Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007433

Physical Location & Seq

Genomic Coordinates Reverse (-)

5217650 .. 5223225

Gene Structure 5576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1044800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGCCATCTCTGCCCAAAATAAGAGAAAGGGTCCGAAAGCAAACAAGGCTTCCCCCAAAAAGAGGCAAAAGAAAGGGTCTTTCGCCCCTAAAACCCCGAAGGAACCTGAGCTTTCGGACCATTACGAAAGCTCGGATGAACAAGAGGTAGAGGAACAACATGTAGAATTTGATGGAGATGAGGCAGGGTCTGGTTCAGATTCCGACAGTCTTTTCGGTGATGATCCCCTTGCTGATGATGATGCTTCTCTCCAAGGAAGTGACGATGATGCGAACGGTTCAGGTTTGGGTTCTGATTCAGGTTCTGATTCAGATGAATCTGATATTGAGAAAAAATCAAGACTTATTGATGAGAAGAGGACAAAGGAAGAAAAAGAAGGTGAAGAGGAACTGCAGCTAAACATTAAGGAAGAATCTGATGAGTTCAGATTACCAACCCAAGAGGAACTGGAAGAAGAGGCACATCGGCCTCCTGATCTTCCAAATCTCCTGAGGAGGATAAAAGAGATTGTTCGAGTGCTCTCAAACTTCAAGGCTTTGAGGCAAGATGGGGCACCAAGGAAGGATTATGTTGAGCAGCTTAAGAGGGATTTAATTTTGTACTATGGCTACAATAGCTTTTTAATTGGGGCTTTAGTAGAGATGTTTCCGGCTGTTGAGTTGGTGGAACTCATAGAAGCTTTTGAAAAACCTCGACCAATGTGTCTCCGAACTAATACGCTAAAGACACGAAGGAGGGATTTGGCAGATGTTTTAATCAACAGAGGAGTAAACCTAGCTCCCTTAAGCGAGTGGTCGAAAGTTGGATTGGTTGTGTATGATTTTCAAGTTCCAATTGGTGCCACTCCTGAATATATGGCTGGTTATTACATGCTGCAAAGTGCAAGCTCCTTTTTGCCTGTCATGGCCCTTGCTCCTCAAGAAAAGGAACGAATTGTTGATATGGCCGCTGCACCTGGTGGTAAAACAACTTATATTGCCGCTCTAATGAAAAATAGTGGAATAATTTTTGCCAATGAAATGAAGGAGCCAAGGCTCAAGTCACTCACTGCTAATTTGCACCGCATGGGGGTGACAAACACAGTAGTTTGTAACTATGATGGCAAAGAGCTCCCTAAGGTTCTGGGAGTCAACGCAGTTGATAGAGTTCTATTAGATGCTCCTTGCAGTGGGACAGGGGTTATATCTAAAGATGAGTCTGTTAAAACTTCTAAAAGCTCTGATGAAATTCATAAATGTGCTCACCTGCAGAAGCAACTGATACTTGCTGCCATTGACATGGTGGATGCAAATTCAAAATCCGGGGGATACATCGTGTACTCCACGTGCTCCATTTTGGTTGCTGAGAATGAAGCAGTAATTGACTATGCACTCAAAAAGAGAAATGTTAAACTTGTCCCATGTGGACTTAGCTTTGGGGTTAAAGGGTTTGTCCGGTTCAGGGAACAGCGGTTTCACCCATCATTAGAGAACACGAGGCGATTTTACCCTCATGTTCACAATATGGATGGCTTTTTTGTGGCGAAGCTGCAAAAGATGAGCAATTTGAAGCCATCTGCAGAAAAGTCTGAACTCGGTGAAACAGTGGAGAAAGCCCAAAACATGACTGAAGAAGAGAATGCTGAGGAAGATGACCAACAGATGTTGACAGAGGATGATACTAAAATTGAAAATAAGGTTCTGGAAAAAGAGGTTGCTGAAAATGGGAAACTAAAATCTCCAGGCACTACCAACCAAAAGAAGGAATCCCCCGTCACTTTGAAAAGGAGGAAGGGCGCTGGGTTAAGGTCGAAGGATATGAATTTCCCGGCTTTTTTCTCTCATCTGAATGGGAAAACCCCCTTGGAACAAAAACAAGAACAGAAAAAGAAATACCCGAAACTGAAGCACCCTCCTAGAGAGGAAATATCAAAAGCCAGGGAAGAGAAGAGGAGAGCTGTCAGGGAAGGAAAATCTTCCAGCAACAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000154 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008284 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009966 GO:0009987 GO:0010467 GO:0010646 GO:0016043 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042127 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0065003 GO:0065007 GO:0070013 GO:0070475 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F Methyltr_RsmF_N

