MD04G1025100.v1.1

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017106
Physical Location & Seq
Forward (+)
2929143 .. 2930913
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1025100.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGCTGGAGTTGGAGTTGCAGAAAGAGAAGGTGTTACCCTGCAGGAACTGAAGAAGAAAATGGCTGAGTTGTCAAGGGAGAGAGACTGGGATCAGTTTCATAGCCCTAGAAATCTGCTTTTGGCTCTGGTGGGAGAAGTGGGAGAGCTATCAGAGATATTTCAGTGGAAAGCAGAGGTTCCAAGAGGACTGCCATACTGGAAAGAGGAAGAGAAGCAACACCTGGGGGAAGTGCTCTCAGATGTGTTGCTCTACCTGGTTAGGCTCTCTGAAGTTTGTGGCATTGATCTTGGTAAAGCCGCACCACGAAAGCTGGAGCTCAATGCCATCAAATACCAAGTCAAGCTTTGCAAGGGCTCCTCCAAAAAGTACACGCAGCTCAATGCAGAAGATAATACTACCATGTGTTGCAGTGATCATGGCGTGTCAGGCACCAAAAACAGTAGTTGTGAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

153

Amino Acids

17.08

Weight (kDa)

6.33

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG-like PF12643 46 - 127 5.1e-06 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017106)

Species Orthologous Gene IDs
malus_domestica MD04G1025100.v1.1 MD04G1025300.v1.1
pyrus_communis pycom04g02150
rosa_chinensis RchiOBHm_Chr4g0411401
rosa_laevigata RLG00000008359
rosa_multiflora Rmu_co8074190.1_g000001 Rmu_sc0001982.1_g000008
rosa_roxburghii Rroxscaffold_5G00355990
rosa_rugosa Rorug04G0109200
rosa_samantha Rh4AG167600 Rh4CG179500 Rh4DG162400
rosa_wichuraiana Rw4G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AciI CCGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 71, 291
AfaI GTAC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 222, 255
AluBI AGCT 5 cut(s) 148, 313, 319, 346, 379
AluI AGCT 5 cut(s) 148, 313, 319, 346, 379
Alw21I GWGCWC 2 cut(s) 237, 321
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 376
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 2 cut(s) 321, 359
Bbv12I GWGCWC 2 cut(s) 237, 321
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 224, 257
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 300, 377
BlsI GCNGC 2 cut(s) 301, 378
Bme1390I CCNGG 2 cut(s) 224, 257
BmiI GGNNCC 3 cut(s) 180, 358, 433
BmrFI CCNGG 2 cut(s) 224, 257
BmrI ACTGGG 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 97
BpmI CTGGAG 2 cut(s) 27, 335
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 92, 203
BseBI CCWGG 2 cut(s) 224, 257
BseDI CCNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 57, 252
BseNI ACTGG 2 cut(s) 92, 203
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 2 cut(s) 237, 321
BsmAI GTCTC 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 237, 321, 359
Bsp143I GATC 3 cut(s) 91, 286, 415
BspACI CCGC 1 cut(s) 300
BspCNI CTCAG 2 cut(s) 58, 251
BspLI GGNNCC 3 cut(s) 180, 358, 433
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 431
BsrI ACTGG 2 cut(s) 92, 203
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 3 cut(s) 91, 286, 415
Bst2UI CCWGG 2 cut(s) 224, 257
Bst4CI ACNGT 2 cut(s) 443, 456
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 66, 238
BstKTI GATC 3 cut(s) 94, 289, 418
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 91, 286, 415
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 2 cut(s) 224, 257
BstSCI CCNGG 2 cut(s) 222, 255
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 170, 418
CaiI CAGNNNCTG 1 cut(s) 49
CsiI ACCWGGT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 403, 419
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 66, 238
DpnI GATC 3 cut(s) 93, 288, 417
DpnII GATC 3 cut(s) 91, 286, 415
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 319
Eco24I GRGCYC 2 cut(s) 321, 359
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 71, 291
EcoICRI GAGCTC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 222, 255
EcoT38I GRGCYC 2 cut(s) 321, 359
FaeI CATG 2 cut(s) 406, 422
FaiI YATR 4 cut(s) 102, 196, 404, 420
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 2 cut(s) 402, 418
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 300, 377
FriOI GRGCYC 2 cut(s) 321, 359
Fsp4HI GCNGC 2 cut(s) 300, 377
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 300, 377
GsuI CTGGAG 2 cut(s) 27, 335
Hin1II CATG 2 cut(s) 406, 422
HindIII AAGCTT 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 372, 452
Hpy188I TCNGA 3 cut(s) 154, 241, 271
Hpy8I GTNNAC 2 cut(s) 372, 452
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 443, 456
HpyCH4V TGCA 5 cut(s) 20, 43, 351, 386, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 2 cut(s) 66, 238
Hsp92II CATG 2 cut(s) 406, 422
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 91, 286, 415
LmnI GCTCC 2 cut(s) 316, 362
Lsp1109I GCAGC 1 cut(s) 388
MabI ACCWGGT 1 cut(s) 255
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 93, 288, 417
MboI GATC 3 cut(s) 91, 286, 415
MboII GAAGA 4 cut(s) 64, 67, 221, 401
MhlI GDGCHC 3 cut(s) 237, 321, 359
MnlI CCTC 4 cut(s) 169, 179, 199, 370
MspR9I CCNGG 2 cut(s) 224, 257
MvaI CCWGG 2 cut(s) 224, 257
MwoI GCNNNNNNNGC 1 cut(s) 429
NdeII GATC 3 cut(s) 91, 286, 415
NlaIII CATG 2 cut(s) 406, 422
NlaIV GGNNCC 3 cut(s) 180, 358, 433
PkrI GCNGC 2 cut(s) 301, 378
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 222, 255
PspGI CCWGG 2 cut(s) 222, 255
PspN4I GGNNCC 3 cut(s) 180, 358, 433
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 2 cut(s) 300, 377
Sau3AI GATC 3 cut(s) 91, 286, 415
SbfI CCTGCAGG 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 224, 257
SdaI CCTGCAGG 1 cut(s) 45
SduI GDGCHC 3 cut(s) 237, 321, 359
SetI ASST 9 cut(s) 34, 150, 180, 225, 258, 315, 321, 348, 381
SexAI ACCWGGT 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 41
Sse8387I CCTGCAGG 1 cut(s) 45
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 222, 255
TaaI ACNGT 2 cut(s) 443, 456
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 302
TscAI CASTG 2 cut(s) 170, 418
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 2 cut(s) 170, 418
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.