RLG00000008359

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017106
Physical Location & Seq
Forward (+)
29429924 .. 29431710
1787 bp
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UTR
Exon/CDS
Intron
RLM00000008359

Sequence Viewer

Length: 438 bp
ATGGCTGAAAGAGAAGGCGTCAACCTGGAAGAGCTGAAGAAGAAAATGGCCGAGCTTGCCAGGGAAAGGGACTGGGATCACATTCATAGCCCTAGAAATCTACTTTTGGCTCTGGTGGCAGAAGTAGGAGGGGTGTCTGAGATATTTCAGTGGAAAGGAGAGGTTCAAAGAGGACTCCCTGATTGGAAAGATGAAGAGAAGCAACACCTGGGGGAAGAGCTCTCAGACGTGTTACTCTACCTGGTGAGGCTCTCTGACGTTTGTGGCATTGACCTTGGTAAAGCTGCACTTGCTAAGCTGGAGATGAATGCCCTCAAATACCAAGTCAAGCTTTGCAAGGGTTCCTCCAAAAAGTACACGCAACTCAAAGCAGAAGACAAGGATGGCAACACCAGTACTGATGGTGCTAAACATATCTCTGATCCTCATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

146

Amino Acids

16.28

Weight (kDa)

5.57

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG-like PF12643 47 - 122 4.6e-07 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017106)

Species Orthologous Gene IDs
malus_domestica MD04G1025100.v1.1 MD04G1025300.v1.1
pyrus_communis pycom04g02150
rosa_chinensis RchiOBHm_Chr4g0411401
rosa_laevigata RLG00000008359
rosa_multiflora Rmu_co8074190.1_g000001 Rmu_sc0001982.1_g000008
rosa_roxburghii Rroxscaffold_5G00355990
rosa_rugosa Rorug04G0109200
rosa_samantha Rh4AG167600 Rh4CG179500 Rh4DG162400
rosa_wichuraiana Rw4G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 84, 416
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 356, 397
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 167
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 4 cut(s) 24, 59, 207, 240
AluBI AGCT 6 cut(s) 34, 55, 220, 284, 298, 331
AluI AGCT 6 cut(s) 34, 55, 220, 284, 298, 331
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 2 cut(s) 84, 416
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AsuHPI GGTGA 1 cut(s) 256
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 377, 395
BciT130I CCWGG 4 cut(s) 26, 61, 209, 242
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 4 cut(s) 26, 61, 209, 242
BmgBI CACGTC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 4 cut(s) 26, 61, 209, 242
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 60, 208, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 77, 393
BseBI CCWGG 4 cut(s) 26, 61, 209, 242
BseDI CCNNGG 3 cut(s) 60, 208, 274
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 129, 237
BseNI ACTGG 2 cut(s) 77, 393
BseXI GCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 222
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 76, 421
Bsp1720I GCTNAGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 130, 236
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 84, 416
BspQI GCTCTTC 2 cut(s) 24, 210
BsrI ACTGG 2 cut(s) 77, 393
BssECI CCNNGG 3 cut(s) 60, 208, 274
BssMI GATC 2 cut(s) 76, 421
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 4 cut(s) 26, 61, 209, 242
Bst6I CTCTTC 3 cut(s) 24, 189, 210
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 138, 223, 294, 435
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 2 cut(s) 79, 424
BstMBI GATC 2 cut(s) 76, 421
BstMWI GCNNNNNNNGC 3 cut(s) 56, 116, 290
BstNI CCWGG 4 cut(s) 26, 61, 209, 242
BstSCI CCNGG 4 cut(s) 24, 59, 207, 240
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 427
CseI GACGC 1 cut(s) 7
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 355, 396
CviAII CATG 1 cut(s) 428
CviQI GTAC 2 cut(s) 355, 396
DdeI CTNAG 4 cut(s) 138, 223, 294, 435
DpnI GATC 2 cut(s) 78, 423
DpnII GATC 2 cut(s) 76, 421
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 24, 189, 210
EarI CTCTTC 3 cut(s) 24, 189, 210
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 4 cut(s) 24, 59, 207, 240
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 431
FaiI YATR 3 cut(s) 87, 414, 429
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 315, 347
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 431
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 174
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 22, 357
Hpy188I TCNGA 4 cut(s) 139, 226, 256, 421
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 2 cut(s) 22, 357
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 2 cut(s) 228, 258
HpyCH4V TGCA 2 cut(s) 287, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 116, 290
HpyF3I CTNAG 4 cut(s) 138, 223, 294, 435
HpySE526I ACGT 2 cut(s) 228, 258
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 431
Kzo9I GATC 2 cut(s) 76, 421
LguI GCTCTTC 2 cut(s) 24, 210
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 228, 258
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 78, 423
MboI GATC 2 cut(s) 76, 421
MboII GAAGA 6 cut(s) 41, 49, 52, 206, 227, 386
MhlI GDGCHC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 7 cut(s) 122, 154, 164, 240, 323, 355, 435
MspR9I CCNGG 4 cut(s) 26, 61, 209, 242
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 4 cut(s) 26, 61, 209, 242
MwoI GCNNNNNNNGC 3 cut(s) 56, 116, 290
NdeII GATC 2 cut(s) 76, 421
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 1 cut(s) 343
NmeAIII GCCGAG 1 cut(s) 76
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 2 cut(s) 24, 210
PctI GAATGC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 24, 59, 207, 240
PspGI CCWGG 4 cut(s) 24, 59, 207, 240
PspN4I GGNNCC 1 cut(s) 343
RsaI GTAC 2 cut(s) 356, 397
RsaNI GTAC 2 cut(s) 355, 396
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 24, 210
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 76, 421
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 4 cut(s) 26, 61, 209, 242
SduI GDGCHC 1 cut(s) 222
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 1 cut(s) 421
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 4 cut(s) 24, 59, 207, 240
StyI CCWWGG 1 cut(s) 274
TaiI ACGT 2 cut(s) 231, 261
TatI WGTACW 2 cut(s) 354, 395
TscAI CASTG 1 cut(s) 155
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 74, 207, 320
TspRI CASTG 1 cut(s) 155
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.