaqI | GGGAC | 1 cut(s) | 364 |
| FatI | CATG | 8 cut(s) | 230, 459, 862, 931, 1158, 1168, 1289, 1318 |
| FauNDI | CATATG | 1 cut(s) | 1189 |
| FbaI | TGATCA | 1 cut(s) | 928 |
| Fnu4HI | GCNGC | 4 cut(s) | 145, 278, 726, 1156 |
| FokI | GGATG | 1 cut(s) | 521 |
| FriOI | GRGCYC | 4 cut(s) | 127, 270, 431, 1297 |
| Fsp4HI | GCNGC | 4 cut(s) | 145, 278, 726, 1156 |
| GlaI | GCGC | 3 cut(s) | 421, 966, 1206 |
| GluI | GCNGC | 4 cut(s) | 145, 278, 726, 1156 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 2 cut(s) | 423, 968 |
| HaeIII | GGCC | 4 cut(s) | 168, 277, 642, 662 |
| HapII | CCGG | 4 cut(s) | 120, 189, 352, 423 |
| HgaI | GACGC | 1 cut(s) | 232 |
| HhaI | GCGC | 3 cut(s) | 422, 967, 1207 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 8 cut(s) | 234, 463, 866, 935, 1162, 1172, 1293, 1322 |
| Hin6I | GCGC | 3 cut(s) | 420, 965, 1205 |
| HinP1I | GCGC | 3 cut(s) | 420, 965, 1205 |
| HinfI | GANTC | 6 cut(s) | 343, 377, 1162, 1233, 1262, 1301 |
| HpaII | CCGG | 4 cut(s) | 120, 189, 352, 423 |
| Hpy166II | GTNNAC | 4 cut(s) | 315, 408, 465, 812 |
| Hpy188I | TCNGA | 8 cut(s) | 19, 67, 109, 227, 310, 894, 1046, 1232 |
| Hpy188III | TCNNGA | 7 cut(s) | 520, 547, 774, 1175, 1298, 1319, 1396 |
| Hpy8I | GTNNAC | 4 cut(s) | 315, 408, 465, 812 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyCH4III | ACNGT | 5 cut(s) | 412, 446, 919, 955, 1100 |
| HpyCH4IV | ACGT | 2 cut(s) | 899, 1363 |
| HpyCH4V | TGCA | 7 cut(s) | 501, 574, 824, 989, 1142, 1158, 1287 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 165, 274, 283, 346, 426, 1152, 1202 |
| HpyF3I | CTNAG | 2 cut(s) | 345, 1032 |
| HpySE526I | ACGT | 2 cut(s) | 899, 1363 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 8 cut(s) | 234, 463, 866, 935, 1162, 1172, 1293, 1322 |
| HspAI | GCGC | 3 cut(s) | 420, 965, 1205 |
| KasI | GGCGCC | 1 cut(s) | 419 |
| Ksp22I | TGATCA | 1 cut(s) | 928 |
| Kzo9I | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| LmnI | GCTCC | 7 cut(s) | 4, 122, 335, 354, 426, 733, 880 |
| Lsp1109I | GCAGC | 3 cut(s) | 156, 712, 1142 |
| LweI | GCATC | 1 cut(s) | 16 |
| MabI | ACCWGGT | 1 cut(s) | 979 |
| MaeII | ACGT | 2 cut(s) | 899, 1363 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 8 cut(s) | 229, 524, 551, 630, 696, 891, 930, 939 |
| MbiI | CCGCTC | 1 cut(s) | 280 |
| MboI | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| MboII | GAAGA | 3 cut(s) | 776, 1121, 1394 |
| MfeI | CAATTG | 1 cut(s) | 705 |
| MhlI | GDGCHC | 4 cut(s) | 127, 270, 431, 1297 |
| MluCI | AATT | 7 cut(s) | 487, 576, 591, 705, 800, 868, 1066 |
| Mly113I | GGCGCC | 1 cut(s) | 420 |
| MlyI | GAGTC | 4 cut(s) | 337, 386, 1156, 1310 |
| MmeI | TCCRAC | 1 cut(s) | 1069 |
| MseI | TTAA | 3 cut(s) | 912, 1271, 1414 |
| MspI | CCGG | 4 cut(s) | 120, 189, 352, 423 |
| MspR9I | CCNGG | 7 cut(s) | 120, 320, 424, 585, 780, 981, 1134 |
| MunI | CAATTG | 1 cut(s) | 705 |
| Mva1269I | GAATGC | 2 cut(s) | 566, 1381 |
| MvaI | CCWGG | 5 cut(s) | 320, 585, 780, 981, 1134 |
| MvnI | CGCG | 5 cut(s) | 243, 506, 649, 1018, 1207 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 165, 274, 283, 346, 426, 1152, 1202 |
| NarI | GGCGCC | 1 cut(s) | 420 |
| NciI | CCSGG | 2 cut(s) | 120, 424 |
| NcoI | CCATGG | 1 cut(s) | 1168 |
| NdeI | CATATG | 1 cut(s) | 1189 |
| NdeII | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| NlaIII | CATG | 8 cut(s) | 234, 463, 866, 935, 1162, 1172, 1293, 1322 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 421, 676 |
