Rh6DG354600

Blue-light photoreceptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014144
Physical Location & Seq
Reverse (-)
55350411 .. 55353437
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG354600.1

Sequence Viewer

Length: 1308 bp
ATGGACCCCAATTCCCAAATCGCAGAGAACCCAGAATCATCAGAGGAGCAACAAAACCCACTAGCCCTTCTCCTCCCTTCTTCTTCTTCTCCTTCTCCATTCGCCACCGCTTCACTCTCACTCTCCCTGGCCTCAATCCTCCCCACCCACTTTTTCCAACAACCCAAAGTGGCCACCCTCTTCTCCTCTCAGCCCACCAAGGCCAAAATCCCCACCCAGGCCTCCTCCCTCGCCCACCTCTCCCTCTCCGCCTCCGCCAATGTCGCCACCCCCTCCAAGCTCTCCTTCAAGTCCACCATCTCCGCCAACCCGCTCCAAAACCCCCTCACTCTCGGCCCCCGCCGCCCCCTCGACCCCAACAACGGGGCCGGAATTCGTCGAGCTTCCATCGTTTGGTTCCGCAACGACCTCCGCGTCCACGACAACGAGTGCCTCAACTCCGCCAACAACGAGTCCATGTCCGTCTTGCCCGTCTACTGCTTCGACCCGCGAGAATACGGCAAGTCGTCTTCCGGCTTCGACAAGACCGGCCCATTCCGGGCCCAGTTCCTCGTCGAGTCCGTCTCCGACCTGAGGAAGAATCTCCAGGCCAGAGGCTCTGATCTGGTCGTCAGAATCGGCAAGCCCGAGACGGTCCTCGTCGAGCTGGCCAAGACTATTGGGGCCGATGCAATCTATGCCCACAGGGAGGTTTCTCATGATGAGCTCAAGTCTGAGGAGAGGATCGAGTCTGCGATGAAGGACGAGAATGTTGAGGTTAAGTACTTCTGGGGAAGCACTTTGTACCATATGGAGGACTTGCCCTTTAAGCTGGAGGACATGCCCACGAACTATGGTGGGTTCAGAGAGAAGGTGAAGGGGTTGGAGGTGAGGAAGACCATTGAGGCTTTGGAGCAGATGAAGGGGATGCCGTCTCGCGGCGATGTGGAGCCTGGGGATGTTCCTTCCTTGATGGATTTGGGTCTCAACCCGTCTGCTTCCATGGCTCAGGATGGGAAGCCAGGTGCTGCTTCTATGGTGGGAGGAGAAGCTGAAGCCCTGGAGAGGCTTAAGAAGTTTGCAGCTGAGTGCCAGGCACAACCTCCCAAGGGGAGCAAAGAAGGAAGTCAGAATAGCATTTATGGTGCAAACTTTTCATGCAAAATCTCACCATGGCTGGCCATGGGATGCCTCTCTCCCCGCAGTATGTTTGATGAGCTAAAGAAAACTGCTAGCAGATCTGTTTCTGCATCCTCAAACCCGGATGATGGTGGCAGCGGAACAAACTGGTTAATGTTTGAGTTACTGTGGAGGGATTTCTTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase

Protein Analysis

435

Amino Acids

47.44

Weight (kDa)