Protein Analysis

658

Amino Acids

73.56

Weight (kDa)

5.9

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsmF-B_ferredox	PF22458	206 - 271	6.6e-06	Methyltr_RsmF/B-like, ferredoxin-like domain
Methyltr_RsmF_N	PF17125	215 - 295	2.6e-06	N-terminal domain of 16S rRNA methyltransferase RsmF
Methyltr_RsmB-F	PF01189	301 - 511	1.2e-71	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600 AT4G26600
fragaria_vesca	FvH4_4g11570 FvH4_4g11570
malus_domestica	MD04G1044800.v1.1
prunus_persica	Prupe.8G036800_v2.0.a1 Prupe.8G036800_v2.0.a1
pyrus_communis	pycom04g03850
rosa_chinensis	RchiOBHm_Chr4g0408681
rosa_laevigata	RLG00000008641 RLG00000008644
rosa_multiflora	Rmu_sc0002856.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353050
rosa_rugosa	Rorug04G0086600
rosa_samantha	Rh4BG148300 Rh4CG159000 Rh4DG143900
rosa_wichuraiana	Rw4G012220 Rw4G012360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1254
AasI	GACNNNNNNGTC	1 cut(s)	702
Acc36I	ACCTGC	1 cut(s)	1254
AccB1I	GGYRCC	2 cut(s)	553, 839
AccBSI	CCGCTC	1 cut(s)	983
AciI	CCGC	4 cut(s)	948, 981, 1063, 1450
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	3, 945
AcsI	RAATTY	4 cut(s)	167, 1227, 1291, 1801
AcuI	CTGAAG	2 cut(s)	1629, 1904
AcvI	CACGTG	1 cut(s)	1326
AdeI	CACNNNGTG	1 cut(s)	959
AfaI	GTAC	2 cut(s)	602, 1319
AfiI	CCNNNNNNNGG	5 cut(s)	63, 1069, 1169, 1441, 1741
AflII	CTTAAG	2 cut(s)	581, 784
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	7 cut(s)	532, 686, 827, 1296, 1549, 1670, 1762
AjnI	CCWGG	3 cut(s)	955, 1720, 1916
AjuI	GAANNNNNNNTTGG	4 cut(s)	791, 823, 1826, 1858
Alw21I	GWGCWC	4 cut(s)	522, 1113, 1243, 1331
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	2 cut(s)	191, 305
AoxI	GGCC	4 cut(s)	3, 467, 906, 945
ApeKI	GCWGC	6 cut(s)	394, 577, 874, 950, 1268, 1528
ApoI	RAATTY	4 cut(s)	167, 1227, 1291, 1801
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp700I	GAANNNNTTC	1 cut(s)	1954
AspLEI	GCGC	1 cut(s)	1778
AspS9I	GGNCC	3 cut(s)	32, 118, 907
AsuC2I	CCSGG	2 cut(s)	1303, 1808
AsuHPI	GGTGA	6 cut(s)	230, 392, 1084, 1235, 1448, 1589
AvaII	GGWCC	2 cut(s)	32, 118
AxyI	CCTNAGG	2 cut(s)	491, 1116
BaeGI	GKGCMC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	553, 839
BanII	GRGCYC	1 cut(s)	1113
BauI	CACGAG	1 cut(s)	1474
BbrPI	CACGTG	1 cut(s)	1326
Bbv12I	GWGCWC	4 cut(s)	522, 1113, 1243, 1331
BbvCI	CCTCAGC	1 cut(s)	1623
BbvI	GCAGC	6 cut(s)	406, 589, 861, 937, 1255, 1515
BccI	CCATC	7 cut(s)	14, 167, 542, 1094, 1468, 1502, 1561
BciT130I	CCWGG	3 cut(s)	957, 1722, 1918
