Rorug06G0241100

Blue-light photoreceptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014144
Physical Location & Seq
Reverse (-)
38445524 .. 38446584
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0241100.1

Sequence Viewer

Length: 825 bp
ATGGCTTACCACACTCGATCTAACAGCTTCCCCTCTAGGCCACACCCAGTCAATCAAGAAGTTGATGAATATTTGTCCAGATTGAGGTCTTCTGAAACAACTTCCACATCATCTATAAGCCACAGACTAAGTGGTCTTCAAGACTTACATGATTGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAATCCTTGGCAAAAGAGAAACATCAGAAATGGGCTGATGAGATATTAGATGGCTCTCTCAGGATGTTGGATGTTTGTAGTACTGCCAAGGATGCCATGTTGCAAACCAAGGAGTGCATACAAGAACTTCAATCAATCATTCGAAGAAGGCGTAAAGACCAATCTGGAGTGGTCACAAGTGAGGTTAGAAAATACTTAACCTTGAGGAAGACAGTGAAAAAGGCAATCCAAAAGGCTTTGGGGAATCTGAAGGCAAACAGATCCACTTTCTCTTCGCTCAACAACGACCAAGAGACTATCTCCATTTTTAGCAAGCTGAGAGATGTTGAAGTAGTCACTCTCACAGTGTTGGAATCAGTGTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCAAAAAGAATAGCTTGCAAGGAAGAAATGAAAGTAAACGAATTTGCACTAGTGGATGCTGCATTGAAGTCACACAAGAGTTTAGACGATGCACACAACCAACTTAACAATCTGAACTCATGCATTCAAGACCAAGAAGAAGGACTCGACTGCCTATTTAGGCAATTGATCAAAACAAGAGTCTCCCTTCTCAACATCTTAAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase

Protein Analysis

274

Amino Acids

31.05

Weight (kDa)