| NmeAIII | GCCGAG | 2 cut(s) | 312, 688 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NspI | RCATGY | 1 cut(s) | 463 |
| NspV | TTCGAA | 1 cut(s) | 762 |
| PaeR7I | CTCGAG | 1 cut(s) | 281 |
| PagI | TCATGA | 1 cut(s) | 1318 |
| PciI | ACATGT | 1 cut(s) | 459 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 372, 510 |
| PctI | GAATGC | 2 cut(s) | 566, 1381 |
| PfeI | GAWTC | 2 cut(s) | 1233, 1262 |
| Pfl23II | CGTACG | 1 cut(s) | 162 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 756 |
| PkrI | GCNGC | 4 cut(s) | 146, 279, 727, 1157 |
| PleI | GAGTC | 4 cut(s) | 337, 385, 1156, 1309 |
| PluTI | GGCGCC | 1 cut(s) | 423 |
| PmaCI | CACGTG | 1 cut(s) | 1364 |
| PmlI | CACGTG | 1 cut(s) | 1364 |
| PpsI | GAGTC | 4 cut(s) | 337, 385, 1156, 1309 |
| Ppu21I | YACGTR | 1 cut(s) | 1364 |
| PscI | ACATGT | 1 cut(s) | 459 |
| Psp124BI | GAGCTC | 2 cut(s) | 127, 431 |
| Psp6I | CCWGG | 5 cut(s) | 318, 583, 778, 979, 1132 |
| PspCI | CACGTG | 1 cut(s) | 1364 |
| PspGI | CCWGG | 5 cut(s) | 318, 583, 778, 979, 1132 |
| PspLI | CGTACG | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 421, 676 |
| PspPI | GGNCC | 4 cut(s) | 641, 701, 1172, 1223 |
| PspXI | VCTCGAGB | 1 cut(s) | 281 |
| RsaI | GTAC | 4 cut(s) | 77, 164, 372, 464 |
| RsaNI | GTAC | 4 cut(s) | 76, 163, 371, 463 |
| SacI | GAGCTC | 2 cut(s) | 127, 431 |
| SaqAI | TTAA | 3 cut(s) | 912, 1271, 1414 |
| SatI | GCNGC | 4 cut(s) | 145, 278, 726, 1156 |
| Sau3AI | GATC | 8 cut(s) | 227, 522, 549, 628, 694, 889, 928, 937 |
| Sau96I | GGNCC | 4 cut(s) | 641, 701, 1172, 1223 |
| SchI | GAGTC | 4 cut(s) | 337, 386, 1156, 1310 |
| ScrFI | CCNGG | 7 cut(s) | 120, 320, 424, 585, 780, 981, 1134 |
| SduI | GDGCHC | 4 cut(s) | 127, 270, 431, 1297 |
| SexAI | ACCWGGT | 1 cut(s) | 979 |
| SfaNI | GCATC | 1 cut(s) | 16 |
| SfoI | GGCGCC | 1 cut(s) | 421 |
| Sfr274I | CTCGAG | 1 cut(s) | 281 |
| SfuI | TTCGAA | 1 cut(s) | 762 |
| SinI | GGWCC | 3 cut(s) | 701, 1172, 1223 |
| SlaI | CTCGAG | 1 cut(s) | 281 |
| SmlI | CTYRAG | 3 cut(s) | 281, 606, 1298 |
| SmoI | CTYRAG | 3 cut(s) | 281, 606, 1298 |
| Sse9I | AATT | 7 cut(s) | 487, 576, 591, 705, 800, 868, 1066 |
| SsiI | CCGC | 7 cut(s) | 241, 278, 439, 506, 564, 623, 1016 |
| SspDI | GGCGCC | 1 cut(s) | 419 |
| SstI | GAGCTC | 2 cut(s) | 127, 431 |
| StyD4I | CCNGG | 7 cut(s) | 118, 318, 422, 583, 778, 979, 1132 |
| StyI | CCWWGG | 2 cut(s) | 731, 1168 |
| TaaI | ACNGT | 5 cut(s) | 412, 446, 919, 955, 1100 |
| TaiI | ACGT | 2 cut(s) | 902, 1366 |
| TaqI | TCGA | 3 cut(s) | 282, 366, 762 |
| TasI | AATT | 7 cut(s) | 487, 576, 591, 705, 800, 868, 1066 |
| TatI | WGTACW | 1 cut(s) | 462 |
| TauI | GCSGC | 1 cut(s) | 280 |
| TfiI | GAWTC | 2 cut(s) | 1233, 1262 |
| Tru1I | TTAA | 3 cut(s) | 912, 1271, 1414 |
| Tru9I | TTAA | 3 cut(s) | 912, 1271, 1414 |
| TscAI | CASTG | 5 cut(s) | 472, 757, 922, 1243, 1337 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 3 cut(s) | 144, 725, 1155 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 2 cut(s) | 1139, 1307 |
| TspGWI | ACGGA | 3 cut(s) | 150, 244, 1401 |
| TspRI | CASTG | 5 cut(s) | 472, 757, 922, 1243, 1337 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 756 |
| VpaK11BI | GGWCC | 3 cut(s) | 701, 1172, 1223 |
| XapI | RAATTY | 2 cut(s) | 576, 800 |
| XceI | RCATGY | 1 cut(s) | 463 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 478, 1337 |
| XhoI | CTCGAG | 1 cut(s) | 281 |