pycom04g02150

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0017106
Physical Location & Seq
Forward (+)
1924574 .. 1926543
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02150.2

Sequence Viewer

Length: 471 bp
ATGGATGGAGCTGGTATTGGAGCTGCAGTTGCAGAAAGAGAAGGTGTTACCCTGCAGGAGCTGAAGAAGAAAATGGCTGAGTTTTCAAGGGAGAGAGACTGGGATCAATTTCATAGCCCTAGAAATCTACTTTTGGCTCTGGTGGGAGAAGTGGGAGAGCTCTCAGAGATATTTCAGTGGAAAGGAGAGGTGCCAAGAGGACTGCCATACTGGAAAGAGGAAGAGAAGCAACACCTGGGGGAAGAGCTCTCAGATGTGTTGCTCTACCTTGTTAGGCTCTCTGACGTTTGTGGCATTGATCTTGGAAAAACTGCACTCCGAAAGCTGGAGCTCAATGCCAACAAATACCAAGCCAGGCTTTGCAAGGGCTCCTCCAAAAAGAACACGCAGCTGAATGCAGAAGATAATGCCATTATGTGTAGTAGTGATCATGGCGTGTCAGGCACCAAAAACCGCAGTTGTGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

157

Amino Acids

17.45

Weight (kDa)

5.7

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017106)

