MD03G1288700.v1.1

Blue-light photoreceptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
36727764 .. 36730398
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1288700.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGACACCAACTCCCAAATCCCAGAAAACCCAGAATCCAAATCGCAGGAGGAACAAAACCCACTTGCCATTGTGCCTTCCGCCGCCGCATTTCCTCCATTCGCCACCGCCTCCCTTTCACTTTCTCTCTCTACAATTCTCCCCGCCCACTTCTTCCAGCAACCCAAAGTTTCCACCTTGTTTTCTTCCCAGCCGACCAAGGTCAAGGTCCCCACGCAAGCATCGTCCCTGACCCATCTCTCTCTCTCCACGGCTAATGTAACTCCGCCCAAGCTCTCCTTCAAGTCCACCATCTCCGCCAACCCTCTGCAGAGCCCCCTCTCTTTGGGTCCGCGCCGCCCCCTCGACCCCTCCAATGGGGCCGCAATCCGTCGAGCTTCCATTGTCTGGTTCCGAAACGATTTACGAGTCCACGACAACGAGTGCCTCAACTCGGCCAATAACGAGTCCGTATCGGTCTTGCCCGTCTACTGCTTCGATCCGAAGGACTACGGAAAATCCTCTTCTGGGTTCGATAAGACAGGCTCGTACCGGGCGTCGTTCTTGGTCGAATCGGTGGCGGACCTCCGGAAGAATCTCCAGGCGAGAGGGTCCGATCTGGTGGTCAGAATCGGGAAGCCCGAGACGGTTTTGGTGGAGCTGGCGAAGGCGATCGGCGCTGACGCCATTTATGCGCACAGAGAGGTTTCGCGCGACGAGGTTAAGGAGGAGGAGAAGATTGAGGCGGCGTTGAAGGAGGAGAATGTGGAGGTCAAGTACTTTTGGGGAAGCACTCTGTACCACGCGGAGGATTTGCCGTTTAAGTTGGAGGATATGCCGACGACATACGGCGACTTCAGGGAGAAGGTGAAGGGATTGGAGGTGAGGAAGACGATTGAGGCTTTGGATCAGATGAAGGGGCTGCCGTCTCGCGGCGACGTGGAGCCTGGTGATATTCCAACATTGATGGACTTGGGGCTTAATCCGTCTGCTACTGCGTCTCAGGATGGAAGGCCTGCTGCCATTGCTTCCGCGGTGGGAGGGGAAACTGAAGCCCTAGAAAGGCTAAAAAAGTATACTGCTGAGTGCCAAGCACAGCCACCGAAGGTGGGTAAAGATGGAAGTCATGATAGCATCTCTGGTGCCAACTTTTCGTGCAAAGTCTCGCCATGGTTGGTCTTGGGATGCCTTTCTCCTCGCAGTATGTTTGATGAGCTAAAGAAAACGGCTAGCAGAACCATTTCTGCTTCATCAAACCGAAATGATGACGGTGGCAGTGGAATGAACTGGTTGATGTTTGAGTTACTGTGGAGGGATTTCTTCAGATTTGTCACTTGCAGTTCTGCAAAGAAACAGCTCAACGCTGCTCCAGCCACAGCATCTACGGGTGCCCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

49.79

Weight (kDa)

6.16

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 127 - 285 3.1e-45 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014144)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 675
AccB1I GGYRCC 2 cut(s) 1121, 1367
AccB7I CCANNNNNTGG 1 cut(s) 387
AccI GTMKAC 2 cut(s) 468, 1055
AccII CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
AccIII TCCGGA 1 cut(s) 567
AclWI GGATC 2 cut(s) 473, 894
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 3 cut(s) 820, 1050, 1285
AcyI GRCGYC 2 cut(s) 536, 663
AfaI GTAC 3 cut(s) 530, 758, 779
AgsI TTSAA 2 cut(s) 283, 733
AjiI CACGTC 1 cut(s) 919
AjnI CCWGG 2 cut(s) 579, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 5 cut(s) 274, 377, 640, 1195, 1336
AluI AGCT 5 cut(s) 274, 377, 640, 1195, 1336
Alw26I GTCTC 4 cut(s) 617, 912, 984, 1147
AlwI GGATC 2 cut(s) 473, 894
Ama87I CYCGRG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 3 cut(s) 360, 435, 992