9.19

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 43 - 271 6.2e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014144)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47590
fragaria_vesca FvH4_2g25790
malus_domestica MD03G1288700.v1.1 MD11G1309400.v1.1
prunus_persica Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1 Prupe.8G262000_v2.0.a1
pyrus_communis pycom03g22880 pycom11g27050
rosa_chinensis RchiOBHm_Chr6g0294101
rosa_laevigata RLG00000011899
rosa_multiflora Rmu_sc0005037.1_g000012
rosa_roxburghii Rroxscaffold_7G00173650
rosa_rugosa Rorug06G0241100
rosa_samantha Rh6BG360700 Rh6DG354600
rosa_wichuraiana Rw6G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 84
AflII CTTAAG 1 cut(s) 814
AgsI TTSAA 6 cut(s) 140, 173, 320, 518, 682, 743
AhlI ACTAGT 1 cut(s) 664
AluBI AGCT 4 cut(s) 27, 505, 588, 629
AluI AGCT 4 cut(s) 27, 505, 588, 629
Alw26I GTCTC 2 cut(s) 476, 802
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 38, 566
ApeKI GCWGC 2 cut(s) 585, 674
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 331
BbsI GAAGAC 3 cut(s) 81, 128, 404
BbvI GCAGC 2 cut(s) 597, 661
BccI CCATC 2 cut(s) 233, 601
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 476, 802
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 4 cut(s) 36, 582, 665, 823
BfrI CTTAAG 1 cut(s) 814
BisI GCNGC 2 cut(s) 586, 675
BlsI GCNGC 2 cut(s) 587, 676
BmcAI AGTACT 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 271, 661, 694
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 3 cut(s) 81, 128, 404
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 195, 276, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 195, 276, 297
BseGI GGATG 4 cut(s) 258, 265, 286, 676
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 262, 497
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 597, 661
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 2 cut(s) 40, 568
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 476, 802
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 2 cut(s) 40, 568
Bsp119I TTCGAA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 17, 449, 783
BspANI GGCC 2 cut(s) 40, 568
BspCNI CTCAG 2 cut(s) 261, 498
BspPI GGATC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 814
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 195, 276, 297
BssMI GATC 3 cut(s) 17, 449, 783
BssT1I CCWWGG 3 cut(s) 195, 276, 297
Bst4CI ACNGT 2 cut(s) 403, 535
Bst6I CTCTTC 1 cut(s) 466
BstAFI CTTAAG 1 cut(s) 814
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 503, 631
BstDEI CTNAG 3 cut(s) 128, 248, 506
BstF5I GGATG 4 cut(s) 258, 265, 286, 676
BstKTI GATC 3 cut(s) 20, 452, 786
BstMAI GTCTC 2 cut(s) 476, 802
BstMBI GATC 3 cut(s) 17, 449, 783
BstMWI GCNNNNNNNGC 2 cut(s) 175, 281
BstV1I GCAGC 2 cut(s) 597, 661
BstV2I GAAGAC 3 cut(s) 81, 128, 404
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 40, 568
BtsCI GGATG 4 cut(s) 258, 265, 286, 676
BtsIMutI CAGTG 3 cut(s) 408, 540, 552
Cac8I GCNNGC 2 cut(s) 503, 631
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 149, 286, 735
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 3 cut(s) 128, 248, 506
DpnI GATC 3 cut(s) 19, 451, 785
DpnII GATC 3 cut(s) 17, 449, 783
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Eco130I CCWWGG 3 cut(s) 195, 276, 297
Eco57I CTGAAG 1 cut(s) 458
EcoT14I CCWWGG 3 cut(s) 195, 276, 297
EcoT22I ATGCAT 1 cut(s) 740
ErhI CCWWGG 3 cut(s) 195, 276, 297
FaeI CATG 3 cut(s) 152, 289, 738
FaiI YATR 5 cut(s) 116, 150, 287, 308, 736
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FatI CATG 3 cut(s) 148, 285, 734
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 2 cut(s) 586, 675
FokI GGATG 4 cut(s) 265, 272, 293, 683
Fsp4HI GCNGC 2 cut(s) 586, 675
FspBI CTAG 4 cut(s) 36, 582, 665, 823
GluI GCNGC 2 cut(s) 586, 675
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 2 cut(s) 40, 568
Hin1II CATG 3 cut(s) 152, 289, 738
HinfI GANTC 4 cut(s) 433, 542, 759, 795
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 4 cut(s) 94, 216, 438, 729
Hpy188III TCNNGA 6 cut(s) 56, 78, 140, 250, 354, 743
Hpy8I GTNNAC 1 cut(s) 652
HpyAV CCTTC 5 cut(s) 330, 433, 565, 749, 812
HpyCH4III ACNGT 2 cut(s) 403, 535
HpyCH4V TGCA 8 cut(s) 292, 306, 613, 633, 662, 677, 707, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 281
HpyF3I CTNAG 3 cut(s) 128, 248, 506
Hsp92II CATG 3 cut(s) 152, 289, 738
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 3 cut(s) 17, 449, 783
LpnPI CCDG 6 cut(s) 60, 91, 235, 339, 549, 574
Lsp1109I GCAGC 2 cut(s) 597, 661
LweI GCATC 3 cut(s) 271, 661, 694
MaeI CTAG 4 cut(s) 36, 582, 665, 823
MaeIII GTNAC 3 cut(s) 361, 523, 684
MalI GATC 3 cut(s) 19, 451, 785
MboI GATC 3 cut(s) 17, 449, 783
MboII GAAGA 7 cut(s) 81, 128, 345, 409, 453, 650, 764
MfeI CAATTG 2 cut(s) 173, 779
MflI RGATCY 1 cut(s) 449
MluCI AATT 3 cut(s) 173, 656, 779
MlyI GAGTC 2 cut(s) 753, 804
MmeI TCCRAC 2 cut(s) 237, 519
MnlI CCTC 4 cut(s) 43, 78, 364, 387
Mph1103I ATGCAT 1 cut(s) 740
MseI TTAA 3 cut(s) 386, 720, 815
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 588
MspCI CTTAAG 1 cut(s) 814
MunI CAATTG 2 cut(s) 173, 779
Mva1269I GAATGC 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 175, 281
NdeII GATC 3 cut(s) 17, 449, 783
NlaIII CATG 3 cut(s) 152, 289, 738
NmuCI GTSAC 3 cut(s) 361, 523, 684
NsiI ATGCAT 1 cut(s) 740
NspV TTCGAA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 433, 542
PkrI GCNGC 2 cut(s) 587, 676
PleI GAGTC 2 cut(s) 753, 803
PpsI GAGTC 2 cut(s) 753, 803
PspPI GGNCC 1 cut(s) 566
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 588
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 386, 720, 815
SatI GCNGC 2 cut(s) 586, 675
Sau3AI GATC 3 cut(s) 17, 449, 783
Sau96I GGNCC 1 cut(s) 566
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 2 cut(s) 753, 804
SetI ASST 8 cut(s) 29, 89, 167, 375, 392, 507, 590, 631
SfaNI GCATC 3 cut(s) 271, 661, 694
SfuI TTCGAA 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 391, 814
SmoI CTYRAG 2 cut(s) 391, 814
SpeI ACTAGT 1 cut(s) 664
Sse9I AATT 3 cut(s) 173, 656, 779
SspI AATATT 1 cut(s) 71
SspMI CTAG 4 cut(s) 36, 582, 665, 823
StyI CCWWGG 3 cut(s) 195, 276, 297
TaaI ACNGT 2 cut(s) 403, 535
TaqI TCGA 3 cut(s) 16, 331, 762
TasI AATT 3 cut(s) 173, 656, 779
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 2 cut(s) 433, 542
Tru1I TTAA 3 cut(s) 386, 720, 815
Tru9I TTAA 3 cut(s) 386, 720, 815
TscAI CASTG 3 cut(s) 408, 540, 552
TseFI GTSAC 3 cut(s) 361, 523, 684
TseI GCWGC 2 cut(s) 585, 674
Tsp45I GTSAC 3 cut(s) 361, 523, 684
TspDTI ATGAA 3 cut(s) 81, 547, 659
TspRI CASTG 3 cut(s) 408, 540, 552
Vha464I CTTAAG 1 cut(s) 814
XapI RAATTY 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 4 cut(s) 36, 582, 665, 823
ZrmI AGTACT 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.