BciVI	GTATCC	1 cut(s)	1301
BcnI	CCSGG	2 cut(s)	1303, 1808
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	2 cut(s)	776, 1896
BfmI	CTRYAG	3 cut(s)	392, 1247, 1557
BfoI	RGCGCY	1 cut(s)	1779
BfrI	CTTAAG	2 cut(s)	581, 784
BfuAI	ACCTGC	1 cut(s)	1254
BfuI	GTATCC	1 cut(s)	1301
BisI	GCNGC	8 cut(s)	395, 578, 875, 948, 951, 981, 1269, 1529
BlsI	GCNGC	8 cut(s)	396, 579, 876, 949, 952, 982, 1270, 1530
Bme1390I	CCNGG	5 cut(s)	957, 1303, 1722, 1808, 1918
Bme18I	GGWCC	2 cut(s)	32, 118
BmgT120I	GGNCC	3 cut(s)	32, 118, 907
BmiI	GGNNCC	5 cut(s)	33, 105, 555, 841, 1029
BmrFI	CCNGG	5 cut(s)	957, 1303, 1722, 1808, 1918
BmsI	GCATC	4 cut(s)	232, 259, 1147, 1276
BpmI	CTGGAG	1 cut(s)	1704
Bpu10I	CCTNAGC	2 cut(s)	108, 1623
BpuEI	CTTGAG	2 cut(s)	903, 1022
BpuMI	CCSGG	2 cut(s)	1303, 1808
BsaAI	YACGTR	1 cut(s)	1326
BsaJI	CCNNGG	6 cut(s)	253, 557, 1031, 1302, 1842, 1917
BsaWI	WCCGGW	1 cut(s)	1434
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 1069, 1169, 1441, 1741
Bse1I	ACTGG	1 cut(s)	453
Bse21I	CCTNAGG	2 cut(s)	491, 1116
BseBI	CCWGG	3 cut(s)	957, 1722, 1918
BseDI	CCNNGG	6 cut(s)	253, 557, 1031, 1302, 1842, 1917
BseGI	GGATG	4 cut(s)	142, 1291, 1513, 1660
BseLI	CCNNNNNNNGG	5 cut(s)	63, 1069, 1169, 1441, 1741
BseMII	CTCAG	4 cut(s)	99, 482, 1335, 1614
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	4 cut(s)	508, 780, 906, 1945
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	6 cut(s)	406, 589, 861, 937, 1255, 1515
BseYI	CCCAGC	1 cut(s)	1778
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	4 cut(s)	5, 469, 908, 947
BshNI	GGYRCC	2 cut(s)	553, 839
BsiHKAI	GWGCWC	4 cut(s)	522, 1113, 1243, 1331
BsiSI	CCGG	4 cut(s)	650, 1302, 1435, 1808
BslFI	GGGAC	2 cut(s)	1186, 1382
BslI	CCNNNNNNNGG	5 cut(s)	63, 1069, 1169, 1441, 1741
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	2 cut(s)	1186, 1382
BsmI	GAATGC	1 cut(s)	1624
BsnI	GGCC	4 cut(s)	5, 469, 908, 947
Bsp1286I	GDGCHC	5 cut(s)	522, 556, 1113, 1243, 1331
Bsp143I	GATC	2 cut(s)	223, 475
BspACI	CCGC	4 cut(s)	948, 981, 1063, 1450
BspANI	GGCC	4 cut(s)	5, 469, 908, 947
BspCNI	CTCAG	4 cut(s)	100, 483, 1336, 1615
BspLI	GGNNCC	5 cut(s)	33, 105, 555, 841, 1029
BspMAI	CTGCAG	3 cut(s)	396, 1251, 1561
BspMI	ACCTGC	1 cut(s)	1254
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	2 cut(s)	553, 839
BspTI	CTTAAG	2 cut(s)	581, 784
BsrBI	CCGCTC	1 cut(s)	983
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	6 cut(s)	253, 557, 1031, 1302, 1842, 1917
BssMI	GATC	2 cut(s)	223, 475
BssSI	CACGAG	1 cut(s)	1474
