Rw6G030830

Blue-light photoreceptor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
54897568 .. 54900503
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030830.1

Sequence Viewer

Length: 1395 bp
ATGGACCCCAATTCCCAAATCTCAGAGAACCCAGAATCATCAGAGGAGCAACAACAACAGCAACAAAACCCACTGGCCCTTCTCCTCCCTTCTTCTTCTTCTTCTCCATTCGCCACCGCTTCACTCTCACTCTCCCTGGCCTCAATCCTCCCGACCCACTTTTTCCAACAACCCAAAGTGGCCACCCTCTTCTCCTCCCAGCCCACCAAGGCGAAAATCCCCAGCCAGGCCTCCTCCCTCGCCCACCTCTCCCTCTCCGCCTCCGCCAATGTCGCCACCCCCTCCAAGCTCTCCTTCAAGTCCACCATCTCCGCCAACCCCCTCCAAAACCCCCTCACTCTCGGCCCCCGCCGCCCCCTCGACCCCAACAACGGGGCCGGAATTCGTCGAGCTTCCATCGTTTGGTTCCGCAACGACCTCCGCGTCCACGACAACGAGTGCCTCAACTCCGCCAACAACGAGTCCATGTCCGTCTTGCCCGTCTACTGCTTCGACCCGCGAGACTACGGCAAGTCGTCTTCCGGCTTTGACAAGACCGGCCCATTCCGGGCCCAGTTCCTCGTCGAGTCCGTCTCCGACCTGAGGAAGAATCTCCAGGCCAGAGGCTCTGATCTCGTCGTCAGAATCGGGAAGCCCGAGACGGTCCTCGCCGAGCTGGCCAAGACTATTGGGGCCGATGCAATCTATGCCCACAGGGAGGTTTCTCATGATGAGGTCAAGTCTGAGGAGAGGATTGAGTCTGCGATGAAGGATGAGAATGTTGAGGTTAAGTACTTCTGGGGAAGCACTTTGTACCATATGGAGGACTTGCCGTTTAAGCTGGAGGACATGCCCACGAACTATGGTGGGTTCAGAGAGAAGGTGAAGGGGTTGGAGGTGAGGAAGACCATTGAGGCTTTGGAGCAGCTCAAGGGGATGCCGTCTCGCGGCGATGTGGAGCCTGGGGATGTTCCTTCCTTGATGGATTTGGGTCTCAACCCATCTGCTTCCATGGCTCAGGATGGGAAGCCAGGTGCTACTTCTATGGTGGGAGGAGAAGCTGAAGCCCTAGAGAGGCTTAAGAAGTTTGCAGCTGAGTGCCAAGCACAACCTCCCAAGGGGAGCAAAGAAGGAAGTCAGAATAGCATTTATGGTGCAAACTTTTCATGCAAAATCTCACCATGGCTGGCCATGGGATGCCTCTCTCCCCGCAGCATGTTTGATGAGCTAAAGAAAACTGCTAGCAGATCTGTTTCTGCATCCTCAAACCCGGATGATGGTGGCAGCGGAACAAACTGGTTAATGTTTGAGTTACTGTGGAGGGATTTCTTCAGATTTGTTACCAAGAAATACAGTGCTGGAAAGAAACAGCTTGATGCTGCTCCAGCAACAGCATGCACGGGTGCACTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

50.41

Weight (kDa)

6.37

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 132 - 290 4.3e-44 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014144)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 402
AccI GTMKAC 1 cut(s) 483
AccII CGCG 3 cut(s) 423, 499, 927
AcoI YGGCCR 3 cut(s) 180, 657, 1167
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 2 cut(s) 1062, 1294
AfaI GTAC 2 cut(s) 773, 794
AflII CTTAAG 1 cut(s) 1058
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 5 cut(s) 135, 225, 594, 940, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 9 cut(s) 289, 392, 655, 820, 907, 1040, 1073, 1207, 1351
AluI AGCT 9 cut(s) 289, 392, 655, 820, 907, 1040, 1073, 1207, 1351
Alw21I GWGCWC 1 cut(s) 1387
Alw26I GTCTC 5 cut(s) 495, 577, 632, 927, 977
Alw44I GTGCAC 1 cut(s) 1383
Ama87I CYCGRG 1 cut(s) 635
ApaI GGGCCC 1 cut(s) 553
ApaLI GTGCAC 1 cut(s) 1383
ApeKI GCWGC 5 cut(s) 904, 1070, 1191, 1263, 1358
ApoI RAATTY 1 cut(s) 381