5.83

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 129 - 287 2.4e-44 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47590
fragaria_vesca FvH4_2g25790
malus_domestica MD03G1288700.v1.1 MD11G1309400.v1.1
prunus_persica Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1
pyrus_communis pycom03g22880 pycom11g27050
rosa_chinensis RchiOBHm_Chr6g0294101
rosa_laevigata RLG00000011899
rosa_multiflora Rmu_sc0005037.1_g000012
rosa_roxburghii Rroxscaffold_7G00173650
rosa_rugosa Rorug06G0241100
rosa_samantha Rh6BG360700 Rh6DG354600
rosa_wichuraiana Rw6G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 474
AccII CGCG 3 cut(s) 414, 490, 918
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 3 cut(s) 171, 648, 1158
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 1053, 1285
AfaI GTAC 2 cut(s) 764, 785
AflII CTTAAG 1 cut(s) 1049
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 7 cut(s) 126, 216, 585, 931, 1000, 1038, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 8 cut(s) 280, 383, 646, 706, 811, 1031, 1064, 1198
AluI AGCT 8 cut(s) 280, 383, 646, 706, 811, 1031, 1064, 1198
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 4 cut(s) 568, 623, 918, 968
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 1007
Ama87I CYCGRG 1 cut(s) 626
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 1007, 1061, 1254
ApoI RAATTY 1 cut(s) 372
AspS9I GGNCC 8 cut(s) 4, 335, 366, 530, 540, 541, 634, 663
AsuC2I CCSGG 2 cut(s) 539, 1241
AsuHPI GGTGA 3 cut(s) 865, 880, 1140
AsuNHI GCTAGC 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 2 cut(s) 4, 634
AxyI CCTNAGG 1 cut(s) 572
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 3 cut(s) 173, 650, 1160
BanII GRGCYC 2 cut(s) 544, 708
BbsI GAAGAC 2 cut(s) 501, 881
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 994, 1073, 1266
BccI CCATC 5 cut(s) 305, 395, 946, 986, 1241
BceAI ACGGC 2 cut(s) 514, 895
BciT130I CCWGG 7 cut(s) 128, 218, 587, 933, 1002, 1040, 1073
BcnI CCSGG 2 cut(s) 539, 1241
BcoDI GTCTC 4 cut(s) 568, 623, 918, 968
BfaI CTAG 2 cut(s) 62, 1212
BfrI CTTAAG 1 cut(s) 1049
BglII AGATCT 1 cut(s) 1217
BisI GCNGC 5 cut(s) 343, 919, 1008, 1062, 1255
BlsI GCNGC 5 cut(s) 344, 920, 1009, 1063, 1256
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 9 cut(s) 128, 218, 539, 587, 933, 1002, 1040, 1073, 1241
Bme18I GGWCC 2 cut(s) 4, 634
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 8 cut(s) 4, 335, 366, 530, 540, 541, 634, 663
BmiI GGNNCC 7 cut(s) 6, 337, 367, 398, 542, 664, 930
BmrFI CCNGG 9 cut(s) 128, 218, 539, 587, 933, 1002, 1040, 1073, 1241
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 4 cut(s) 658, 897, 1157, 1238
BmtI GCTAGC 1 cut(s) 1215
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 2 cut(s) 501, 881
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 3 cut(s) 569, 833, 1061
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 2 cut(s) 539, 1241