BssT1I	CCWWGG	4 cut(s)	253, 557, 1031, 1842
Bst2BI	CACGAG	1 cut(s)	1474
Bst2UI	CCWGG	3 cut(s)	957, 1722, 1918
Bst4CI	ACNGT	4 cut(s)	209, 278, 1084, 1585
Bst6I	CTCTTC	6 cut(s)	350, 378, 450, 1608, 1917, 1922
BstAFI	CTTAAG	2 cut(s)	581, 784
BstBAI	YACGTR	1 cut(s)	1326
BstC8I	GCNNGC	1 cut(s)	886
BstDEI	CTNAG	6 cut(s)	108, 491, 1116, 1344, 1409, 1623
BstF5I	GGATG	4 cut(s)	142, 1291, 1513, 1660
BstH2I	RGCGCY	1 cut(s)	1779
BstHHI	GCGC	1 cut(s)	1778
BstKTI	GATC	2 cut(s)	226, 478
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	2 cut(s)	223, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 47, 615
BstNI	CCWGG	3 cut(s)	957, 1722, 1918
BstNSI	RCATGY	2 cut(s)	164, 874
BstSCI	CCNGG	5 cut(s)	955, 1301, 1720, 1806, 1916
BstSFI	CTRYAG	3 cut(s)	392, 1247, 1557
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	6 cut(s)	406, 589, 861, 937, 1255, 1515
BstXI	CCANNNNNNTGG	1 cut(s)	1279
Bsu36I	CCTNAGG	2 cut(s)	491, 1116
BsuI	GTATCC	1 cut(s)	1301
BsuRI	GGCC	4 cut(s)	5, 469, 908, 947
BtsCI	GGATG	4 cut(s)	142, 1291, 1513, 1660
BtsI	GCAGTG	2 cut(s)	1047, 1174
BtsIMutI	CAGTG	3 cut(s)	1047, 1174, 1590
BveI	ACCTGC	1 cut(s)	1254
Cac8I	GCNNGC	1 cut(s)	886
CaiI	CAGNNNCTG	2 cut(s)	191, 305
CfoI	GCGC	1 cut(s)	1778
Cfr13I	GGNCC	3 cut(s)	32, 118, 907
CsiI	ACCWGGT	1 cut(s)	955
Csp6I	GTAC	2 cut(s)	601, 1318
CviAII	CATG	8 cut(s)	161, 871, 904, 1066, 1279, 1401, 1493, 1603
CviQI	GTAC	2 cut(s)	601, 1318
DdeI	CTNAG	6 cut(s)	108, 491, 1116, 1344, 1409, 1623
DpnI	GATC	2 cut(s)	225, 477
DpnII	GATC	2 cut(s)	223, 475
DraIII	CACNNNGTG	1 cut(s)	959
DrdI	GACNNNNNNGTC	1 cut(s)	702
DseDI	GACNNNNNNGTC	1 cut(s)	702
EaeI	YGGCCR	2 cut(s)	3, 945
Eam1104I	CTCTTC	6 cut(s)	350, 378, 450, 1608, 1917, 1922
EarI	CTCTTC	6 cut(s)	350, 378, 450, 1608, 1917, 1922
Ecl136II	GAGCTC	1 cut(s)	1111
Eco130I	CCWWGG	4 cut(s)	253, 557, 1031, 1842
Eco24I	GRGCYC	1 cut(s)	1113
Eco47I	GGWCC	2 cut(s)	32, 118
Eco53kI	GAGCTC	1 cut(s)	1111
Eco57I	CTGAAG	2 cut(s)	1629, 1904
Eco72I	CACGTG	1 cut(s)	1326
Eco81I	CCTNAGG	2 cut(s)	491, 1116
EcoICRI	GAGCTC	1 cut(s)	1111
EcoRII	CCWGG	3 cut(s)	955, 1720, 1916
EcoT14I	CCWWGG	4 cut(s)	253, 557, 1031, 1842
EcoT38I	GRGCYC	1 cut(s)	1113
ErhI	CCWWGG	4 cut(s)	253, 557, 1031, 1842
FaeI	CATG	8 cut(s)	164, 874, 907, 1069, 1282, 1404, 1496, 1606
FaqI	GGGAC	2 cut(s)	1186, 1382
FatI	CATG	8 cut(s)	160, 870, 903, 1065, 1278, 1400, 1492, 1602
Fnu4HI	GCNGC	8 cut(s)	395, 578, 875, 948, 951, 981, 1269, 1529
FokI	GGATG	4 cut(s)	149, 1298, 1520, 1667
FriOI	GRGCYC	1 cut(s)	1113