AspS9I GGNCC 9 cut(s) 4, 76, 344, 375, 539, 549, 550, 643, 672
AsuC2I CCSGG 2 cut(s) 548, 1250
AsuHPI GGTGA 3 cut(s) 874, 889, 1149
AsuNHI GCTAGC 1 cut(s) 1220
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 2 cut(s) 4, 643
AxyI CCTNAGG 1 cut(s) 581
BaeGI GKGCMC 2 cut(s) 553, 1387
BalI TGGCCA 3 cut(s) 182, 659, 1169
BanII GRGCYC 1 cut(s) 553
BbsI GAAGAC 2 cut(s) 510, 890
Bbv12I GWGCWC 1 cut(s) 1387
BbvI GCAGC 5 cut(s) 916, 1082, 1203, 1275, 1345
BccI CCATC 6 cut(s) 314, 404, 955, 988, 995, 1250
BceAI ACGGC 3 cut(s) 523, 796, 904
BciT130I CCWGG 5 cut(s) 137, 227, 596, 942, 1011
BcnI CCSGG 2 cut(s) 548, 1250
BcoDI GTCTC 5 cut(s) 495, 577, 632, 927, 977
BfaI CTAG 2 cut(s) 1049, 1221
BfrI CTTAAG 1 cut(s) 1058
BglI GCCNNNNNGGC 1 cut(s) 656
BglII AGATCT 1 cut(s) 1226
BisI GCNGC 7 cut(s) 352, 905, 928, 1071, 1192, 1264, 1359
BlsI GCNGC 7 cut(s) 353, 906, 929, 1072, 1193, 1265, 1360
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 7 cut(s) 137, 227, 548, 596, 942, 1011, 1250
Bme18I GGWCC 2 cut(s) 4, 643
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 9 cut(s) 4, 76, 344, 375, 539, 549, 550, 643, 672
BmiI GGNNCC 7 cut(s) 6, 346, 376, 407, 551, 673, 939
BmrFI CCNGG 7 cut(s) 137, 227, 548, 596, 942, 1011, 1250
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 5 cut(s) 667, 906, 1166, 1247, 1345
BmtI GCTAGC 1 cut(s) 1224
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 2 cut(s) 510, 890
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 3 cut(s) 578, 842, 1347
Bpu10I CCTNAGC 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 2 cut(s) 548, 1250
BsaI GGTCTC 1 cut(s) 977
BsaJI CCNNGG 7 cut(s) 135, 207, 941, 990, 1095, 1160, 1170
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 3 cut(s) 78, 553, 1280
Bse21I CCTNAGG 1 cut(s) 581
BseBI CCWGG 5 cut(s) 137, 227, 596, 942, 1011
BseDI CCNNGG 7 cut(s) 135, 207, 941, 990, 1095, 1160, 1170
BseGI GGATG 7 cut(s) 757, 921, 952, 1006, 1181, 1238, 1258
BseMII CTCAG 5 cut(s) 36, 572, 714, 1010, 1065
BseNI ACTGG 3 cut(s) 78, 553, 1280
BseRI GAGGAG 6 cut(s) 59, 74, 184, 223, 740, 1047
BseSI GKGCMC 2 cut(s) 553, 1387
BseXI GCAGC 5 cut(s) 916, 1082, 1203, 1275, 1345
BseYI CCCAGC 2 cut(s) 198, 221
Bsh1236I CGCG 3 cut(s) 423, 499, 927
BsiHKAI GWGCWC 1 cut(s) 1387
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 5 cut(s) 378, 522, 537, 547, 1250
BsmAI GTCTC 5 cut(s) 495, 577, 632, 927, 977
BsmBI CGTCTC 3 cut(s) 577, 632, 927
Bso31I GGTCTC 1 cut(s) 977
BsoBI CYCGRG 1 cut(s) 635
Bsp120I GGGCCC 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 553, 1387
Bsp143I GATC 2 cut(s) 610, 1226