ApeKI GCWGC 3 cut(s) 901, 998, 1343
Asp700I GAANNNNTTC 1 cut(s) 1219
AspLEI GCGC 4 cut(s) 336, 659, 676, 693
AspS9I GGNCC 5 cut(s) 208, 329, 360, 562, 591
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 859, 874, 941
AsuNHI GCTAGC 1 cut(s) 1208
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 4 cut(s) 208, 329, 562, 591
BaeGI GKGCMC 1 cut(s) 1372
BanI GGYRCC 2 cut(s) 1121, 1367
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 875
BbvI GCAGC 3 cut(s) 888, 985, 1330
BccI CCATC 5 cut(s) 243, 299, 940, 980, 1091
BceAI ACGGC 5 cut(s) 267, 781, 844, 889, 1221
BciT130I CCWGG 2 cut(s) 581, 927
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 4 cut(s) 617, 912, 984, 1147
BfaI CTAG 2 cut(s) 1037, 1209
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 660
BisI GCNGC 9 cut(s) 84, 87, 337, 363, 726, 902, 913, 999, 1344
BlsI GCNGC 9 cut(s) 85, 88, 338, 364, 727, 903, 914, 1000, 1345
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 3 cut(s) 533, 581, 927
Bme18I GGWCC 4 cut(s) 208, 329, 562, 591
BmeT110I CYCGRG 1 cut(s) 620
BmgBI CACGTC 1 cut(s) 919
BmgT120I GGNCC 5 cut(s) 208, 329, 360, 562, 591
BmiI GGNNCC 8 cut(s) 210, 330, 361, 392, 592, 924, 1123, 1369
BmrFI CCNGG 3 cut(s) 533, 581, 927
BmsI GCATC 4 cut(s) 230, 1122, 1154, 1367
BmtI GCTAGC 1 cut(s) 1212
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 875
BpmI CTGGAG 2 cut(s) 563, 1332
BpuMI CCSGG 1 cut(s) 533
BsaHI GRCGYC 2 cut(s) 536, 663
BsaJI CCNNGG 4 cut(s) 198, 249, 1011, 1148
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 3 cut(s) 26, 740, 770
Bse1I ACTGG 1 cut(s) 1271
Bse3DI GCAATG 1 cut(s) 1002
BseAI TCCGGA 1 cut(s) 567
BseBI CCWGG 2 cut(s) 581, 927
BseDI CCNNGG 4 cut(s) 198, 249, 1011, 1148
BseGI GGATG 2 cut(s) 991, 1169
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 995, 1053
BseNI ACTGG 1 cut(s) 1271
BseRI GAGGAG 4 cut(s) 722, 725, 752, 1164
BseSI GKGCMC 1 cut(s) 1372
BseXI GCAGC 3 cut(s) 888, 985, 1330
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 3 cut(s) 362, 437, 994
BshNI GGYRCC 2 cut(s) 1121, 1367
BsiEI CGRYCG 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 532, 568
BslFI GGGAC 2 cut(s) 194, 211
BsmAI GTCTC 4 cut(s) 617, 912, 984, 1147
BsmBI CGTCTC 3 cut(s) 617, 912, 984
BsmFI GGGAC 2 cut(s) 194, 211
BsnI GGCC 3 cut(s) 362, 437, 994
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 317, 1372
Bsp13I TCCGGA 1 cut(s) 567
Bsp143I GATC 4 cut(s) 478, 595, 651, 886
Bsp19I CCATGG 1 cut(s) 1148
BspANI GGCC 3 cut(s) 362, 437, 994
BspCNI CTCAG 2 cut(s) 994, 1054
BspEI TCCGGA 1 cut(s) 567
BspFNI CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