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 9 cut(s) 126, 198, 216, 932, 981, 1038, 1086, 1151, 1161
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 2 cut(s) 544, 1271
Bse21I CCTNAGG 1 cut(s) 572
BseBI CCWGG 7 cut(s) 128, 218, 587, 933, 1002, 1040, 1073
BseDI CCNNGG 9 cut(s) 126, 198, 216, 932, 981, 1038, 1086, 1151, 1161
BseGI GGATG 6 cut(s) 912, 943, 997, 1172, 1229, 1249
BseMII CTCAG 5 cut(s) 203, 563, 705, 1001, 1056
BseNI ACTGG 2 cut(s) 544, 1271
BseRI GAGGAG 6 cut(s) 59, 62, 175, 214, 731, 1038
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 3 cut(s) 994, 1073, 1266
Bsh1236I CGCG 3 cut(s) 414, 490, 918
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 5 cut(s) 369, 513, 528, 538, 1241
BsmAI GTCTC 4 cut(s) 568, 623, 918, 968
BsmBI CGTCTC 3 cut(s) 568, 623, 918
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 626
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 544, 708
Bsp143I GATC 3 cut(s) 601, 723, 1217
Bsp19I CCATGG 3 cut(s) 981, 1151, 1161
BspCNI CTCAG 5 cut(s) 202, 564, 706, 1000, 1057
BspFNI CGCG 3 cut(s) 414, 490, 918
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 7 cut(s) 6, 337, 367, 398, 542, 664, 930
BspOI GCTAGC 1 cut(s) 1215
BspPI GGATC 1 cut(s) 731
BspTI CTTAAG 1 cut(s) 1049
BspTNI GGTCTC 1 cut(s) 968
BsrBI CCGCTC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 2 cut(s) 544, 1271
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 9 cut(s) 126, 198, 216, 932, 981, 1038, 1086, 1151, 1161
BssMI GATC 3 cut(s) 601, 723, 1217
BssT1I CCWWGG 5 cut(s) 198, 981, 1086, 1151, 1161
Bst2UI CCWGG 7 cut(s) 128, 218, 587, 933, 1002, 1040, 1073
Bst4CI ACNGT 2 cut(s) 634, 1287
Bst6I CTCTTC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 1049
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 4 cut(s) 623, 648, 1158, 1213
BstDEI CTNAG 5 cut(s) 189, 572, 714, 987, 1065
BstDSI CCRYGG 3 cut(s) 981, 1151, 1161
BstF5I GGATG 6 cut(s) 912, 943, 997, 1172, 1229, 1249
BstFNI CGCG 3 cut(s) 414, 490, 918
BstKTI GATC 3 cut(s) 604, 726, 1220
BstMAI GTCTC 4 cut(s) 568, 623, 918, 968
BstMBI GATC 3 cut(s) 601, 723, 1217
BstMWI GCNNNNNNNGC 5 cut(s) 263, 342, 677, 808, 983
BstNI CCWGG 7 cut(s) 128, 218, 587, 933, 1002, 1040, 1073
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 9 cut(s) 126, 216, 537, 585, 931, 1000, 1038, 1071, 1239
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 3 cut(s) 414, 490, 918
BstV1I GCAGC 3 cut(s) 994, 1073, 1266
BstV2I GAAGAC 2 cut(s) 501, 881
BstX2I RGATCY 1 cut(s) 1217
BstYI RGATCY 1 cut(s) 1217
Bsu36I CCTNAGG 1 cut(s) 572
BtgI CCRYGG 3 cut(s) 981, 1151, 1161
BtgZI GCGATG 2 cut(s) 749, 936
BtsCI GGATG 6 cut(s) 912, 943, 997, 1172, 1229, 1249
Cac8I GCNNGC 4 cut(s) 623, 648, 1158, 1213
CaiI CAGNNNCTG 1 cut(s) 1007
CciI TCATGA 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 8 cut(s) 4, 335, 366, 530, 540, 541, 634, 663
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 763, 784
CviAII CATG 7 cut(s) 457, 698, 820, 982, 1137, 1152, 1162