Bsp19I CCATGG 3 cut(s) 990, 1160, 1170
BspCNI CTCAG 5 cut(s) 35, 573, 715, 1009, 1066
BspFNI CGCG 3 cut(s) 423, 499, 927
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 7 cut(s) 6, 346, 376, 407, 551, 673, 939
BspOI GCTAGC 1 cut(s) 1224
BspTI CTTAAG 1 cut(s) 1058
BspTNI GGTCTC 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 3 cut(s) 78, 553, 1280
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 7 cut(s) 135, 207, 941, 990, 1095, 1160, 1170
BssMI GATC 2 cut(s) 610, 1226
BssT1I CCWWGG 5 cut(s) 207, 990, 1095, 1160, 1170
Bst2UI CCWGG 5 cut(s) 137, 227, 596, 942, 1011
Bst4CI ACNGT 3 cut(s) 643, 1296, 1334
Bst6I CTCTTC 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 1058
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 4 cut(s) 657, 1167, 1222, 1375
BstDEI CTNAG 5 cut(s) 22, 581, 723, 996, 1074
BstDSI CCRYGG 3 cut(s) 990, 1160, 1170
BstF5I GGATG 7 cut(s) 757, 921, 952, 1006, 1181, 1238, 1258
BstFNI CGCG 3 cut(s) 423, 499, 927
BstKTI GATC 2 cut(s) 613, 1229
BstMAI GTCTC 5 cut(s) 495, 577, 632, 927, 977
BstMBI GATC 2 cut(s) 610, 1226
BstMWI GCNNNNNNNGC 7 cut(s) 272, 351, 656, 686, 817, 992, 1364
BstNI CCWGG 5 cut(s) 137, 227, 596, 942, 1011
BstNSI RCATGY 3 cut(s) 832, 1198, 1377
BstSCI CCNGG 7 cut(s) 135, 225, 546, 594, 940, 1009, 1248
BstSLI GKGCMC 2 cut(s) 553, 1387
BstUI CGCG 3 cut(s) 423, 499, 927
BstV1I GCAGC 5 cut(s) 916, 1082, 1203, 1275, 1345
BstV2I GAAGAC 2 cut(s) 510, 890
BstX2I RGATCY 1 cut(s) 1226
BstYI RGATCY 1 cut(s) 1226
Bsu36I CCTNAGG 1 cut(s) 581
BtgI CCRYGG 3 cut(s) 990, 1160, 1170
BtgZI GCGATG 2 cut(s) 758, 945
BtsCI GGATG 7 cut(s) 757, 921, 952, 1006, 1181, 1238, 1258
BtsIMutI CAGTG 2 cut(s) 71, 1339
Cac8I GCNNGC 4 cut(s) 657, 1167, 1222, 1375
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 9 cut(s) 4, 76, 344, 375, 539, 549, 550, 643, 672
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 772, 793
CviAII CATG 9 cut(s) 466, 707, 829, 991, 1146, 1161, 1171, 1195, 1374
CviQI GTAC 2 cut(s) 772, 793
DdeI CTNAG 5 cut(s) 22, 581, 723, 996, 1074
DpnI GATC 2 cut(s) 612, 1228
DpnII GATC 2 cut(s) 610, 1226
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 3 cut(s) 180, 657, 1167
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 4 cut(s) 247, 253, 301, 439
Eco130I CCWWGG 5 cut(s) 207, 990, 1095, 1160, 1170
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 977
Eco47I GGWCC 2 cut(s) 4, 643
Eco57I CTGAAG 2 cut(s) 1062, 1294
Eco81I CCTNAGG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 5 cut(s) 135, 225, 594, 940, 1009
EcoT14I CCWWGG 5 cut(s) 207, 990, 1095, 1160, 1170