BspHI TCATGA 1 cut(s) 1105
BspLI GGNNCC 8 cut(s) 210, 330, 361, 392, 592, 924, 1123, 1369
BspMAI CTGCAG 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 1212
BspPI GGATC 2 cut(s) 473, 894
BspT107I GGYRCC 2 cut(s) 1121, 1367
BsrDI GCAATG 1 cut(s) 1002
BsrI ACTGG 1 cut(s) 1271
BssECI CCNNGG 4 cut(s) 198, 249, 1011, 1148
BssMI GATC 4 cut(s) 478, 595, 651, 886
BssNAI GTATAC 1 cut(s) 1056
BssNI GRCGYC 2 cut(s) 536, 663
BssT1I CCWWGG 2 cut(s) 198, 1148
Bst1107I GTATAC 1 cut(s) 1056
Bst2UI CCWGG 2 cut(s) 581, 927
Bst4CI ACNGT 3 cut(s) 628, 1250, 1287
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 2 cut(s) 536, 663
BstC8I GCNNGC 4 cut(s) 219, 642, 996, 1210
BstDEI CTNAG 2 cut(s) 981, 1062
BstDSI CCRYGG 3 cut(s) 249, 1011, 1148
BstF5I GGATG 2 cut(s) 991, 1169
BstFNI CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 4 cut(s) 336, 659, 676, 693
BstKTI GATC 4 cut(s) 481, 598, 654, 889
BstMAI GTCTC 4 cut(s) 617, 912, 984, 1147
BstMBI GATC 4 cut(s) 478, 595, 651, 886
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 4 cut(s) 656, 671, 1004, 1349
BstNI CCWGG 2 cut(s) 581, 927
BstPAI GACNNNNGTC 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 531, 579, 925
BstSFI CTRYAG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 1372
BstUI CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
BstV1I GCAGC 3 cut(s) 888, 985, 1330
BstV2I GAAGAC 1 cut(s) 875
BstZ17I GTATAC 1 cut(s) 1056
BsuRI GGCC 3 cut(s) 362, 437, 994
BtgI CCRYGG 3 cut(s) 249, 1011, 1148
BtrI CACGTC 1 cut(s) 919
BtsCI GGATG 2 cut(s) 991, 1169
BtsI GCAGTG 1 cut(s) 1261
BtsIMutI CAGTG 1 cut(s) 1261
Cac8I GCNNGC 4 cut(s) 219, 642, 996, 1210
CciI TCATGA 1 cut(s) 1105
CfoI GCGC 4 cut(s) 336, 659, 676, 693
Cfr13I GGNCC 5 cut(s) 208, 329, 360, 562, 591
Cfr42I CCGCGG 1 cut(s) 1014
CseI GACGC 3 cut(s) 525, 671, 966
Csp6I GTAC 3 cut(s) 529, 757, 778
CviAII CATG 2 cut(s) 1106, 1149
CviQI GTAC 3 cut(s) 529, 757, 778
DdeI CTNAG 2 cut(s) 981, 1062
DpnI GATC 4 cut(s) 480, 597, 653, 888
DpnII GATC 4 cut(s) 478, 595, 651, 886
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EciI GGCGGA 4 cut(s) 70, 255, 286, 575
Eco130I CCWWGG 2 cut(s) 198, 1148
Eco147I AGGCCT 1 cut(s) 994
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 4 cut(s) 208, 329, 562, 591
Eco57I CTGAAG 3 cut(s) 820, 1050, 1285
Eco88I CYCGRG 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 579, 925
EcoT14I CCWWGG 2 cut(s) 198, 1148
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 198, 1148
Esp3I CGTCTC 3 cut(s) 617, 912, 984
FaeI CATG 2 cut(s) 1109, 1152
FaiI YATR 7 cut(s) 672, 815, 826, 1056, 1107, 1150, 1184
