Rroxscaffold_5G00355990

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017106
Physical Location & Seq
Reverse (-)
35130643 .. 35132875
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355990.1

Sequence Viewer

Length: 438 bp
ATGGCTGAAAGAGAAGGCGTTAACCTGGAAGAGCTGAAGAAGAAAATGGCCGAGCTTGCCAGGGAAAGGGACTGGGATCACATTCATAGCCCTAGAAATCTACTTTTGGCTCTGGTGGGAGAAGTAGGAGAGGTATCTGAGATATTTCAGTGGAAAGGAGAGGTTCAAAGAGGACTCCCTGATTGGAAAGATGAAGAGAAGCAACACCTGGGGGAAGAGCTCTCAGACGTGTTACTCTACCTGGTGAGGCTCTCTGACGTTTGTGGCATTGATCTTGGCAAGGCTGCGCTTGCTAAGCTGGAGATGAATGCCGTCAAATACCAAGTCAAGCTTTGCAAGGGTTCTTCCAAAAAGTACACGCAACTCAAAGCAGAAGACAAGGATGGCAACACCAGTACTGATGGTGCTCAACATATCTCTGGTCCTCATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

145

Amino Acids

16.27

Weight (kDa)

5.41

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 30 - 96 3.4e-06 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 41 - 122 3.8e-08 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017106)

Species Orthologous Gene IDs
malus_domestica MD04G1025100.v1.1 MD04G1025300.v1.1
pyrus_communis pycom04g02150
rosa_chinensis RchiOBHm_Chr4g0411401
rosa_laevigata RLG00000008359
rosa_multiflora Rmu_co8074190.1_g000001 Rmu_sc0001982.1_g000008
rosa_roxburghii Rroxscaffold_5G00355990
rosa_rugosa Rorug04G0109200
rosa_samantha Rh4AG167600 Rh4CG179500 Rh4DG162400
rosa_wichuraiana Rw4G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 356, 397
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 167
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 4 cut(s) 24, 59, 207, 240
AluBI AGCT 5 cut(s) 34, 55, 220, 298, 331
AluI AGCT 5 cut(s) 34, 55, 220, 298, 331
Alw21I GWGCWC 2 cut(s) 222, 409
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 222, 409
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 377, 395
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 4 cut(s) 26, 61, 209, 242
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 4 cut(s) 26, 61, 209, 242
Bme18I GGWCC 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 4 cut(s) 26, 61, 209, 242
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 60, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 77, 393
BseBI CCWGG 4 cut(s) 26, 61, 209, 242
BseDI CCNNGG 2 cut(s) 60, 208
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 129, 237
BseNI ACTGG 2 cut(s) 77, 393
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 222, 409
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 222, 409
Bsp143I GATC 2 cut(s) 76, 271
Bsp1720I GCTNAGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 130, 236
BspHI TCATGA 1 cut(s) 427
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 2 cut(s) 24, 210
BsrI ACTGG 2 cut(s) 77, 393
BssECI CCNNGG 2 cut(s) 60, 208
BssMI GATC 2 cut(s) 76, 271
Bst2UI CCWGG 4 cut(s) 26, 61, 209, 242
Bst6I CTCTTC 3 cut(s) 24, 189, 210
BstC8I GCNNGC 2 cut(s) 57, 291
BstDEI CTNAG 4 cut(s) 138, 223, 294, 435
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 2 cut(s) 79, 274
BstMBI GATC 2 cut(s) 76, 271
BstMWI GCNNNNNNNGC 3 cut(s) 56, 290, 295
BstNI CCWGG 4 cut(s) 26, 61, 209, 242
BstSCI CCNGG 4 cut(s) 24, 59, 207, 240
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 57, 291
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 422
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 355, 396
CviAII CATG 1 cut(s) 428
CviQI GTAC 2 cut(s) 355, 396
DdeI CTNAG 4 cut(s) 138, 223, 294, 435
DpnI GATC 2 cut(s) 78, 273
DpnII GATC 2 cut(s) 76, 271
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 24, 189, 210
EarI CTCTTC 3 cut(s) 24, 189, 210
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 220
EcoRII CCWGG 4 cut(s) 24, 59, 207, 240
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 1 cut(s) 431
FaiI YATR 3 cut(s) 87, 414, 429
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 1 cut(s) 289
Hin1II CATG 1 cut(s) 431
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 174
HpaI GTTAAC 1 cut(s) 22
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 22, 357
Hpy188I TCNGA 3 cut(s) 139, 226, 256
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 2 cut(s) 22, 357
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 2 cut(s) 228, 258
HpyCH4V TGCA 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 290, 295
HpyF3I CTNAG 4 cut(s) 138, 223, 294, 435
HpySE526I ACGT 2 cut(s) 228, 258
Hsp92II CATG 1 cut(s) 431
HspAI GCGC 1 cut(s) 287
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 76, 271
LguI GCTCTTC 2 cut(s) 24, 210
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 228, 258
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 78, 273
MboI GATC 2 cut(s) 76, 271
MboII GAAGA 7 cut(s) 41, 49, 52, 206, 227, 336, 386
MhlI GDGCHC 2 cut(s) 222, 409
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 5 cut(s) 124, 154, 164, 240, 435
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 4 cut(s) 26, 61, 209, 242
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 4 cut(s) 26, 61, 209, 242
MwoI GCNNNNNNNGC 3 cut(s) 56, 290, 295
NdeII GATC 2 cut(s) 76, 271
NlaIII CATG 1 cut(s) 431
NmeAIII GCCGAG 1 cut(s) 76
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 2 cut(s) 24, 210
PctI GAATGC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 24, 59, 207, 240
PspGI CCWGG 4 cut(s) 24, 59, 207, 240
PspPI GGNCC 1 cut(s) 422
RsaI GTAC 2 cut(s) 356, 397
RsaNI GTAC 2 cut(s) 355, 396
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 24, 210
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 76, 271
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 4 cut(s) 26, 61, 209, 242
SduI GDGCHC 2 cut(s) 222, 409
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 1 cut(s) 421
SinI GGWCC 1 cut(s) 422
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 4 cut(s) 24, 59, 207, 240
TaiI ACGT 2 cut(s) 231, 261
TatI WGTACW 2 cut(s) 354, 395
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 155
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 74, 207, 320
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 422
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.