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 5 cut(s) 207, 990, 1095, 1160, 1170
Esp3I CGTCTC 3 cut(s) 577, 632, 927
FaeI CATG 9 cut(s) 469, 710, 832, 994, 1149, 1164, 1174, 1198, 1377
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 9 cut(s) 465, 706, 828, 990, 1145, 1160, 1170, 1194, 1373
FauI CCCGC 3 cut(s) 356, 504, 1196
FauNDI CATATG 1 cut(s) 798
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 7 cut(s) 352, 905, 928, 1071, 1192, 1264, 1359
FokI GGATG 7 cut(s) 764, 928, 959, 1013, 1188, 1225, 1265
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 7 cut(s) 352, 905, 928, 1071, 1192, 1264, 1359
FspBI CTAG 2 cut(s) 1049, 1221
GluI GCNGC 7 cut(s) 352, 905, 928, 1071, 1192, 1264, 1359
GsaI CCCAGC 2 cut(s) 202, 225
GsuI CTGGAG 3 cut(s) 578, 842, 1347
HapII CCGG 5 cut(s) 378, 522, 537, 547, 1250
HgaI GACGC 1 cut(s) 412
Hin1II CATG 9 cut(s) 469, 710, 832, 994, 1149, 1164, 1174, 1198, 1377
HinfI GANTC 6 cut(s) 35, 461, 566, 589, 624, 737
HpaII CCGG 5 cut(s) 378, 522, 537, 547, 1250
HphI GGTGA 3 cut(s) 874, 889, 1149
Hpy166II GTNNAC 4 cut(s) 303, 427, 484, 1385
Hpy188I TCNGA 9 cut(s) 25, 43, 577, 610, 623, 724, 854, 1119, 1313
Hpy188III TCNNGA 4 cut(s) 151, 628, 707, 998
Hpy8I GTNNAC 4 cut(s) 303, 427, 484, 1385
Hpy99I CGWCG 3 cut(s) 390, 566, 620
HpyAV CCTTC 8 cut(s) 89, 99, 304, 742, 853, 859, 963, 1103
HpyCH4III ACNGT 3 cut(s) 643, 1296, 1334
HpyCH4V TGCA 7 cut(s) 680, 1070, 1136, 1149, 1238, 1377, 1385
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 351, 656, 686, 817, 992, 1364
HpyF3I CTNAG 5 cut(s) 22, 581, 723, 996, 1074
Hsp92II CATG 9 cut(s) 469, 710, 832, 994, 1149, 1164, 1174, 1198, 1377
Kzo9I GATC 2 cut(s) 610, 1226
LmnI GCTCC 5 cut(s) 46, 901, 937, 1101, 1366
Lsp1109I GCAGC 5 cut(s) 916, 1082, 1203, 1275, 1345
LweI GCATC 5 cut(s) 667, 906, 1166, 1247, 1345
MaeI CTAG 2 cut(s) 1049, 1221
MaeIII GTNAC 2 cut(s) 1290, 1318
MalI GATC 2 cut(s) 612, 1228
MboI GATC 2 cut(s) 610, 1226
MboII GAAGA 9 cut(s) 84, 87, 90, 93, 181, 510, 598, 895, 1300
MflI RGATCY 1 cut(s) 1226
MhlI GDGCHC 2 cut(s) 553, 1387
MlsI TGGCCA 3 cut(s) 182, 659, 1169
MluCI AATT 2 cut(s) 10, 381
MluNI TGGCCA 3 cut(s) 182, 659, 1169
MlyI GAGTC 3 cut(s) 470, 575, 746
MmeI TCCRAC 3 cut(s) 190, 600, 852
Mox20I TGGCCA 3 cut(s) 182, 659, 1169
MscI TGGCCA 3 cut(s) 182, 659, 1169
MseI TTAA 4 cut(s) 768, 816, 1059, 1280
Msp20I TGGCCA 3 cut(s) 182, 659, 1169
MspA1I CMGCKG 2 cut(s) 1073, 1266
MspCI CTTAAG 1 cut(s) 1058
MspI CCGG 5 cut(s) 378, 522, 537, 547, 1250
MspR9I CCNGG 7 cut(s) 137, 227, 548, 596, 942, 1011, 1250
MvaI CCWGG 5 cut(s) 137, 227, 596, 942, 1011
MvnI CGCG 3 cut(s) 423, 499, 927