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 2 cut(s) 194, 211
FatI CATG 2 cut(s) 1105, 1148
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 2 cut(s) 468, 1055
Fnu4HI GCNGC 9 cut(s) 84, 87, 337, 363, 726, 902, 913, 999, 1344
FokI GGATG 2 cut(s) 998, 1176
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 9 cut(s) 84, 87, 337, 363, 726, 902, 913, 999, 1344
FspAI RTGCGCAY 1 cut(s) 675
FspBI CTAG 2 cut(s) 1037, 1209
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 4 cut(s) 335, 658, 675, 692
GluI GCNGC 9 cut(s) 84, 87, 337, 363, 726, 902, 913, 999, 1344
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 2 cut(s) 563, 1332
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 3 cut(s) 362, 437, 994
HapII CCGG 2 cut(s) 532, 568
HgaI GACGC 3 cut(s) 525, 671, 966
HhaI GCGC 4 cut(s) 336, 659, 676, 693
Hin1I GRCGYC 2 cut(s) 536, 663
Hin1II CATG 2 cut(s) 1109, 1152
Hin6I GCGC 4 cut(s) 334, 657, 674, 691
HinP1I GCGC 4 cut(s) 334, 657, 674, 691
HinfI GANTC 6 cut(s) 35, 408, 446, 551, 574, 609
HpaII CCGG 2 cut(s) 532, 568
HphI GGTGA 3 cut(s) 859, 874, 941
Hpy166II GTNNAC 4 cut(s) 288, 412, 469, 1056
Hpy188I TCNGA 6 cut(s) 395, 483, 595, 608, 891, 1304
Hpy188III TCNNGA 4 cut(s) 568, 613, 983, 1106
Hpy8I GTNNAC 4 cut(s) 288, 412, 469, 1056
Hpy99I CGWCG 5 cut(s) 375, 541, 698, 823, 920
HpyCH4III ACNGT 3 cut(s) 628, 1250, 1287
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 4 cut(s) 310, 1137, 1317, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 656, 671, 1004, 1349
HpyF3I CTNAG 2 cut(s) 981, 1062
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 2 cut(s) 536, 663
Hsp92II CATG 2 cut(s) 1109, 1152
HspAI GCGC 4 cut(s) 334, 657, 674, 691
Kpn2I TCCGGA 1 cut(s) 567
KspI CCGCGG 1 cut(s) 1014
Kzo9I GATC 4 cut(s) 478, 595, 651, 886
LmnI GCTCC 3 cut(s) 637, 922, 1351
Lsp1109I GCAGC 3 cut(s) 888, 985, 1330
LweI GCATC 4 cut(s) 230, 1122, 1154, 1367
MaeI CTAG 2 cut(s) 1037, 1209
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 3 cut(s) 259, 1281, 1309
MalI GATC 4 cut(s) 480, 597, 653, 888
MboI GATC 4 cut(s) 478, 595, 651, 886
MboII GAAGA 7 cut(s) 145, 177, 495, 583, 727, 880, 1291
MhlI GDGCHC 2 cut(s) 317, 1372
MluCI AATT 1 cut(s) 135
MlyI GAGTC 2 cut(s) 417, 455
MmeI TCCRAC 2 cut(s) 786, 962
MroI TCCGGA 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 1219
MseI TTAA 4 cut(s) 702, 801, 960, 1378
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 2 cut(s) 532, 568
MspR9I CCNGG 3 cut(s) 533, 581, 927
MvaI CCWGG 2 cut(s) 581, 927
MvnI CGCG 6 cut(s) 334, 691, 693, 785, 912, 1013
MwoI GCNNNNNNNGC 4 cut(s) 656, 671, 1004, 1349