Species Orthologous Gene IDs
malus_domestica MD04G1025100.v1.1 MD04G1025300.v1.1
pyrus_communis pycom04g02150
rosa_chinensis RchiOBHm_Chr4g0411401
rosa_laevigata RLG00000008359
rosa_multiflora Rmu_co8074190.1_g000001 Rmu_sc0001982.1_g000008
rosa_roxburghii Rroxscaffold_5G00355990
rosa_rugosa Rorug04G0109200
rosa_samantha Rh4AG167600 Rh4CG179500 Rh4DG162400
rosa_wichuraiana Rw4G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 190, 443
AciI CCGC 1 cut(s) 454
AclWI GGATC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 2 cut(s) 234, 353
AluBI AGCT 8 cut(s) 11, 23, 61, 160, 247, 325, 331, 391
AluI AGCT 8 cut(s) 11, 23, 61, 160, 247, 325, 331, 391
Alw21I GWGCWC 3 cut(s) 162, 249, 333
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 23, 388
BanI GGYRCC 2 cut(s) 190, 443
BanII GRGCYC 4 cut(s) 162, 249, 333, 371
Bbv12I GWGCWC 3 cut(s) 162, 249, 333
BbvI GCAGC 2 cut(s) 10, 400
BciT130I CCWGG 2 cut(s) 236, 355
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 24, 53
BisI GCNGC 2 cut(s) 24, 389
BlsI GCNGC 2 cut(s) 25, 390
Bme1390I CCNGG 2 cut(s) 236, 355
BmiI GGNNCC 3 cut(s) 192, 370, 445
BmrFI CCNGG 2 cut(s) 236, 355
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 104, 215
BseBI CCWGG 2 cut(s) 236, 355
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 69, 177, 264
BseNI ACTGG 2 cut(s) 104, 215
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 10, 400
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 2 cut(s) 190, 443
BsiHKAI GWGCWC 3 cut(s) 162, 249, 333
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 400
Bsp1286I GDGCHC 4 cut(s) 162, 249, 333, 371
Bsp143I GATC 3 cut(s) 103, 298, 427
BspACI CCGC 1 cut(s) 454
BspCNI CTCAG 3 cut(s) 70, 176, 263
BspLI GGNNCC 3 cut(s) 192, 370, 445
BspMAI CTGCAG 2 cut(s) 28, 57
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 237
BspT107I GGYRCC 2 cut(s) 190, 443
BsrI ACTGG 2 cut(s) 104, 215
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 103, 298, 427
Bst2UI CCWGG 2 cut(s) 236, 355
Bst4CI ACNGT 1 cut(s) 468
Bst6I CTCTTC 2 cut(s) 216, 237
BstDEI CTNAG 3 cut(s) 78, 163, 250
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 106, 301, 430
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 103, 298, 427
BstMWI GCNNNNNNNGC 2 cut(s) 29, 441
BstNI CCWGG 2 cut(s) 236, 355
BstSCI CCNGG 2 cut(s) 234, 353
BstSFI CTRYAG 2 cut(s) 24, 53
BstV1I GCAGC 2 cut(s) 10, 400
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 61
CviAII CATG 1 cut(s) 431
DdeI CTNAG 3 cut(s) 78, 163, 250
DpnI GATC 3 cut(s) 105, 300, 429
DpnII GATC 3 cut(s) 103, 298, 427
Eam1104I CTCTTC 2 cut(s) 216, 237
EarI CTCTTC 2 cut(s) 216, 237
Ecl136II GAGCTC 3 cut(s) 160, 247, 331
Eco24I GRGCYC 4 cut(s) 162, 249, 333, 371
Eco53kI GAGCTC 3 cut(s) 160, 247, 331
Eco57I CTGAAG 1 cut(s) 83
EcoICRI GAGCTC 3 cut(s) 160, 247, 331
EcoRII CCWGG 2 cut(s) 234, 353
EcoT38I GRGCYC 4 cut(s) 162, 249, 333, 371
FaeI CATG 1 cut(s) 434
FaiI YATR 4 cut(s) 114, 208, 416, 432
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 24, 389
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 4 cut(s) 162, 249, 333, 371
Fsp4HI GCNGC 2 cut(s) 24, 389
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 24, 389
GsuI CTGGAG 1 cut(s) 347
Hin1II CATG 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 4 cut(s) 166, 253, 283, 320
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 26, 32, 55, 314, 363, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 441
HpyF3I CTNAG 3 cut(s) 78, 163, 250
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 434
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 103, 298, 427
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 5 cut(s) 8, 20, 58, 328, 374
Lsp1109I GCAGC 2 cut(s) 10, 400
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 105, 300, 429
MboI GATC 3 cut(s) 103, 298, 427
MboII GAAGA 5 cut(s) 76, 79, 233, 254, 413
MhlI GDGCHC 4 cut(s) 162, 249, 333, 371
MluCI AATT 1 cut(s) 107
MnlI CCTC 4 cut(s) 181, 191, 211, 382
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 2 cut(s) 236, 355
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 236, 355
MwoI GCNNNNNNNGC 2 cut(s) 29, 441
NdeII GATC 3 cut(s) 103, 298, 427
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 3 cut(s) 192, 370, 445
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 400
PkrI GCNGC 2 cut(s) 25, 390
Psp124BI GAGCTC 3 cut(s) 162, 249, 333
Psp6I CCWGG 2 cut(s) 234, 353
PspGI CCWGG 2 cut(s) 234, 353
PspN4I GGNNCC 3 cut(s) 192, 370, 445
PstI CTGCAG 2 cut(s) 28, 57
PstNI CAGNNNCTG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 391
SacI GAGCTC 3 cut(s) 162, 249, 333
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 2 cut(s) 24, 389
Sau3AI GATC 3 cut(s) 103, 298, 427
SbfI CCTGCAGG 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 236, 355
SdaI CCTGCAGG 1 cut(s) 57
SduI GDGCHC 4 cut(s) 162, 249, 333, 371
SfcI CTRYAG 2 cut(s) 24, 53
Sse8387I CCTGCAGG 1 cut(s) 57
Sse9I AATT 1 cut(s) 107
SsiI CCGC 1 cut(s) 454
SspMI CTAG 1 cut(s) 120
SstI GAGCTC 3 cut(s) 162, 249, 333
StyD4I CCNGG 2 cut(s) 234, 353
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 1 cut(s) 288
TasI AATT 1 cut(s) 107
TscAI CASTG 1 cut(s) 182
TseI GCWGC 2 cut(s) 23, 388
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 182
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.