MwoI GCNNNNNNNGC 7 cut(s) 272, 351, 656, 686, 817, 992, 1364
NciI CCSGG 2 cut(s) 548, 1250
NcoI CCATGG 3 cut(s) 990, 1160, 1170
NdeI CATATG 1 cut(s) 798
NdeII GATC 2 cut(s) 610, 1226
NheI GCTAGC 1 cut(s) 1220
NlaIII CATG 9 cut(s) 469, 710, 832, 994, 1149, 1164, 1174, 1198, 1377
NlaIV GGNNCC 7 cut(s) 6, 346, 376, 407, 551, 673, 939
NmeAIII GCCGAG 2 cut(s) 321, 676
NspI RCATGY 3 cut(s) 832, 1198, 1377
PaeI GCATGC 1 cut(s) 1377
PagI TCATGA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 230
PcsI WCGNNNNNNNCGW 3 cut(s) 420, 567, 633
PfeI GAWTC 3 cut(s) 35, 589, 624
PflMI CCANNNNNTGG 1 cut(s) 402
PkrI GCNGC 7 cut(s) 353, 906, 929, 1072, 1193, 1265, 1360
PleI GAGTC 3 cut(s) 469, 574, 745
PpsI GAGTC 3 cut(s) 469, 574, 745
Psp6I CCWGG 5 cut(s) 135, 225, 594, 940, 1009
PspFI CCCAGC 2 cut(s) 198, 221
PspGI CCWGG 5 cut(s) 135, 225, 594, 940, 1009
PspN4I GGNNCC 7 cut(s) 6, 346, 376, 407, 551, 673, 939
PspOMI GGGCCC 1 cut(s) 549
PspPI GGNCC 9 cut(s) 4, 76, 344, 375, 539, 549, 550, 643, 672
PsuI RGATCY 1 cut(s) 1226
PvuII CAGCTG 1 cut(s) 1073
RsaI GTAC 2 cut(s) 773, 794
RsaNI GTAC 2 cut(s) 772, 793
SaqAI TTAA 4 cut(s) 768, 816, 1059, 1280
SatI GCNGC 7 cut(s) 352, 905, 928, 1071, 1192, 1264, 1359
Sau3AI GATC 2 cut(s) 610, 1226
Sau96I GGNCC 9 cut(s) 4, 76, 344, 375, 539, 549, 550, 643, 672
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 3 cut(s) 470, 575, 746
ScrFI CCNGG 7 cut(s) 137, 227, 548, 596, 942, 1011, 1250
SduI GDGCHC 2 cut(s) 553, 1387
SfaNI GCATC 5 cut(s) 667, 906, 1166, 1247, 1345
SinI GGWCC 2 cut(s) 4, 643
SmlI CTYRAG 2 cut(s) 908, 1058
SmoI CTYRAG 2 cut(s) 908, 1058
SphI GCATGC 1 cut(s) 1377
Sse9I AATT 2 cut(s) 10, 381
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 2 cut(s) 1049, 1221
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 7 cut(s) 135, 225, 546, 594, 940, 1009, 1248
StyI CCWWGG 5 cut(s) 207, 990, 1095, 1160, 1170
TaaI ACNGT 3 cut(s) 643, 1296, 1334
TaqI TCGA 4 cut(s) 360, 388, 492, 564
TasI AATT 2 cut(s) 10, 381
TatI WGTACW 1 cut(s) 771
TauI GCSGC 2 cut(s) 354, 930
TfiI GAWTC 3 cut(s) 35, 589, 624
Tru1I TTAA 4 cut(s) 768, 816, 1059, 1280
Tru9I TTAA 4 cut(s) 768, 816, 1059, 1280
TscAI CASTG 2 cut(s) 78, 1339
TseI GCWGC 5 cut(s) 904, 1070, 1191, 1263, 1358
TspDTI ATGAA 2 cut(s) 761, 1134
TspGWI ACGGA 2 cut(s) 460, 559
TspRI CASTG 2 cut(s) 78, 1339
Van91I CCANNNNNTGG 1 cut(s) 402
Vha464I CTTAAG 1 cut(s) 1058
VneI GTGCAC 1 cut(s) 1383
VpaK11BI GGWCC 2 cut(s) 4, 643
XapI RAATTY 1 cut(s) 381
XceI RCATGY 3 cut(s) 832, 1198, 1377
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 1049, 1221
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.