NciI CCSGG 1 cut(s) 533
NcoI CCATGG 1 cut(s) 1148
NdeII GATC 4 cut(s) 478, 595, 651, 886
NheI GCTAGC 1 cut(s) 1208
NlaIII CATG 2 cut(s) 1109, 1152
NlaIV GGNNCC 8 cut(s) 210, 330, 361, 392, 592, 924, 1123, 1369
NmeAIII GCCGAG 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 1309
NsbI TGCGCA 1 cut(s) 675
PagI TCATGA 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 994
PcsI WCGNNNNNNNCGW 3 cut(s) 221, 533, 618
PdmI GAANNNNTTC 1 cut(s) 1219
PfeI GAWTC 4 cut(s) 35, 551, 574, 609
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 9 cut(s) 85, 88, 338, 364, 727, 903, 914, 1000, 1345
Ple19I CGATCG 1 cut(s) 654
PleI GAGTC 2 cut(s) 416, 454
PpsI GAGTC 2 cut(s) 416, 454
PpuMI RGGWCCY 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 579, 925
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 2 cut(s) 579, 925
PspN4I GGNNCC 8 cut(s) 210, 330, 361, 392, 592, 924, 1123, 1369
PspPI GGNCC 5 cut(s) 208, 329, 360, 562, 591
PspPPI RGGWCCY 1 cut(s) 208
PstI CTGCAG 1 cut(s) 312
PvuI CGATCG 1 cut(s) 654
RsaI GTAC 3 cut(s) 530, 758, 779
RsaNI GTAC 3 cut(s) 529, 757, 778
SacII CCGCGG 1 cut(s) 1014
SaqAI TTAA 4 cut(s) 702, 801, 960, 1378
SatI GCNGC 9 cut(s) 84, 87, 337, 363, 726, 902, 913, 999, 1344
Sau3AI GATC 4 cut(s) 478, 595, 651, 886
Sau96I GGNCC 5 cut(s) 208, 329, 360, 562, 591
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 2 cut(s) 417, 455
ScrFI CCNGG 3 cut(s) 533, 581, 927
SduI GDGCHC 2 cut(s) 317, 1372
SfaNI GCATC 4 cut(s) 230, 1122, 1154, 1367
SfcI CTRYAG 1 cut(s) 308
Sfr303I CCGCGG 1 cut(s) 1014
SgrBI CCGCGG 1 cut(s) 1014
SinI GGWCC 4 cut(s) 208, 329, 562, 591
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 994
SspMI CTAG 2 cut(s) 1037, 1209
StuI AGGCCT 1 cut(s) 994
StyD4I CCNGG 3 cut(s) 531, 579, 925
StyI CCWWGG 2 cut(s) 198, 1148
TaaI ACNGT 3 cut(s) 628, 1250, 1287
TaiI ACGT 1 cut(s) 921
TaqI TCGA 5 cut(s) 345, 373, 477, 513, 549
TaqII GACCGA 1 cut(s) 445
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 756
TauI GCSGC 6 cut(s) 86, 89, 339, 365, 728, 915
TfiI GAWTC 4 cut(s) 35, 551, 574, 609
Tru1I TTAA 4 cut(s) 702, 801, 960, 1378
Tru9I TTAA 4 cut(s) 702, 801, 960, 1378
TscAI CASTG 1 cut(s) 1261
TseFI GTSAC 1 cut(s) 1309
TseI GCWGC 3 cut(s) 901, 998, 1343
Tsp45I GTSAC 1 cut(s) 1309
TspDTI ATGAA 3 cut(s) 908, 1218, 1277
TspGWI ACGGA 4 cut(s) 359, 439, 507, 954
TspRI CASTG 1 cut(s) 1261
Van91I CCANNNNNTGG 1 cut(s) 387
VpaK11BI GGWCC 4 cut(s) 208, 329, 562, 591
XmiI GTMKAC 2 cut(s) 468, 1055
XmnI GAANNNNTTC 1 cut(s) 1219
XspI CTAG 2 cut(s) 1037, 1209
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.