Rmu_co8074190.1_g000001

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8074190.1
OG0017106
Physical Location & Seq
Reverse (-)
2 .. 313
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8074190.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atggtgtttcaggtgggagaagtaggagaggtatctgagatatttcagtggaaaggagaggttcagagaggactccctgattggaaagatgaagagaagcaacacctgggggaagagctctcagacgtgttactctacctggtgaggctctctgacgtttgtggcattgatcttggtaaagctgcacttgctaagctggagatgaatgccctcaaataccaagtcaagctttgcaagggttcctccaaaaagtacacgcaactcaaagcagaagacaaggatggcaacaccagtactgatggtgctcaacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

5.15

Isoelectric Point (pI)

8.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017106)

Species Orthologous Gene IDs
malus_domestica MD04G1025100.v1.1 MD04G1025300.v1.1
pyrus_communis pycom04g02150
rosa_chinensis RchiOBHm_Chr4g0411401
rosa_laevigata RLG00000008359
rosa_multiflora Rmu_co8074190.1_g000001 Rmu_sc0001982.1_g000008
rosa_roxburghii Rroxscaffold_5G00355990
rosa_rugosa Rorug04G0109200
rosa_samantha Rh4AG167600 Rh4CG179500 Rh4DG162400
rosa_wichuraiana Rw4G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 254, 295
AflIII ACRYGT 1 cut(s) 126
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 2 cut(s) 105, 138
AluBI AGCT 4 cut(s) 118, 182, 196, 229
AluI AGCT 4 cut(s) 118, 182, 196, 229
Alw21I GWGCWC 2 cut(s) 120, 307
ApeKI GCWGC 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsuHPI GGTGA 1 cut(s) 154
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 2 cut(s) 120, 307
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 275, 293
BciT130I CCWGG 2 cut(s) 107, 140
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 107, 140
BmgBI CACGTC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 107, 140
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 107, 140
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 27, 135
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 120, 307
BsmI GAATGC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 120, 307
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 28, 134
BspLI GGNNCC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 107, 140
Bst6I CTCTTC 2 cut(s) 87, 108
BstDEI CTNAG 3 cut(s) 36, 121, 192
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 107, 140
BstSCI CCNGG 2 cut(s) 105, 138
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 279
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 53
CsiI ACCWGGT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 253, 294
CviJI RGCY 5 cut(s) 118, 148, 182, 196, 229
CviKI_1 RGCY 5 cut(s) 118, 148, 182, 196, 229
CviQI GTAC 2 cut(s) 253, 294
DdeI CTNAG 3 cut(s) 36, 121, 192
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 87, 108
EarI CTCTTC 2 cut(s) 87, 108
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 105, 138
EcoT38I GRGCYC 1 cut(s) 120
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 213, 245
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 72
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 4 cut(s) 37, 66, 124, 154
Hpy8I GTNNAC 1 cut(s) 255
HpyCH4IV ACGT 2 cut(s) 126, 156
HpyCH4V TGCA 2 cut(s) 185, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 3 cut(s) 36, 121, 192
HpySE526I ACGT 2 cut(s) 126, 156
Kzo9I GATC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 7 cut(s) 90, 92, 119, 125, 152, 182, 304
Lsp1109I GCAGC 1 cut(s) 169
MabI ACCWGGT 1 cut(s) 138
MaeII ACGT 2 cut(s) 126, 156
MaeIII GTNAC 1 cut(s) 129
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 104, 125, 284
MhlI GDGCHC 2 cut(s) 120, 307
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 6 cut(s) 22, 52, 62, 138, 221, 253
MspR9I CCNGG 2 cut(s) 107, 140
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 107, 140
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 105, 138
PspGI CCWGG 2 cut(s) 105, 138
PspN4I GGNNCC 1 cut(s) 241
RsaI GTAC 2 cut(s) 254, 295
RsaNI GTAC 2 cut(s) 253, 294
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 107, 140
SduI GDGCHC 2 cut(s) 120, 307
SexAI ACCWGGT 1 cut(s) 138
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 105, 138
TaiI ACGT 2 cut(s) 129, 159
TatI WGTACW 2 cut(s) 252, 293
TscAI CASTG 1 cut(s) 53
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 105, 218
TspRI CASTG 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.