Fsp4HI	GCNGC	8 cut(s)	395, 578, 875, 948, 951, 981, 1269, 1529
FspBI	CTAG	2 cut(s)	776, 1896
GlaI	GCGC	1 cut(s)	1777
GluI	GCNGC	8 cut(s)	395, 578, 875, 948, 951, 981, 1269, 1529
GsaI	CCCAGC	1 cut(s)	1782
GsuI	CTGGAG	1 cut(s)	1704
HaeII	RGCGCY	1 cut(s)	1779
HaeIII	GGCC	4 cut(s)	5, 469, 908, 947
HapII	CCGG	4 cut(s)	650, 1302, 1435, 1808
HhaI	GCGC	1 cut(s)	1778
Hin1II	CATG	8 cut(s)	164, 874, 907, 1069, 1282, 1404, 1496, 1606
Hin6I	GCGC	1 cut(s)	1776
HinP1I	GCGC	1 cut(s)	1776
HincII	GTYRAC	2 cut(s)	1132, 1647
HindII	GTYRAC	2 cut(s)	1132, 1647
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	8 cut(s)	200, 296, 308, 317, 413, 1128, 1196, 1745
HpaII	CCGG	4 cut(s)	650, 1302, 1435, 1808
HphI	GGTGA	6 cut(s)	230, 392, 1084, 1235, 1448, 1589
Hpy166II	GTNNAC	6 cut(s)	772, 1132, 1318, 1406, 1498, 1647
Hpy188III	TCNNGA	6 cut(s)	339, 473, 490, 848, 920, 1682
Hpy8I	GTNNAC	6 cut(s)	772, 1132, 1318, 1406, 1498, 1647
HpyAV	CCTTC	9 cut(s)	94, 371, 556, 726, 1018, 1735, 1765, 1786, 1940
HpyCH4III	ACNGT	4 cut(s)	209, 278, 1084, 1585
HpyCH4IV	ACGT	1 cut(s)	1325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 47, 615
HpyF3I	CTNAG	6 cut(s)	108, 491, 1116, 1344, 1409, 1623
HpySE526I	ACGT	1 cut(s)	1325
Hsp92II	CATG	8 cut(s)	164, 874, 907, 1069, 1282, 1404, 1496, 1606
HspAI	GCGC	1 cut(s)	1776
Kzo9I	GATC	2 cut(s)	223, 475
LmnI	GCTCC	7 cut(s)	784, 893, 919, 1027, 1116, 1165, 1334
Lsp1109I	GCAGC	6 cut(s)	406, 589, 861, 937, 1255, 1515
LweI	GCATC	4 cut(s)	232, 259, 1147, 1276
MabI	ACCWGGT	1 cut(s)	955
MaeI	CTAG	2 cut(s)	776, 1896
MaeII	ACGT	1 cut(s)	1325
MaeIII	GTNAC	5 cut(s)	260, 1041, 1072, 1091, 1753
MalI	GATC	2 cut(s)	225, 477
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	2 cut(s)	223, 475
MfeI	CAATTG	1 cut(s)	834
MhlI	GDGCHC	5 cut(s)	522, 556, 1113, 1243, 1331
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	1137, 1205
MmeI	TCCRAC	2 cut(s)	228, 784
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	1954
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	4 cut(s)	1070, 1236, 1277, 1827
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	950, 1450
MspCI	CTTAAG	2 cut(s)	581, 784
MspI	CCGG	4 cut(s)	650, 1302, 1435, 1808
MspR9I	CCNGG	5 cut(s)	957, 1303, 1722, 1808, 1918
MunI	CAATTG	1 cut(s)	834
Mva1269I	GAATGC	1 cut(s)	1624
MvaI	CCWGG	3 cut(s)	957, 1722, 1918
MwoI	GCNNNNNNNGC	3 cut(s)	11, 47, 615
NciI	CCSGG	2 cut(s)	1303, 1808
NdeII	GATC	2 cut(s)	223, 475
NlaIII	CATG	8 cut(s)	164, 874, 907, 1069, 1282, 1404, 1496, 1606