CviQI GTAC 2 cut(s) 763, 784
DdeI CTNAG 5 cut(s) 189, 572, 714, 987, 1065
DpnI GATC 3 cut(s) 603, 725, 1219
DpnII GATC 3 cut(s) 601, 723, 1217
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 3 cut(s) 171, 648, 1158
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 4 cut(s) 238, 244, 292, 430
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 5 cut(s) 198, 981, 1086, 1151, 1161
Eco147I AGGCCT 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 544, 708
Eco31I GGTCTC 1 cut(s) 968
Eco47I GGWCC 2 cut(s) 4, 634
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 2 cut(s) 1053, 1285
Eco81I CCTNAGG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 706
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 7 cut(s) 126, 216, 585, 931, 1000, 1038, 1071
EcoT14I CCWWGG 5 cut(s) 198, 981, 1086, 1151, 1161
EcoT38I GRGCYC 2 cut(s) 544, 708
ErhI CCWWGG 5 cut(s) 198, 981, 1086, 1151, 1161
Esp3I CGTCTC 3 cut(s) 568, 623, 918
FaeI CATG 7 cut(s) 460, 701, 823, 985, 1140, 1155, 1165
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 7 cut(s) 456, 697, 819, 981, 1136, 1151, 1161
FauI CCCGC 4 cut(s) 318, 347, 495, 1187
FauNDI CATATG 1 cut(s) 789
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 343, 919, 1008, 1062, 1255
FokI GGATG 6 cut(s) 919, 950, 1004, 1179, 1216, 1256
FriOI GRGCYC 2 cut(s) 544, 708
Fsp4HI GCNGC 5 cut(s) 343, 919, 1008, 1062, 1255
FspBI CTAG 2 cut(s) 62, 1212
GluI GCNGC 5 cut(s) 343, 919, 1008, 1062, 1255
GsuI CTGGAG 3 cut(s) 569, 833, 1061
HapII CCGG 5 cut(s) 369, 513, 528, 538, 1241
HgaI GACGC 1 cut(s) 403
Hin1II CATG 7 cut(s) 460, 701, 823, 985, 1140, 1155, 1165
HinfI GANTC 6 cut(s) 35, 452, 557, 580, 615, 728
HpaII CCGG 5 cut(s) 369, 513, 528, 538, 1241
HphI GGTGA 3 cut(s) 865, 880, 1140
Hpy166II GTNNAC 3 cut(s) 294, 418, 475
Hpy188I TCNGA 7 cut(s) 43, 568, 601, 614, 715, 845, 1110
Hpy188III TCNNGA 2 cut(s) 698, 989
Hpy8I GTNNAC 3 cut(s) 294, 418, 475
Hpy99I CGWCG 3 cut(s) 381, 557, 644
HpyCH4III ACNGT 2 cut(s) 634, 1287
HpyCH4V TGCA 5 cut(s) 671, 1061, 1127, 1140, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 342, 677, 808, 983
HpyF3I CTNAG 5 cut(s) 189, 572, 714, 987, 1065
Hsp92II CATG 7 cut(s) 460, 701, 823, 985, 1140, 1155, 1165
Kzo9I GATC 3 cut(s) 601, 723, 1217
LmnI GCTCC 5 cut(s) 46, 318, 892, 928, 1092
Lsp1109I GCAGC 3 cut(s) 994, 1073, 1266
LweI GCATC 4 cut(s) 658, 897, 1157, 1238
MaeI CTAG 2 cut(s) 62, 1212
MaeIII GTNAC 1 cut(s) 1281
MalI GATC 3 cut(s) 603, 725, 1219
MbiI CCGCTC 1 cut(s) 313
MboI GATC 3 cut(s) 601, 723, 1217
MboII GAAGA 8 cut(s) 72, 75, 78, 172, 501, 589, 886, 1291
MflI RGATCY 1 cut(s) 1217
MhlI GDGCHC 2 cut(s) 544, 708
MlsI TGGCCA 3 cut(s) 173, 650, 1160
MluCI AATT 2 cut(s) 10, 372
MluNI TGGCCA 3 cut(s) 173, 650, 1160
MlyI GAGTC 3 cut(s) 461, 566, 737
MmeI TCCRAC 3 cut(s) 181, 591, 843
Mox20I TGGCCA 3 cut(s) 173, 650, 1160
MscI TGGCCA 3 cut(s) 173, 650, 1160
MseI TTAA 4 cut(s) 759, 807, 1050, 1271