NlaIV	GGNNCC	5 cut(s)	33, 105, 555, 841, 1029
NmuCI	GTSAC	4 cut(s)	260, 1041, 1072, 1753
NspI	RCATGY	2 cut(s)	164, 874
PaqCI	CACCTGC	1 cut(s)	1254
PciI	ACATGT	1 cut(s)	160
PctI	GAATGC	1 cut(s)	1624
PdmI	GAANNNNTTC	1 cut(s)	1954
PfeI	GAWTC	6 cut(s)	200, 296, 308, 317, 413, 1745
PkrI	GCNGC	8 cut(s)	396, 579, 876, 949, 952, 982, 1270, 1530
PleI	GAGTC	2 cut(s)	1136, 1204
PmaCI	CACGTG	1 cut(s)	1326
PmlI	CACGTG	1 cut(s)	1326
PpsI	GAGTC	2 cut(s)	1136, 1204
Ppu21I	YACGTR	1 cut(s)	1326
PscI	ACATGT	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	1113
Psp6I	CCWGG	3 cut(s)	955, 1720, 1916
PspCI	CACGTG	1 cut(s)	1326
PspFI	CCCAGC	1 cut(s)	1778
PspGI	CCWGG	3 cut(s)	955, 1720, 1916
PspN4I	GGNNCC	5 cut(s)	33, 105, 555, 841, 1029
PspPI	GGNCC	3 cut(s)	32, 118, 907
PstI	CTGCAG	3 cut(s)	396, 1251, 1561
PstNI	CAGNNNCTG	2 cut(s)	191, 305
RsaI	GTAC	2 cut(s)	602, 1319
RsaNI	GTAC	2 cut(s)	601, 1318
RseI	CAYNNNNRTG	4 cut(s)	1070, 1236, 1277, 1827
SacI	GAGCTC	1 cut(s)	1113
SatI	GCNGC	8 cut(s)	395, 578, 875, 948, 951, 981, 1269, 1529
Sau3AI	GATC	2 cut(s)	223, 475
Sau96I	GGNCC	3 cut(s)	32, 118, 907
SchI	GAGTC	2 cut(s)	1137, 1205
ScrFI	CCNGG	5 cut(s)	957, 1303, 1722, 1808, 1918
SduI	GDGCHC	5 cut(s)	522, 556, 1113, 1243, 1331
SexAI	ACCWGGT	1 cut(s)	955
SfaNI	GCATC	4 cut(s)	232, 259, 1147, 1276
SfcI	CTRYAG	3 cut(s)	392, 1247, 1557
SinI	GGWCC	2 cut(s)	32, 118
SmiMI	CAYNNNNRTG	4 cut(s)	1070, 1236, 1277, 1827
SmlI	CTYRAG	4 cut(s)	581, 784, 918, 1037
SmoI	CTYRAG	4 cut(s)	581, 784, 918, 1037
SsiI	CCGC	4 cut(s)	948, 981, 1063, 1450
SspMI	CTAG	2 cut(s)	776, 1896
SstI	GAGCTC	1 cut(s)	1113
StyD4I	CCNGG	5 cut(s)	955, 1301, 1720, 1806, 1916
StyI	CCWWGG	4 cut(s)	253, 557, 1031, 1842
TaaI	ACNGT	4 cut(s)	209, 278, 1084, 1585
TaiI	ACGT	1 cut(s)	1328
TaqI	TCGA	4 cut(s)	514, 694, 797, 1790
TatI	WGTACW	2 cut(s)	600, 1317
TauI	GCSGC	2 cut(s)	950, 983
TfiI	GAWTC	6 cut(s)	200, 296, 308, 317, 413, 1745
TscAI	CASTG	3 cut(s)	1054, 1174, 1590
TseFI	GTSAC	4 cut(s)	260, 1041, 1072, 1753
TseI	GCWGC	6 cut(s)	394, 577, 874, 950, 1268, 1528
Tsp45I	GTSAC	4 cut(s)	260, 1041, 1072, 1753
TspDTI	ATGAA	9 cut(s)	153, 330, 1004, 1032, 1037, 1220, 1239, 1365, 1814
TspRI	CASTG	3 cut(s)	1054, 1174, 1590
Vha464I	CTTAAG	2 cut(s)	581, 784
VpaK11BI	GGWCC	2 cut(s)	32, 118
XapI	RAATTY	4 cut(s)	167, 1227, 1291, 1801
XceI	RCATGY	2 cut(s)	164, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1279
XmnI	GAANNNNTTC	1 cut(s)	1954
XspI	CTAG	2 cut(s)	776, 1896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.