Msp20I TGGCCA 3 cut(s) 173, 650, 1160
MspA1I CMGCKG 2 cut(s) 1064, 1257
MspCI CTTAAG 1 cut(s) 1049
MspI CCGG 5 cut(s) 369, 513, 528, 538, 1241
MspR9I CCNGG 9 cut(s) 128, 218, 539, 587, 933, 1002, 1040, 1073, 1241
MvaI CCWGG 7 cut(s) 128, 218, 587, 933, 1002, 1040, 1073
MvnI CGCG 3 cut(s) 414, 490, 918
MwoI GCNNNNNNNGC 5 cut(s) 263, 342, 677, 808, 983
NciI CCSGG 2 cut(s) 539, 1241
NcoI CCATGG 3 cut(s) 981, 1151, 1161
NdeI CATATG 1 cut(s) 789
NdeII GATC 3 cut(s) 601, 723, 1217
NheI GCTAGC 1 cut(s) 1211
NlaIII CATG 7 cut(s) 460, 701, 823, 985, 1140, 1155, 1165
NlaIV GGNNCC 7 cut(s) 6, 337, 367, 398, 542, 664, 930
NmeAIII GCCGAG 1 cut(s) 312
NspI RCATGY 1 cut(s) 823
PagI TCATGA 1 cut(s) 697
PceI AGGCCT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 3 cut(s) 411, 558, 624
PfeI GAWTC 3 cut(s) 35, 580, 615
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 5 cut(s) 344, 920, 1009, 1063, 1256
PleI GAGTC 3 cut(s) 460, 565, 736
PpsI GAGTC 3 cut(s) 460, 565, 736
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 7 cut(s) 126, 216, 585, 931, 1000, 1038, 1071
PspGI CCWGG 7 cut(s) 126, 216, 585, 931, 1000, 1038, 1071
PspN4I GGNNCC 7 cut(s) 6, 337, 367, 398, 542, 664, 930
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 8 cut(s) 4, 335, 366, 530, 540, 541, 634, 663
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 1217
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 2 cut(s) 764, 785
RsaNI GTAC 2 cut(s) 763, 784
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 4 cut(s) 759, 807, 1050, 1271
SatI GCNGC 5 cut(s) 343, 919, 1008, 1062, 1255
Sau3AI GATC 3 cut(s) 601, 723, 1217
Sau96I GGNCC 8 cut(s) 4, 335, 366, 530, 540, 541, 634, 663
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 3 cut(s) 461, 566, 737
ScrFI CCNGG 9 cut(s) 128, 218, 539, 587, 933, 1002, 1040, 1073, 1241
SduI GDGCHC 2 cut(s) 544, 708
SfaNI GCATC 4 cut(s) 658, 897, 1157, 1238
SinI GGWCC 2 cut(s) 4, 634
SmlI CTYRAG 2 cut(s) 707, 1049
SmoI CTYRAG 2 cut(s) 707, 1049
Sse9I AATT 2 cut(s) 10, 372
SseBI AGGCCT 1 cut(s) 221
SspMI CTAG 2 cut(s) 62, 1212
SstI GAGCTC 1 cut(s) 708
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 9 cut(s) 126, 216, 537, 585, 931, 1000, 1038, 1071, 1239
StyI CCWWGG 5 cut(s) 198, 981, 1086, 1151, 1161
TaaI ACNGT 2 cut(s) 634, 1287
TaqI TCGA 7 cut(s) 351, 379, 483, 519, 555, 642, 726
TasI AATT 2 cut(s) 10, 372
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 345, 921
TfiI GAWTC 3 cut(s) 35, 580, 615
Tru1I TTAA 4 cut(s) 759, 807, 1050, 1271
Tru9I TTAA 4 cut(s) 759, 807, 1050, 1271
TseI GCWGC 3 cut(s) 1007, 1061, 1254
TspDTI ATGAA 3 cut(s) 752, 914, 1125
TspGWI ACGGA 2 cut(s) 451, 550
Van91I CCANNNNNTGG 1 cut(s) 393
Vha464I CTTAAG 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 4, 634
XapI RAATTY 1 cut(s) 372
XceI RCATGY 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 2 cut(s) 62, 1212
ZrmI AGTACT 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.